Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21525 and SM_b21526 are separated by 156 nucleotides SM_b21526 and SM_b21527 are separated by 88 nucleotides SM_b21527 and SM_b21528 overlap by 8 nucleotides
SM_b21525: SM_b21525 - transcriptional regulator, at 1,049,322 to 1,050,797
_b21525
SM_b21526: SM_b21526 - taurine uptake ABC transporter substrate-binding protein precursor, at 1,050,954 to 1,051,973
_b21526
SM_b21527: SM_b21527 - taurin uptake ABC transporter ATP-binding protein, at 1,052,062 to 1,052,874
_b21527
SM_b21528: SM_b21528 - taurine uptake ABC transporter permease, at 1,052,867 to 1,053,694
_b21528
Position (kb)
1050
1051
1052 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1050.257 kb on + strand, within SM_b21525 at 1050.257 kb on + strand, within SM_b21525 at 1050.258 kb on - strand, within SM_b21525 at 1050.259 kb on + strand, within SM_b21525 at 1050.259 kb on + strand, within SM_b21525 at 1050.259 kb on + strand, within SM_b21525 at 1050.260 kb on - strand, within SM_b21525 at 1050.260 kb on - strand, within SM_b21525 at 1050.260 kb on - strand, within SM_b21525 at 1050.260 kb on - strand, within SM_b21525 at 1050.260 kb on - strand, within SM_b21525 at 1050.391 kb on + strand, within SM_b21525 at 1050.392 kb on - strand, within SM_b21525 at 1050.394 kb on - strand, within SM_b21525 at 1050.394 kb on - strand, within SM_b21525 at 1050.409 kb on + strand, within SM_b21525 at 1050.581 kb on - strand, within SM_b21525 at 1050.581 kb on - strand, within SM_b21525 at 1050.581 kb on - strand, within SM_b21525 at 1050.581 kb on - strand, within SM_b21525 at 1050.581 kb on - strand, within SM_b21525 at 1050.633 kb on - strand, within SM_b21525 at 1050.700 kb on - strand at 1050.700 kb on - strand at 1050.866 kb on + strand at 1050.867 kb on - strand at 1050.867 kb on - strand at 1050.867 kb on - strand at 1050.873 kb on - strand at 1050.902 kb on + strand at 1050.902 kb on + strand at 1051.134 kb on + strand, within SM_b21526 at 1051.136 kb on + strand, within SM_b21526 at 1051.136 kb on + strand, within SM_b21526 at 1051.207 kb on + strand, within SM_b21526 at 1051.207 kb on + strand, within SM_b21526 at 1051.208 kb on - strand, within SM_b21526 at 1051.208 kb on - strand, within SM_b21526 at 1051.420 kb on + strand, within SM_b21526 at 1051.512 kb on + strand, within SM_b21526 at 1051.512 kb on + strand, within SM_b21526 at 1051.513 kb on - strand, within SM_b21526 at 1051.686 kb on + strand, within SM_b21526 at 1051.686 kb on + strand, within SM_b21526 at 1051.779 kb on - strand, within SM_b21526 at 1051.835 kb on + strand, within SM_b21526 at 1051.835 kb on + strand, within SM_b21526 at 1051.926 kb on + strand at 1051.927 kb on - strand at 1051.927 kb on - strand at 1051.950 kb on + strand at 1052.356 kb on - strand, within SM_b21527 at 1052.464 kb on + strand, within SM_b21527 at 1052.465 kb on - strand, within SM_b21527 at 1052.719 kb on - strand, within SM_b21527 at 1052.719 kb on - strand, within SM_b21527 at 1052.722 kb on + strand, within SM_b21527 at 1052.722 kb on + strand, within SM_b21527 at 1052.722 kb on + strand, within SM_b21527 at 1052.723 kb on - strand, within SM_b21527 at 1052.723 kb on - strand, within SM_b21527 at 1052.723 kb on - strand, within SM_b21527 at 1052.723 kb on - strand, within SM_b21527 at 1052.828 kb on - strand at 1052.915 kb on + strand at 1052.915 kb on + strand at 1052.915 kb on + strand at 1052.915 kb on + strand at 1052.917 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 1,050,257 + SM_b21525 0.63 +0.9 1,050,257 + SM_b21525 0.63 +2.0 1,050,258 - SM_b21525 0.63 -0.6 1,050,259 + SM_b21525 0.63 -0.6 1,050,259 + SM_b21525 0.63 +2.6 1,050,259 + SM_b21525 0.63 -0.1 1,050,260 - SM_b21525 0.64 -0.1 1,050,260 - SM_b21525 0.64 +0.2 1,050,260 - SM_b21525 0.64 +1.1 1,050,260 - SM_b21525 0.64 -0.4 1,050,260 - SM_b21525 0.64 -1.9 1,050,391 + SM_b21525 0.72 +1.0 1,050,392 - SM_b21525 0.72 -1.2 1,050,394 - SM_b21525 0.73 +1.2 1,050,394 - SM_b21525 0.73 +1.2 1,050,409 + SM_b21525 0.74 -2.1 1,050,581 - SM_b21525 0.85 -1.7 1,050,581 - SM_b21525 0.85 +2.9 1,050,581 - SM_b21525 0.85 +1.1 1,050,581 - SM_b21525 0.85 -0.1 1,050,581 - SM_b21525 0.85 +0.1 1,050,633 - SM_b21525 0.89 -4.6 1,050,700 - -1.0 1,050,700 - +0.2 1,050,866 + -0.1 1,050,867 - -1.2 1,050,867 - +0.6 1,050,867 - +0.7 1,050,873 - +1.0 1,050,902 + +0.2 1,050,902 + +0.0 1,051,134 + SM_b21526 0.18 +4.2 1,051,136 + SM_b21526 0.18 -2.0 1,051,136 + SM_b21526 0.18 -1.2 1,051,207 + SM_b21526 0.25 -1.3 1,051,207 + SM_b21526 0.25 -0.7 1,051,208 - SM_b21526 0.25 -0.3 1,051,208 - SM_b21526 0.25 +0.8 1,051,420 + SM_b21526 0.46 +0.1 1,051,512 + SM_b21526 0.55 -1.7 1,051,512 + SM_b21526 0.55 -0.9 1,051,513 - SM_b21526 0.55 +0.0 1,051,686 + SM_b21526 0.72 -1.5 1,051,686 + SM_b21526 0.72 +0.4 1,051,779 - SM_b21526 0.81 -0.8 1,051,835 + SM_b21526 0.86 +0.8 1,051,835 + SM_b21526 0.86 +0.8 1,051,926 + -0.1 1,051,927 - -0.8 1,051,927 - +1.1 1,051,950 + +0.0 1,052,356 - SM_b21527 0.36 +0.3 1,052,464 + SM_b21527 0.49 +0.6 1,052,465 - SM_b21527 0.50 +0.2 1,052,719 - SM_b21527 0.81 +1.3 1,052,719 - SM_b21527 0.81 +1.1 1,052,722 + SM_b21527 0.81 -0.4 1,052,722 + SM_b21527 0.81 +0.7 1,052,722 + SM_b21527 0.81 -0.2 1,052,723 - SM_b21527 0.81 +0.1 1,052,723 - SM_b21527 0.81 +0.3 1,052,723 - SM_b21527 0.81 +0.2 1,052,723 - SM_b21527 0.81 -0.8 1,052,828 - +1.3 1,052,915 + -0.4 1,052,915 + +0.4 1,052,915 + -2.2 1,052,915 + +1.2 1,052,917 - -0.1
Or see this region's nucleotide sequence