Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0466 and SMa0467 are separated by 237 nucleotides SMa0467 and SMa0469 are separated by 41 nucleotides SMa0469 and SMa0470 are separated by 8 nucleotides
SMa0466: SMa0466 - ABC transporter substrate-binding protein, at 252,021 to 253,625
SMa0466
SMa0467: SMa0467 - ABC transporter permease, at 253,863 to 254,879
SMa0467
SMa0469: SMa0469 - ABC transporter permease, at 254,921 to 255,718
SMa0469
SMa0470: SMa0470 - ABC transporter ATP-binding protein, at 255,727 to 257,562
SMa0470
Position (kb) 253
254
255 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 252.899 kb on + strand, within SMa0466 at 252.902 kb on - strand, within SMa0466 at 253.047 kb on + strand, within SMa0466 at 253.047 kb on + strand, within SMa0466 at 253.048 kb on - strand, within SMa0466 at 253.052 kb on + strand, within SMa0466 at 253.052 kb on + strand, within SMa0466 at 253.069 kb on - strand, within SMa0466 at 253.164 kb on + strand, within SMa0466 at 253.164 kb on + strand, within SMa0466 at 253.165 kb on - strand, within SMa0466 at 253.165 kb on - strand at 253.165 kb on - strand, within SMa0466 at 253.165 kb on - strand, within SMa0466 at 253.202 kb on - strand, within SMa0466 at 253.245 kb on - strand, within SMa0466 at 253.263 kb on + strand, within SMa0466 at 253.263 kb on + strand, within SMa0466 at 253.263 kb on + strand, within SMa0466 at 253.263 kb on + strand, within SMa0466 at 253.264 kb on - strand, within SMa0466 at 253.302 kb on + strand, within SMa0466 at 253.302 kb on + strand, within SMa0466 at 253.303 kb on - strand, within SMa0466 at 253.303 kb on - strand, within SMa0466 at 253.303 kb on - strand, within SMa0466 at 253.303 kb on - strand, within SMa0466 at 253.333 kb on - strand, within SMa0466 at 253.555 kb on - strand at 253.557 kb on - strand at 253.590 kb on - strand at 253.623 kb on + strand at 253.731 kb on - strand at 253.739 kb on + strand at 253.809 kb on - strand at 253.979 kb on + strand, within SMa0467 at 253.979 kb on + strand, within SMa0467 at 253.980 kb on - strand, within SMa0467 at 253.980 kb on - strand, within SMa0467 at 253.980 kb on - strand, within SMa0467 at 253.981 kb on + strand, within SMa0467 at 253.981 kb on + strand, within SMa0467 at 253.981 kb on + strand, within SMa0467 at 253.982 kb on - strand, within SMa0467 at 254.014 kb on + strand, within SMa0467 at 254.015 kb on - strand, within SMa0467 at 254.015 kb on - strand, within SMa0467 at 254.015 kb on - strand, within SMa0467 at 254.015 kb on - strand, within SMa0467 at 254.015 kb on - strand, within SMa0467 at 254.124 kb on + strand, within SMa0467 at 254.125 kb on - strand, within SMa0467 at 254.125 kb on - strand, within SMa0467 at 254.351 kb on + strand, within SMa0467 at 254.352 kb on - strand, within SMa0467 at 254.388 kb on + strand, within SMa0467 at 254.388 kb on + strand, within SMa0467 at 254.388 kb on + strand, within SMa0467 at 254.389 kb on - strand, within SMa0467 at 254.389 kb on - strand, within SMa0467 at 254.389 kb on - strand, within SMa0467 at 254.556 kb on + strand, within SMa0467 at 254.557 kb on - strand, within SMa0467 at 254.597 kb on + strand, within SMa0467 at 254.611 kb on - strand, within SMa0467 at 254.611 kb on - strand, within SMa0467 at 254.698 kb on + strand, within SMa0467 at 254.699 kb on - strand, within SMa0467 at 254.699 kb on - strand, within SMa0467 at 254.699 kb on - strand, within SMa0467 at 254.832 kb on + strand at 254.833 kb on - strand at 254.834 kb on + strand