Strain Fitness in Sinorhizobium meliloti 1021 around SMa0380

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0376 and SMa5018 are separated by 64 nucleotidesSMa5018 and SMa0380 overlap by 1 nucleotidesSMa0380 and SMa5019 are separated by 160 nucleotidesSMa5019 and SMa0383 overlap by 4 nucleotides SMa0376: SMa0376 - hydrolase, at 201,366 to 202,055 SMa0376 SMa5018: SMa5018 - hypothetical protein, at 202,120 to 202,407 SMa5018 SMa0380: SMa0380 - hydrolase, at 202,407 to 204,389 SMa0380 SMa5019: SMa5019 - hypothetical protein, at 204,550 to 204,993 SMa5019 SMa0383: SMa0383 - hypothetical protein, at 204,990 to 206,588 SMa0383 Position (kb) 202 203 204 205Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 201.718 kb on + strand, within SMa0376at 201.718 kb on + strand, within SMa0376at 201.718 kb on + strand, within SMa0376at 201.718 kb on + strand, within SMa0376at 201.719 kb on - strand, within SMa0376at 201.719 kb on - strand, within SMa0376at 201.719 kb on - strand, within SMa0376at 201.719 kb on - strand, within SMa0376at 201.719 kb on - strand, within SMa0376at 201.719 kb on - strand, within SMa0376at 201.774 kb on + strand, within SMa0376at 201.775 kb on - strand, within SMa0376at 201.775 kb on - strand, within SMa0376at 201.775 kb on - strand, within SMa0376at 201.775 kb on - strand, within SMa0376at 201.918 kb on + strand, within SMa0376at 201.918 kb on + strand, within SMa0376at 201.919 kb on - strand, within SMa0376at 201.919 kb on - strand, within SMa0376at 201.978 kb on + strand, within SMa0376at 201.984 kb on + strand, within SMa0376at 201.984 kb on + strand, within SMa0376at 201.985 kb on - strand, within SMa0376at 201.985 kb on - strand, within SMa0376at 202.017 kb on - strandat 202.053 kb on + strandat 202.053 kb on + strandat 202.054 kb on - strandat 202.129 kb on + strandat 202.130 kb on - strandat 202.136 kb on + strandat 202.137 kb on - strandat 202.171 kb on + strand, within SMa5018at 202.360 kb on - strand, within SMa5018at 202.504 kb on + strandat 202.504 kb on + strandat 202.504 kb on + strandat 202.740 kb on + strand, within SMa0380at 202.741 kb on - strand, within SMa0380at 202.741 kb on - strand, within SMa0380at 202.741 kb on - strand, within SMa0380at 202.947 kb on + strand, within SMa0380at 202.947 kb on + strand, within SMa0380at 202.993 kb on - strand, within SMa0380at 202.993 kb on - strand, within SMa0380at 203.048 kb on + strand, within SMa0380at 203.133 kb on + strand, within SMa0380at 203.223 kb on + strand, within SMa0380at 203.224 kb on - strand, within SMa0380at 203.235 kb on + strand, within SMa0380at 203.236 kb on - strand, within SMa0380at 203.236 kb on - strand, within SMa0380at 203.289 kb on + strand, within SMa0380at 203.290 kb on - strand, within SMa0380at 203.541 kb on + strand, within SMa0380at 203.541 kb on + strand, within SMa0380at 203.542 kb on - strand, within SMa0380at 203.710 kb on - strand, within SMa0380at 203.710 kb on - strand, within SMa0380at 203.736 kb on + strand, within SMa0380at 203.835 kb on + strand, within SMa0380at 203.835 kb on + strand, within SMa0380at 203.836 kb on - strand, within SMa0380at 203.867 kb on - strand, within SMa0380at 204.435 kb on + strandat 204.454 kb on + strandat 204.549 kb on + strandat 204.556 kb on + strandat 204.569 kb on + strandat 204.569 kb on + strandat 204.570 kb on - strandat 204.655 kb on + strand, within SMa5019at 204.655 kb on + strand, within SMa5019at 204.655 kb on + strand, within SMa5019at 204.655 kb on + strand, within SMa5019at 204.656 kb on - strand, within SMa5019at 204.656 kb on - strand, within SMa5019at 204.659 kb on + strand, within SMa5019at 204.659 kb on + strand, within SMa5019at 204.660 kb on - strand, within SMa5019at 204.660 kb on - strand, within SMa5019at 204.660 kb on - strand, within SMa5019

