Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0752 and SMa0753 are separated by 295 nucleotides SMa0753 and SMa0754 are separated by 283 nucleotides
SMa0752: SMa0752 - dioxygenase reductase subunit, at 405,447 to 406,508
SMa0752
SMa0753: SMa0753 - hypothetical protein, at 406,804 to 407,496
SMa0753
SMa0754: SMa0754 - hypothetical protein, at 407,780 to 408,106
SMa0754
Position (kb) 406
407
408 Strain fitness (log2 ratio) -2
-1
0
1
2 at 406.077 kb on + strand, within SMa0752 at 406.118 kb on + strand, within SMa0752 at 406.118 kb on + strand, within SMa0752 at 406.119 kb on - strand, within SMa0752 at 406.309 kb on + strand, within SMa0752 at 406.379 kb on + strand, within SMa0752 at 406.379 kb on + strand, within SMa0752 at 406.380 kb on - strand, within SMa0752 at 406.380 kb on - strand, within SMa0752 at 406.380 kb on - strand, within SMa0752 at 406.409 kb on + strand at 406.410 kb on - strand at 406.410 kb on - strand at 406.456 kb on - strand at 406.456 kb on - strand at 406.456 kb on - strand at 406.457 kb on + strand at 406.457 kb on + strand at 406.457 kb on + strand at 406.458 kb on - strand at 406.458 kb on - strand at 406.492 kb on + strand at 406.493 kb on - strand at 406.506 kb on + strand at 406.507 kb on - strand at 406.745 kb on - strand at 406.930 kb on - strand, within SMa0753 at 407.543 kb on + strand at 407.543 kb on + strand at 407.543 kb on + strand at 407.595 kb on + strand at 407.595 kb on + strand at 407.595 kb on + strand at 407.596 kb on - strand at 407.596 kb on - strand at 407.596 kb on - strand at 407.600 kb on - strand at 407.600 kb on - strand at 407.600 kb on - strand at 407.600 kb on - strand at 407.646 kb on + strand at 407.646 kb on + strand at 407.646 kb on + strand at 407.646 kb on + strand at 407.647 kb on - strand at 407.647 kb on - strand at 407.647 kb on - strand at 407.961 kb on - strand, within SMa0754 at 408.035 kb on - strand, within SMa0754 at 408.195 kb on + strand at 408.275 kb on + strand at 408.308 kb on + strand at 408.309 kb on - strand at 408.386 kb on - strand at 408.475 kb on + strand at 408.476 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 406,077 + SMa0752 0.59 -1.0 406,118 + SMa0752 0.63 +0.1 406,118 + SMa0752 0.63 +1.1 406,119 - SMa0752 0.63 +0.2 406,309 + SMa0752 0.81 -1.6 406,379 + SMa0752 0.88 +0.2 406,379 + SMa0752 0.88 +1.0 406,380 - SMa0752 0.88 -0.3 406,380 - SMa0752 0.88 +0.4 406,380 - SMa0752 0.88 +1.3 406,409 + +0.5 406,410 - +2.4 406,410 - -0.8 406,456 - -1.4 406,456 - +0.9 406,456 - +2.5 406,457 + -0.9 406,457 + +0.8 406,457 + -0.6 406,458 - +0.4 406,458 - -0.3 406,492 + -0.4 406,493 - -1.3 406,506 + +0.3 406,507 - +0.4 406,745 - -0.2 406,930 - SMa0753 0.18 -2.4 407,543 + -0.5 407,543 + +0.4 407,543 + +0.1 407,595 + +0.2 407,595 + -0.4 407,595 + -1.4 407,596 - +2.1 407,596 - -0.5 407,596 - +0.3 407,600 - +0.7 407,600 - -0.5 407,600 - -1.0 407,600 - +0.8 407,646 + -1.3 407,646 + -2.6 407,646 + +0.1 407,646 + -0.3 407,647 - -1.0 407,647 - +0.1 407,647 - +0.9 407,961 - SMa0754 0.55 -0.1 408,035 - SMa0754 0.78 +0.7 408,195 + +1.4 408,275 + -0.2 408,308 + -1.6 408,309 - +1.0 408,386 - -0.1 408,475 + +0.5 408,476 - -0.1
Or see this region's nucleotide sequence