Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0864 and SMa0866 are separated by 7 nucleotides SMa0866 and SMa0868 are separated by 14 nucleotides SMa0868 and SMa0869 overlap by 4 nucleotides
SMa0864: SMa0864 - nodulation factor exporter subunit NodI, at 477,934 to 479,001
SMa0864
SMa0866: SMa0866 - NodC N-acetylglucosaminyltransferase, at 479,009 to 480,289
SMa0866
SMa0868: SMa0868 - NodB chitooligosaccharide deacetylase, at 480,304 to 480,957
SMa0868
SMa0869: SMa0869 - acyltransferase, at 480,954 to 481,544
SMa0869
Position (kb) 479
480
481 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 478.037 kb on - strand at 478.037 kb on - strand at 478.109 kb on - strand, within SMa0864 at 478.109 kb on - strand, within SMa0864 at 478.120 kb on + strand, within SMa0864 at 478.142 kb on + strand, within SMa0864 at 478.151 kb on - strand, within SMa0864 at 478.264 kb on - strand, within SMa0864 at 478.264 kb on - strand, within SMa0864 at 478.264 kb on - strand, within SMa0864 at 478.582 kb on + strand, within SMa0864 at 478.583 kb on - strand, within SMa0864 at 478.604 kb on - strand, within SMa0864 at 478.701 kb on + strand, within SMa0864 at 478.805 kb on + strand, within SMa0864 at 479.104 kb on - strand at 479.135 kb on - strand at 479.146 kb on - strand, within SMa0866 at 479.162 kb on + strand, within SMa0866 at 479.162 kb on + strand, within SMa0866 at 479.231 kb on + strand, within SMa0866 at 479.304 kb on - strand, within SMa0866 at 479.470 kb on - strand, within SMa0866 at 479.505 kb on - strand, within SMa0866 at 479.521 kb on - strand, within SMa0866 at 479.650 kb on - strand, within SMa0866 at 479.653 kb on + strand, within SMa0866 at 479.654 kb on - strand, within SMa0866 at 479.677 kb on + strand, within SMa0866 at 479.677 kb on + strand, within SMa0866 at 479.678 kb on - strand, within SMa0866 at 479.983 kb on - strand, within SMa0866 at 479.993 kb on + strand, within SMa0866 at 480.039 kb on + strand, within SMa0866 at 480.039 kb on + strand, within SMa0866 at 480.205 kb on - strand at 480.206 kb on + strand at 480.246 kb on + strand at 480.286 kb on - strand at 480.402 kb on + strand, within SMa0868 at 480.538 kb on + strand, within SMa0868 at 480.538 kb on + strand, within SMa0868 at 480.538 kb on + strand, within SMa0868 at 480.539 kb on - strand, within SMa0868 at 480.596 kb on + strand, within SMa0868 at 480.598 kb on - strand, within SMa0868 at 480.786 kb on - strand, within SMa0868 at 480.822 kb on - strand, within SMa0868 at 480.889 kb on + strand, within SMa0868 at 480.889 kb on + strand, within SMa0868 at 480.891 kb on + strand, within SMa0868 at 480.891 kb on + strand, within SMa0868 at 480.892 kb on - strand at 480.937 kb on + strand at 480.938 kb on - strand at 480.942 kb on - strand at 480.958 kb on - strand at 481.138 kb on + strand, within SMa0869 at 481.273 kb on + strand, within SMa0869 at 481.273 kb on + strand, within SMa0869 at 481.276 kb on - strand, within SMa0869
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 478,037 - -0.1 478,037 - -1.3 478,109 - SMa0864 0.16 +0.5 478,109 - SMa0864 0.16 -0.6 478,120 + SMa0864 0.17 -2.7 478,142 + SMa0864 0.19 +0.5 478,151 - SMa0864 0.20 +0.3 478,264 - SMa0864 0.31 -1.4 478,264 - SMa0864 0.31 -1.0 478,264 - SMa0864 0.31 +1.1 478,582 + SMa0864 0.61 -0.1 478,583 - SMa0864 0.61 +1.0 478,604 - SMa0864 0.63 +0.9 478,701 + SMa0864 0.72 +0.5 478,805 + SMa0864 0.82 -0.1 479,104 - +0.1 479,135 - -0.9 479,146 - SMa0866 0.11 -0.1 479,162 + SMa0866 0.12 -0.4 479,162 + SMa0866 0.12 -1.7 479,231 + SMa0866 0.17 -0.8 479,304 - SMa0866 0.23 -0.4 479,470 - SMa0866 0.36 -1.0 479,505 - SMa0866 0.39 -0.5 479,521 - SMa0866 0.40 -0.1 479,650 - SMa0866 0.50 -0.1 479,653 + SMa0866 0.50 -0.8 479,654 - SMa0866 0.50 -1.1 479,677 + SMa0866 0.52 -2.2 479,677 + SMa0866 0.52 +1.5 479,678 - SMa0866 0.52 +0.7 479,983 - SMa0866 0.76 +0.2 479,993 + SMa0866 0.77 -1.6 480,039 + SMa0866 0.80 +0.5 480,039 + SMa0866 0.80 -0.7 480,205 - -0.1 480,206 + -0.7 480,246 + +0.4 480,286 - -2.4 480,402 + SMa0868 0.15 -3.1 480,538 + SMa0868 0.36 -0.4 480,538 + SMa0868 0.36 +0.2 480,538 + SMa0868 0.36 -0.5 480,539 - SMa0868 0.36 -0.1 480,596 + SMa0868 0.45 -0.1 480,598 - SMa0868 0.45 +0.1 480,786 - SMa0868 0.74 -2.0 480,822 - SMa0868 0.79 -1.5 480,889 + SMa0868 0.89 +1.2 480,889 + SMa0868 0.89 -0.2 480,891 + SMa0868 0.90 +0.0 480,891 + SMa0868 0.90 -0.5 480,892 - +1.1 480,937 + +0.3 480,938 - -0.5 480,942 - +1.4 480,958 - +0.6 481,138 + SMa0869 0.31 -0.2 481,273 + SMa0869 0.54 +2.5 481,273 + SMa0869 0.54 -2.2 481,276 - SMa0869 0.54 -4.3
Or see this region's nucleotide sequence