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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201,718 + SMa0376 0.51 -3.4
201,718 + SMa0376 0.51 +2.2
201,718 + SMa0376 0.51 +0.2
201,718 + SMa0376 0.51 -0.2
201,719 - SMa0376 0.51 +1.5
201,719 - SMa0376 0.51 -0.0
201,719 - SMa0376 0.51 -1.9
201,719 - SMa0376 0.51 -3.4
201,719 - SMa0376 0.51 -3.3
201,719 - SMa0376 0.51 +0.7
201,774 + SMa0376 0.59 -2.3
201,775 - SMa0376 0.59 -1.7
201,775 - SMa0376 0.59 -0.3
201,775 - SMa0376 0.59 +1.4
201,775 - SMa0376 0.59 +0.4
201,918 + SMa0376 0.80 -0.3
201,918 + SMa0376 0.80 -1.8
201,919 - SMa0376 0.80 +1.2
201,919 - SMa0376 0.80 -0.4
201,978 + SMa0376 0.89 -2.0
201,984 + SMa0376 0.90 -0.3
201,984 + SMa0376 0.90 -2.9
201,985 - SMa0376 0.90 +0.4
201,985 - SMa0376 0.90 -2.2
202,017 - +0.3
202,053 + -0.3
202,053 + +2.3
202,054 - +0.6
202,129 + -0.7
202,130 - +0.3
202,136 + +0.1
202,137 - -0.5
202,171 + SMa5018 0.18 +0.2
202,360 - SMa5018 0.83 -0.0
202,504 + -0.4
202,504 + -0.4
202,504 + +0.1
202,740 + SMa0380 0.17 +0.1
202,741 - SMa0380 0.17 +0.4
202,741 - SMa0380 0.17 -0.3
202,741 - SMa0380 0.17 -0.2
202,947 + SMa0380 0.27 +1.6
202,947 + SMa0380 0.27 +0.0
202,993 - SMa0380 0.30 +0.1
202,993 - SMa0380 0.30 +0.2
203,048 + SMa0380 0.32 -0.7
203,133 + SMa0380 0.37 -0.2
203,223 + SMa0380 0.41 +0.5
203,224 - SMa0380 0.41 -2.3
203,235 + SMa0380 0.42 +1.7
203,236 - SMa0380 0.42 -0.7
203,236 - SMa0380 0.42 +2.2
203,289 + SMa0380 0.44 -0.6
203,290 - SMa0380 0.45 +1.2
203,541 + SMa0380 0.57 +0.2
203,541 + SMa0380 0.57 +0.7
203,542 - SMa0380 0.57 +1.0
203,710 - SMa0380 0.66 -0.3
203,710 - SMa0380 0.66 -0.3
203,736 + SMa0380 0.67 +2.4
203,835 + SMa0380 0.72 +0.6
203,835 + SMa0380 0.72 +0.6
203,836 - SMa0380 0.72 -1.2
203,867 - SMa0380 0.74 -0.1
204,435 + +0.5
204,454 + +0.8
204,549 + +0.5
204,556 + +0.1
204,569 + +0.2
204,569 + -0.4
204,570 - +0.3
204,655 + SMa5019 0.24 +2.0
204,655 + SMa5019 0.24 +0.5
204,655 + SMa5019 0.24 -1.2
204,655 + SMa5019 0.24 -0.1
204,656 - SMa5019 0.24 -0.3
204,656 - SMa5019 0.24 +0.1
204,659 + SMa5019 0.25 +0.2
204,659 + SMa5019 0.25 -0.7
204,660 - SMa5019 0.25 -0.9
204,660 - SMa5019 0.25 -0.9
204,660 - SMa5019 0.25 -1.3

Or see this region's nucleotide sequence