Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1182 and SMa1183 overlap by 1 nucleotides SMa1183 and SMa1184 overlap by 4 nucleotides SMa1184 and SMa1185 overlap by 4 nucleotides
SMa1182: SMa1182 - nitrous-oxide reductase, at 647,969 to 649,888
SMa1182
SMa1183: SMa1183 - NosD nitrous oxidase accessory protein, at 649,888 to 651,249
SMa1183
SMa1184: SMa1184 - NosF ATPase, at 651,246 to 652,160
SMa1184
SMa1185: SMa1185 - NosY permease, at 652,157 to 652,984
SMa1185
Position (kb) 649
650
651
652 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 648.912 kb on - strand, within SMa1182 at 648.924 kb on + strand, within SMa1182 at 648.956 kb on - strand, within SMa1182 at 649.118 kb on + strand, within SMa1182 at 649.119 kb on - strand, within SMa1182 at 649.139 kb on + strand, within SMa1182 at 649.140 kb on - strand at 649.202 kb on + strand, within SMa1182 at 649.227 kb on + strand, within SMa1182 at 649.228 kb on - strand, within SMa1182 at 649.344 kb on - strand, within SMa1182 at 649.605 kb on - strand, within SMa1182 at 649.605 kb on - strand, within SMa1182 at 649.605 kb on - strand, within SMa1182 at 649.676 kb on + strand, within SMa1182 at 649.677 kb on - strand, within SMa1182 at 649.677 kb on - strand, within SMa1182 at 649.805 kb on + strand at 649.806 kb on - strand at 649.812 kb on - strand at 649.814 kb on + strand at 649.814 kb on + strand at 649.905 kb on - strand at 650.206 kb on + strand, within SMa1183 at 650.297 kb on - strand, within SMa1183 at 650.297 kb on - strand, within SMa1183 at 650.328 kb on - strand, within SMa1183 at 650.384 kb on + strand, within SMa1183 at 650.434 kb on + strand, within SMa1183 at 650.448 kb on + strand, within SMa1183 at 650.450 kb on + strand, within SMa1183 at 650.450 kb on + strand, within SMa1183 at 650.451 kb on - strand, within SMa1183 at 650.522 kb on - strand, within SMa1183 at 650.522 kb on - strand, within SMa1183 at 650.528 kb on - strand, within SMa1183 at 650.528 kb on - strand, within SMa1183 at 650.582 kb on - strand, within SMa1183 at 650.663 kb on - strand, within SMa1183 at 650.663 kb on - strand, within SMa1183 at 650.822 kb on + strand, within SMa1183 at 650.823 kb on - strand, within SMa1183 at 650.830 kb on + strand, within SMa1183 at 650.962 kb on + strand, within SMa1183 at 650.962 kb on + strand, within SMa1183 at 650.962 kb on + strand, within SMa1183 at 650.963 kb on - strand, within SMa1183 at 651.285 kb on + strand at 651.301 kb on + strand at 651.360 kb on - strand, within SMa1184 at 651.360 kb on - strand, within SMa1184 at 651.642 kb on + strand, within SMa1184 at 651.643 kb on - strand, within SMa1184 at 651.643 kb on - strand, within SMa1184 at 651.643 kb on - strand, within SMa1184 at 651.760 kb on - strand, within SMa1184 at 651.769 kb on + strand, within SMa1184 at 651.821 kb on + strand, within SMa1184 at 652.126 kb on - strand at 652.126 kb on - strand at 652.126 kb on - strand at 652.126 kb on - strand at 652.165 kb on + strand at 652.171 kb on + strand at 652.218 kb on + strand at 652.236 kb on + strand at 652.236 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 648,912 - SMa1182 0.49 +0.4 648,924 + SMa1182 0.50 -0.8 648,956 - SMa1182 0.51 -0.0 649,118 + SMa1182 0.60 -0.6 649,119 - SMa1182 0.60 +0.9 649,139 + SMa1182 0.61 +0.6 649,140 - +1.5 649,202 + SMa1182 0.64 +0.4 649,227 + SMa1182 0.66 +0.1 649,228 - SMa1182 0.66 -2.7 649,344 - SMa1182 0.72 +1.0 649,605 - SMa1182 0.85 -0.7 649,605 - SMa1182 0.85 -2.6 649,605 - SMa1182 0.85 -1.2 649,676 + SMa1182 0.89 +0.8 649,677 - SMa1182 0.89 +0.6 649,677 - SMa1182 0.89 -0.2 649,805 + +0.3 649,806 - -3.6 649,812 - -0.3 649,814 + +3.0 649,814 + -0.3 649,905 - +0.5 650,206 + SMa1183 0.23 +0.1 650,297 - SMa1183 0.30 -0.7 650,297 - SMa1183 0.30 +0.6 650,328 - SMa1183 0.32 +1.0 650,384 + SMa1183 0.36 +2.9 650,434 + SMa1183 0.40 +0.1 650,448 + SMa1183 0.41 -2.4 650,450 + SMa1183 0.41 +0.7 650,450 + SMa1183 0.41 +1.3 650,451 - SMa1183 0.41 +0.3 650,522 - SMa1183 0.47 +0.2 650,522 - SMa1183 0.47 -0.1 650,528 - SMa1183 0.47 +0.7 650,528 - SMa1183 0.47 -0.0 650,582 - SMa1183 0.51 +1.1 650,663 - SMa1183 0.57 +0.9 650,663 - SMa1183 0.57 -0.3 650,822 + SMa1183 0.69 -1.9 650,823 - SMa1183 0.69 +0.5 650,830 + SMa1183 0.69 -2.1 650,962 + SMa1183 0.79 -1.8 650,962 + SMa1183 0.79 -0.5 650,962 + SMa1183 0.79 +0.5 650,963 - SMa1183 0.79 +0.6 651,285 + +2.0 651,301 + -2.4 651,360 - SMa1184 0.12 +0.4 651,360 - SMa1184 0.12 -2.1 651,642 + SMa1184 0.43 -0.7 651,643 - SMa1184 0.43 +0.2 651,643 - SMa1184 0.43 -0.2 651,643 - SMa1184 0.43 +1.2 651,760 - SMa1184 0.56 +0.5 651,769 + SMa1184 0.57 -0.0 651,821 + SMa1184 0.63 -0.2 652,126 - +1.0 652,126 - -0.1 652,126 - -1.7 652,126 - -0.8 652,165 + -1.3 652,171 + +1.0 652,218 + -0.1 652,236 + -1.1 652,236 + -0.3
Or see this region's nucleotide sequence