Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0664 and SMa0665 are separated by 33 nucleotides SMa0665 and SMa0667 are separated by 497 nucleotides SMa0667 and SMa0669 are separated by 3 nucleotides
SMa0664: SMa0664 - hypothetical protein, at 352,085 to 353,842
SMa0664
SMa0665: SMa0665 - hypothetical protein, at 353,876 to 355,030
SMa0665
SMa0667: SMa0667 - hypothetical protein, at 355,528 to 356,016
SMa0667
SMa0669: SMa0669 - hemolysin D, at 356,020 to 357,249
SMa0669
Position (kb) 353
354
355
356 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 352.894 kb on - strand, within SMa0664 at 352.935 kb on - strand, within SMa0664 at 352.935 kb on - strand, within SMa0664 at 352.945 kb on - strand, within SMa0664 at 352.947 kb on + strand, within SMa0664 at 352.948 kb on - strand, within SMa0664 at 352.948 kb on - strand, within SMa0664 at 352.971 kb on + strand, within SMa0664 at 352.972 kb on - strand, within SMa0664 at 353.000 kb on - strand, within SMa0664 at 353.084 kb on + strand, within SMa0664 at 353.084 kb on + strand, within SMa0664 at 353.085 kb on - strand, within SMa0664 at 353.085 kb on - strand, within SMa0664 at 353.085 kb on - strand, within SMa0664 at 353.106 kb on - strand, within SMa0664 at 353.190 kb on - strand, within SMa0664 at 353.208 kb on + strand, within SMa0664 at 353.208 kb on + strand, within SMa0664 at 353.222 kb on + strand, within SMa0664 at 353.223 kb on - strand, within SMa0664 at 353.340 kb on + strand, within SMa0664 at 353.340 kb on + strand, within SMa0664 at 353.356 kb on + strand, within SMa0664 at 353.356 kb on + strand, within SMa0664 at 353.356 kb on + strand, within SMa0664 at 353.357 kb on - strand, within SMa0664 at 353.357 kb on - strand, within SMa0664 at 353.381 kb on - strand, within SMa0664 at 353.411 kb on + strand, within SMa0664 at 353.412 kb on - strand, within SMa0664 at 353.417 kb on - strand, within SMa0664 at 353.417 kb on - strand, within SMa0664 at 353.502 kb on + strand, within SMa0664 at 353.571 kb on - strand, within SMa0664 at 353.571 kb on - strand, within SMa0664 at 353.571 kb on - strand, within SMa0664 at 353.571 kb on - strand, within SMa0664 at 353.573 kb on - strand, within SMa0664 at 353.639 kb on + strand, within SMa0664 at 353.763 kb on + strand at 353.799 kb on + strand at 353.824 kb on - strand at 353.877 kb on + strand at 353.877 kb on + strand at 353.877 kb on + strand at 353.877 kb on + strand at 353.878 kb on - strand at 353.878 kb on - strand at 353.937 kb on - strand at 353.961 kb on - strand at 353.971 kb on + strand at 354.109 kb on + strand, within SMa0665 at 354.129 kb on - strand, within SMa0665 at 354.238 kb on + strand, within SMa0665 at 354.239 kb on - strand, within SMa0665 at 354.392 kb on - strand, within SMa0665 at 354.392 kb on - strand, within SMa0665 at 354.573 kb on - strand, within SMa0665 at 354.612 kb on + strand, within SMa0665 at 354.613 kb on - strand, within SMa0665 at 354.646 kb on + strand, within SMa0665 at 354.707 kb on + strand, within SMa0665 at 354.775 kb on + strand, within SMa0665 at 354.775 kb on + strand, within SMa0665 at 354.776 kb on - strand, within SMa0665 at 354.776 kb on - strand, within SMa0665 at 354.840 kb on + strand, within SMa0665 at 354.840 kb on + strand, within SMa0665 at 354.877 kb on + strand, within SMa0665 at 355.238 kb on + strand at 355.243 kb on + strand at 355.248 kb on + strand at 355.364 kb on + strand at 355.369 kb on - strand at 355.508 kb on + strand at 355.661 kb on - strand, within SMa0667 at 355.790 kb on + strand, within SMa0667 at 355.791 kb on - strand, within SMa0667 at 355.974 kb on - strand at 355.995 kb on + strand at 355.996 kb on - strand at 355.996 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 352,894 - SMa0664 0.46 -0.4 352,935 - SMa0664 0.48 -0.4 352,935 - SMa0664 0.48 -0.2 352,945 - SMa0664 0.49 -0.5 352,947 + SMa0664 0.49 -0.5 352,948 - SMa0664 0.49 -2.3 352,948 - SMa0664 0.49 -0.1 352,971 + SMa0664 0.50 +0.1 352,972 - SMa0664 0.50 -4.2 353,000 - SMa0664 0.52 +0.0 353,084 + SMa0664 0.57 -0.4 353,084 + SMa0664 0.57 -0.7 353,085 - SMa0664 0.57 -0.1 353,085 - SMa0664 0.57 -3.1 353,085 - SMa0664 0.57 +0.5 353,106 - SMa0664 0.58 +1.2 353,190 - SMa0664 0.63 -0.5 353,208 + SMa0664 0.64 +1.3 353,208 + SMa0664 0.64 +0.5 353,222 + SMa0664 0.65 +0.2 353,223 - SMa0664 0.65 +0.2 353,340 + SMa0664 0.71 +1.5 353,340 + SMa0664 0.71 -0.0 353,356 + SMa0664 0.72 +0.6 353,356 + SMa0664 0.72 -1.5 353,356 + SMa0664 0.72 +1.0 353,357 - SMa0664 0.72 +0.2 353,357 - SMa0664 0.72 +0.3 353,381 - SMa0664 0.74 -0.7 353,411 + SMa0664 0.75 +0.3 353,412 - SMa0664 0.75 +0.5 353,417 - SMa0664 0.76 +1.1 353,417 - SMa0664 0.76 +0.5 353,502 + SMa0664 0.81 +0.8 353,571 - SMa0664 0.85 +0.6 353,571 - SMa0664 0.85 -2.0 353,571 - SMa0664 0.85 -0.8 353,571 - SMa0664 0.85 -0.9 353,573 - SMa0664 0.85 +0.9 353,639 + SMa0664 0.88 -0.3 353,763 + +0.0 353,799 + -1.4 353,824 - -0.2 353,877 + -0.6 353,877 + +1.3 353,877 + -1.3 353,877 + -0.2 353,878 - -0.6 353,878 - -0.6 353,937 - -0.3 353,961 - +1.1 353,971 + +0.3 354,109 + SMa0665 0.20 +0.1 354,129 - SMa0665 0.22 +0.1 354,238 + SMa0665 0.31 -1.3 354,239 - SMa0665 0.31 -1.1 354,392 - SMa0665 0.45 -1.6 354,392 - SMa0665 0.45 +1.2 354,573 - SMa0665 0.60 -0.0 354,612 + SMa0665 0.64 -0.9 354,613 - SMa0665 0.64 -1.1 354,646 + SMa0665 0.67 -0.5 354,707 + SMa0665 0.72 +1.6 354,775 + SMa0665 0.78 -3.6 354,775 + SMa0665 0.78 -1.2 354,776 - SMa0665 0.78 -0.6 354,776 - SMa0665 0.78 -0.5 354,840 + SMa0665 0.83 -0.5 354,840 + SMa0665 0.83 -0.4 354,877 + SMa0665 0.87 +1.6 355,238 + -0.1 355,243 + -0.6 355,248 + -0.2 355,364 + -0.3 355,369 - -0.5 355,508 + -1.0 355,661 - SMa0667 0.27 -0.3 355,790 + SMa0667 0.54 +0.2 355,791 - SMa0667 0.54 +0.7 355,974 - -0.6 355,995 + -0.8 355,996 - +1.1 355,996 - -0.3
Or see this region's nucleotide sequence