Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0025 and SMa0026 are separated by 105 nucleotides SMa0026 and SMa0028 are separated by 12 nucleotides SMa0028 and SMa0031 are separated by 294 nucleotides SMa0031 and SMa0034 are separated by 16 nucleotides
SMa0025: SMa0025 - hypothetical protein, at 16,251 to 17,318
SMa0025
SMa0026: SMa0026 - hypothetical protein, at 17,424 to 17,852
SMa0026
SMa0028: SMa0028 - selenophosphate synthetase, at 17,865 to 18,914
SMa0028
SMa0031: SMa0031 - hypothetical protein, at 19,209 to 19,436
SMa0031
SMa0034: SMa0034 - protease, at 19,453 to 21,108
SMa0034
Position (kb) 17
18
19 Strain fitness (log2 ratio) -2
-1
0
1
2 at 17.110 kb on + strand, within SMa0025 at 17.187 kb on - strand, within SMa0025 at 17.371 kb on - strand at 17.371 kb on - strand at 17.419 kb on + strand at 18.073 kb on + strand, within SMa0028 at 18.074 kb on - strand, within SMa0028 at 18.074 kb on - strand, within SMa0028 at 18.130 kb on + strand, within SMa0028 at 18.130 kb on + strand, within SMa0028 at 18.130 kb on + strand, within SMa0028 at 18.130 kb on + strand, within SMa0028 at 18.131 kb on - strand, within SMa0028 at 18.131 kb on - strand, within SMa0028 at 18.131 kb on - strand, within SMa0028 at 18.470 kb on - strand, within SMa0028 at 18.576 kb on + strand, within SMa0028 at 18.577 kb on - strand, within SMa0028 at 18.587 kb on + strand, within SMa0028 at 18.602 kb on + strand, within SMa0028 at 18.602 kb on + strand, within SMa0028 at 18.638 kb on - strand, within SMa0028 at 18.744 kb on + strand, within SMa0028 at 18.745 kb on - strand, within SMa0028 at 18.745 kb on - strand, within SMa0028 at 18.837 kb on + strand at 18.935 kb on + strand at 19.018 kb on + strand at 19.019 kb on - strand at 19.055 kb on - strand at 19.101 kb on + strand at 19.101 kb on + strand at 19.101 kb on + strand at 19.104 kb on + strand at 19.105 kb on - strand at 19.118 kb on + strand at 19.119 kb on - strand at 19.119 kb on - strand at 19.190 kb on - strand at 19.210 kb on + strand at 19.210 kb on + strand at 19.210 kb on + strand at 19.211 kb on - strand at 19.546 kb on + strand at 19.563 kb on + strand at 19.602 kb on + strand at 19.831 kb on - strand, within SMa0034 at 19.837 kb on + strand, within SMa0034 at 19.898 kb on + strand, within SMa0034 at 19.899 kb on - strand, within SMa0034 at 19.899 kb on - strand, within SMa0034
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 17,110 + SMa0025 0.80 +1.1 17,187 - SMa0025 0.88 -0.4 17,371 - -0.2 17,371 - -0.2 17,419 + -0.3 18,073 + SMa0028 0.20 +0.7 18,074 - SMa0028 0.20 +0.1 18,074 - SMa0028 0.20 -1.5 18,130 + SMa0028 0.25 -0.7 18,130 + SMa0028 0.25 +1.3 18,130 + SMa0028 0.25 -0.5 18,130 + SMa0028 0.25 -0.9 18,131 - SMa0028 0.25 -1.3 18,131 - SMa0028 0.25 -1.3 18,131 - SMa0028 0.25 -2.7 18,470 - SMa0028 0.58 +0.6 18,576 + SMa0028 0.68 +0.7 18,577 - SMa0028 0.68 -0.1 18,587 + SMa0028 0.69 +0.5 18,602 + SMa0028 0.70 +0.0 18,602 + SMa0028 0.70 -1.0 18,638 - SMa0028 0.74 -0.6 18,744 + SMa0028 0.84 -0.1 18,745 - SMa0028 0.84 +0.1 18,745 - SMa0028 0.84 -0.2 18,837 + -0.5 18,935 + -0.7 19,018 + +0.3 19,019 - +2.7 19,055 - -0.1 19,101 + -2.4 19,101 + -1.3 19,101 + +1.7 19,104 + +1.7 19,105 - -0.7 19,118 + -1.3 19,119 - +1.7 19,119 - +2.3 19,190 - +0.2 19,210 + +0.9 19,210 + -1.9 19,210 + +0.3 19,211 - +0.3 19,546 + -0.4 19,563 + -0.9 19,602 + -0.8 19,831 - SMa0034 0.23 -0.2 19,837 + SMa0034 0.23 +0.6 19,898 + SMa0034 0.27 +0.7 19,899 - SMa0034 0.27 +1.8 19,899 - SMa0034 0.27 +0.1
Or see this region's nucleotide sequence