Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1232 and SMa1233 are separated by 3 nucleotides SMa1233 and SMa1236 overlap by 31 nucleotides SMa1236 and SMa1239 overlap by 26 nucleotides SMa1239 and SMa1240 overlap by 8 nucleotides SMa1240 and SMa1241 are separated by 7 nucleotides
SMa1232: SMa1232 - NapC membrane-bound tetraheme cytochrome c subunit, at 676,020 to 676,721
SMa1232
SMa1233: SMa1233 - NapB periplasmic nitrate reductase cytochrome c- type subunit, at 676,725 to 677,228
SMa1233
SMa1236: SMa1236 - nitrate reductase catalytic subunit, at 677,198 to 679,702
SMa1236
SMa1239: SMa1239 - NapD component of periplasmic nitrate reductase, at 679,677 to 679,964
SMa1239
SMa1240: SMa1240 - NapF ferredoxin component of periplasmic nitrate reductase, at 679,957 to 680,457
SMa1240
SMa1241: SMa1241 - NapE component of periplasmic nitrate reductase, at 680,465 to 680,650
SMa1241
Position (kb) 677
678
679
680 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 676.213 kb on + strand, within SMa1232 at 676.374 kb on + strand, within SMa1232 at 676.375 kb on - strand, within SMa1232 at 676.506 kb on - strand, within SMa1232 at 676.726 kb on + strand at 676.779 kb on - strand, within SMa1233 at 676.879 kb on + strand, within SMa1233 at 676.879 kb on + strand, within SMa1233 at 676.880 kb on - strand, within SMa1233 at 677.312 kb on + strand at 677.446 kb on + strand at 677.476 kb on - strand, within SMa1236 at 677.554 kb on - strand, within SMa1236 at 677.586 kb on + strand, within SMa1236 at 677.628 kb on + strand, within SMa1236 at 677.659 kb on - strand, within SMa1236 at 677.739 kb on + strand, within SMa1236 at 677.749 kb on - strand, within SMa1236 at 677.790 kb on + strand, within SMa1236 at 677.791 kb on - strand, within SMa1236 at 677.791 kb on - strand, within SMa1236 at 677.817 kb on + strand, within SMa1236 at 677.850 kb on + strand, within SMa1236 at 677.850 kb on + strand, within SMa1236 at 677.913 kb on + strand, within SMa1236 at 677.914 kb on - strand, within SMa1236 at 678.064 kb on + strand, within SMa1236 at 678.064 kb on + strand, within SMa1236 at 678.065 kb on - strand, within SMa1236 at 678.156 kb on + strand, within SMa1236 at 678.204 kb on + strand, within SMa1236 at 678.204 kb on + strand, within SMa1236 at 678.205 kb on - strand, within SMa1236 at 678.205 kb on - strand, within SMa1236 at 678.428 kb on + strand, within SMa1236 at 678.429 kb on - strand, within SMa1236 at 678.526 kb on - strand, within SMa1236 at 678.526 kb on - strand, within SMa1236 at 678.575 kb on - strand, within SMa1236 at 678.632 kb on + strand, within SMa1236 at 678.633 kb on - strand, within SMa1236 at 678.633 kb on - strand, within SMa1236 at 678.633 kb on - strand, within SMa1236 at 678.790 kb on - strand, within SMa1236 at 678.824 kb on - strand, within SMa1236 at 678.824 kb on - strand, within SMa1236 at 678.866 kb on - strand, within SMa1236 at 678.882 kb on + strand, within SMa1236 at 678.882 kb on + strand, within SMa1236 at 678.882 kb on + strand, within SMa1236 at 678.882 kb on + strand, within SMa1236 at 678.883 kb on - strand, within SMa1236 at 679.092 kb on + strand, within SMa1236 at 679.092 kb on + strand, within SMa1236 at 679.093 kb on - strand, within SMa1236 at 679.137 kb on + strand, within SMa1236 at 679.137 kb on + strand, within SMa1236 at 679.138 kb on - strand, within SMa1236 at 679.416 kb on + strand, within SMa1236 at 679.416 kb on + strand, within SMa1236 at 679.416 kb on + strand, within SMa1236 at 679.417 kb on - strand, within SMa1236 at 679.437 kb on + strand, within SMa1236 at 679.575 kb on - strand at 679.639 kb on + strand at 679.824 kb on + strand, within SMa1239 at 679.825 kb on - strand, within SMa1239 at 679.937 kb on + strand at 679.942 kb on + strand at 679.942 kb on + strand at 679.942 kb on + strand at 680.055 kb on + strand, within SMa1240
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 676,213 + SMa1232 0.27 -0.6 676,374 + SMa1232 0.50 -0.8 676,375 - SMa1232 0.51 -2.3 676,506 - SMa1232 0.69 -0.3 676,726 + -0.7 676,779 - SMa1233 0.11 -1.1 676,879 + SMa1233 0.31 -0.4 676,879 + SMa1233 0.31 +0.1 676,880 - SMa1233 0.31 -0.3 677,312 + +0.3 677,446 + -1.6 677,476 - SMa1236 0.11 -0.9 677,554 - SMa1236 0.14 +0.1 677,586 + SMa1236 0.15 -0.1 677,628 + SMa1236 0.17 +1.0 677,659 - SMa1236 0.18 -0.1 677,739 + SMa1236 0.22 -0.3 677,749 - SMa1236 0.22 -1.8 677,790 + SMa1236 0.24 -0.5 677,791 - SMa1236 0.24 -1.4 677,791 - SMa1236 0.24 +0.6 677,817 + SMa1236 0.25 -1.1 677,850 + SMa1236 0.26 +1.8 677,850 + SMa1236 0.26 -0.7 677,913 + SMa1236 0.29 -2.1 677,914 - SMa1236 0.29 +0.6 678,064 + SMa1236 0.35 +0.2 678,064 + SMa1236 0.35 -1.1 678,065 - SMa1236 0.35 -1.0 678,156 + SMa1236 0.38 +0.4 678,204 + SMa1236 0.40 +0.3 678,204 + SMa1236 0.40 -0.3 678,205 - SMa1236 0.40 -1.8 678,205 - SMa1236 0.40 +0.0 678,428 + SMa1236 0.49 -0.1 678,429 - SMa1236 0.49 -1.0 678,526 - SMa1236 0.53 -0.3 678,526 - SMa1236 0.53 -0.1 678,575 - SMa1236 0.55 +0.0 678,632 + SMa1236 0.57 +0.1 678,633 - SMa1236 0.57 -0.1 678,633 - SMa1236 0.57 +0.1 678,633 - SMa1236 0.57 -0.5 678,790 - SMa1236 0.64 -0.2 678,824 - SMa1236 0.65 -0.5 678,824 - SMa1236 0.65 -1.5 678,866 - SMa1236 0.67 +0.9 678,882 + SMa1236 0.67 +0.2 678,882 + SMa1236 0.67 -0.0 678,882 + SMa1236 0.67 -0.2 678,882 + SMa1236 0.67 -0.4 678,883 - SMa1236 0.67 -3.0 679,092 + SMa1236 0.76 +0.7 679,092 + SMa1236 0.76 -2.7 679,093 - SMa1236 0.76 -0.0 679,137 + SMa1236 0.77 +1.1 679,137 + SMa1236 0.77 -0.0 679,138 - SMa1236 0.77 -0.6 679,416 + SMa1236 0.89 -0.0 679,416 + SMa1236 0.89 -0.4 679,416 + SMa1236 0.89 -0.6 679,417 - SMa1236 0.89 +0.0 679,437 + SMa1236 0.89 +0.1 679,575 - -0.1 679,639 + +0.5 679,824 + SMa1239 0.51 +0.5 679,825 - SMa1239 0.51 -1.0 679,937 + -1.0 679,942 + -0.1 679,942 + -0.2 679,942 + -1.6 680,055 + SMa1240 0.20 -0.4
Or see this region's nucleotide sequence