at 254.835 kb on - strand at 254.959 kb on + strand at 254.959 kb on + strand at 254.960 kb on - strand at 254.960 kb on - strand at 255.082 kb on - strand, within SMa0469 at 255.114 kb on - strand, within SMa0469 at 255.114 kb on - strand, within SMa0469 at 255.401 kb on + strand, within SMa0469 at 255.401 kb on + strand at 255.402 kb on - strand, within SMa0469 at 255.402 kb on - strand, within SMa0469 at 255.402 kb on - strand, within SMa0469 at 255.442 kb on + strand, within SMa0469 at 255.491 kb on + strand, within SMa0469 at 255.492 kb on - strand, within SMa0469 at 255.492 kb on - strand, within SMa0469 at 255.492 kb on - strand, within SMa0469 at 255.495 kb on + strand, within SMa0469 at 255.604 kb on + strand, within SMa0469 at 255.604 kb on + strand, within SMa0469 at 255.607 kb on + strand, within SMa0469 at 255.607 kb on + strand, within SMa0469 at 255.608 kb on - strand, within SMa0469
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 252,899 + SMa0466 0.55 -0.2 252,902 - SMa0466 0.55 +0.1 253,047 + SMa0466 0.64 +0.5 253,047 + SMa0466 0.64 -3.7 253,048 - SMa0466 0.64 -0.4 253,052 + SMa0466 0.64 +0.1 253,052 + SMa0466 0.64 +0.2 253,069 - SMa0466 0.65 -1.9 253,164 + SMa0466 0.71 +1.6 253,164 + SMa0466 0.71 -0.7 253,165 - SMa0466 0.71 +0.6 253,165 - +1.6 253,165 - SMa0466 0.71 -0.9 253,165 - SMa0466 0.71 -2.1 253,202 - SMa0466 0.74 -0.3 253,245 - SMa0466 0.76 -0.4 253,263 + SMa0466 0.77 +0.5 253,263 + SMa0466 0.77 +2.8 253,263 + SMa0466 0.77 -2.6 253,263 + SMa0466 0.77 -0.0 253,264 - SMa0466 0.77 -1.0 253,302 + SMa0466 0.80 +0.1 253,302 + SMa0466 0.80 -0.2 253,303 - SMa0466 0.80 -0.1 253,303 - SMa0466 0.80 +0.6 253,303 - SMa0466 0.80 +1.2 253,303 - SMa0466 0.80 +0.1 253,333 - SMa0466 0.82 +0.3 253,555 - +0.8 253,557 - +1.4 253,590 - +0.2 253,623 + -0.2 253,731 - -2.4 253,739 + +0.4 253,809 - -0.5 253,979 + SMa0467 0.11 +0.3 253,979 + SMa0467 0.11 -0.5 253,980 - SMa0467 0.12 +0.5 253,980 - SMa0467 0.12 +1.1 253,980 - SMa0467 0.12 -1.2 253,981 + SMa0467 0.12 -0.5 253,981 + SMa0467 0.12 +0.8 253,981 + SMa0467 0.12 +0.9 253,982 - SMa0467 0.12 -0.7 254,014 + SMa0467 0.15 -0.6 254,015 - SMa0467 0.15 -0.2 254,015 - SMa0467 0.15 +0.6 254,015 - SMa0467 0.15 +1.6 254,015 - SMa0467 0.15 -1.5 254,015 - SMa0467 0.15 -2.6 254,124 + SMa0467 0.26 +0.3 254,125 - SMa0467 0.26 +1.1 254,125 - SMa0467 0.26 -2.2 254,351 + SMa0467 0.48 +0.5 254,352 - SMa0467 0.48 +0.8 254,388 + SMa0467 0.52 -0.8 254,388 + SMa0467 0.52 +0.8 254,388 + SMa0467 0.52 +0.6 254,389 - SMa0467 0.52 +0.1 254,389 - SMa0467 0.52 -0.0 254,389 - SMa0467 0.52 +1.5 254,556 + SMa0467 0.68 -0.3 254,557 - SMa0467 0.68 +0.6 254,597 + SMa0467 0.72 +0.7 254,611 - SMa0467 0.74 -1.2 254,611 - SMa0467 0.74 -0.6 254,698 + SMa0467 0.82 -0.2 254,699 - SMa0467 0.82 +0.5 254,699 - SMa0467 0.82 +0.3 254,699 - SMa0467 0.82 +1.2 254,832 + +0.1 254,833 - -1.2 254,834 + +0.6 254,835 - -0.6 254,959 + -0.8 254,959 + +0.0 254,960 - +0.1 254,960 - -0.2 255,082 - SMa0469 0.20 +0.3 255,114 - SMa0469 0.24 +3.2 255,114 - SMa0469 0.24 +0.1 255,401 + SMa0469 0.60 +2.2 255,401 + +0.3 255,402 - SMa0469 0.60 -0.1 255,402 - SMa0469 0.60 +0.3 255,402 - SMa0469 0.60 -0.7 255,442 + SMa0469 0.65 +0.3 255,491 + SMa0469 0.71 -0.1 255,492 - SMa0469 0.72 +1.0 255,492 - SMa0469 0.72 +0.3 255,492 - SMa0469 0.72 -2.8 255,495 + SMa0469 0.72 -0.0 255,604 + SMa0469 0.86 -2.1 255,604 + SMa0469 0.86 +0.0 255,607 + SMa0469 0.86 -1.4 255,607 + SMa0469 0.86 +0.5 255,608 - SMa0469 0.86 +0.3
Or see this region's nucleotide sequence