Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21526

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21525 and SM_b21526 are separated by 156 nucleotidesSM_b21526 and SM_b21527 are separated by 88 nucleotidesSM_b21527 and SM_b21528 overlap by 8 nucleotides SM_b21525: SM_b21525 - transcriptional regulator, at 1,049,322 to 1,050,797 _b21525 SM_b21526: SM_b21526 - taurine uptake ABC transporter substrate-binding protein precursor, at 1,050,954 to 1,051,973 _b21526 SM_b21527: SM_b21527 - taurin uptake ABC transporter ATP-binding protein, at 1,052,062 to 1,052,874 _b21527 SM_b21528: SM_b21528 - taurine uptake ABC transporter permease, at 1,052,867 to 1,053,694 _b21528 Position (kb) 1050 1051 1052Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1050.257 kb on + strand, within SM_b21525at 1050.257 kb on + strand, within SM_b21525at 1050.258 kb on - strand, within SM_b21525at 1050.259 kb on + strand, within SM_b21525at 1050.259 kb on + strand, within SM_b21525at 1050.259 kb on + strand, within SM_b21525at 1050.260 kb on - strand, within SM_b21525at 1050.260 kb on - strand, within SM_b21525at 1050.260 kb on - strand, within SM_b21525at 1050.260 kb on - strand, within SM_b21525at 1050.260 kb on - strand, within SM_b21525at 1050.391 kb on + strand, within SM_b21525at 1050.392 kb on - strand, within SM_b21525at 1050.394 kb on - strand, within SM_b21525at 1050.394 kb on - strand, within SM_b21525at 1050.409 kb on + strand, within SM_b21525at 1050.581 kb on - strand, within SM_b21525at 1050.581 kb on - strand, within SM_b21525at 1050.581 kb on - strand, within SM_b21525at 1050.581 kb on - strand, within SM_b21525at 1050.581 kb on - strand, within SM_b21525at 1050.633 kb on - strand, within SM_b21525at 1050.700 kb on - strandat 1050.700 kb on - strandat 1050.866 kb on + strandat 1050.867 kb on - strandat 1050.867 kb on - strandat 1050.867 kb on - strandat 1050.873 kb on - strandat 1050.902 kb on + strandat 1050.902 kb on + strandat 1051.134 kb on + strand, within SM_b21526at 1051.136 kb on + strand, within SM_b21526at 1051.136 kb on + strand, within SM_b21526at 1051.207 kb on + strand, within SM_b21526at 1051.207 kb on + strand, within SM_b21526at 1051.208 kb on - strand, within SM_b21526at 1051.208 kb on - strand, within SM_b21526at 1051.420 kb on + strand, within SM_b21526at 1051.512 kb on + strand, within SM_b21526at 1051.512 kb on + strand, within SM_b21526at 1051.513 kb on - strand, within SM_b21526at 1051.686 kb on + strand, within SM_b21526at 1051.686 kb on + strand, within SM_b21526at 1051.779 kb on - strand, within SM_b21526at 1051.835 kb on + strand, within SM_b21526at 1051.835 kb on + strand, within SM_b21526at 1051.926 kb on + strandat 1051.927 kb on - strandat 1051.927 kb on - strandat 1051.950 kb on + strandat 1052.356 kb on - strand, within SM_b21527at 1052.464 kb on + strand, within SM_b21527at 1052.465 kb on - strand, within SM_b21527at 1052.719 kb on - strand, within SM_b21527at 1052.719 kb on - strand, within SM_b21527at 1052.722 kb on + strand, within SM_b21527at 1052.722 kb on + strand, within SM_b21527at 1052.722 kb on + strand, within SM_b21527at 1052.723 kb on - strand, within SM_b21527at 1052.723 kb on - strand, within SM_b21527at 1052.723 kb on - strand, within SM_b21527at 1052.723 kb on - strand, within SM_b21527at 1052.828 kb on - strandat 1052.915 kb on + strandat 1052.915 kb on + strandat 1052.915 kb on + strandat 1052.915 kb on + strandat 1052.917 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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1,050,257 + SM_b21525 0.63 +0.9
1,050,257 + SM_b21525 0.63 +2.0
1,050,258 - SM_b21525 0.63 -0.6
1,050,259 + SM_b21525 0.63 -0.6
1,050,259 + SM_b21525 0.63 +2.6
1,050,259 + SM_b21525 0.63 -0.1
1,050,260 - SM_b21525 0.64 -0.1
1,050,260 - SM_b21525 0.64 +0.2
1,050,260 - SM_b21525 0.64 +1.1
1,050,260 - SM_b21525 0.64 -0.4
1,050,260 - SM_b21525 0.64 -1.9
1,050,391 + SM_b21525 0.72 +1.0
1,050,392 - SM_b21525 0.72 -1.2
1,050,394 - SM_b21525 0.73 +1.2
1,050,394 - SM_b21525 0.73 +1.2
1,050,409 + SM_b21525 0.74 -2.1
1,050,581 - SM_b21525 0.85 -1.7
1,050,581 - SM_b21525 0.85 +2.9
1,050,581 - SM_b21525 0.85 +1.1
1,050,581 - SM_b21525 0.85 -0.1
1,050,581 - SM_b21525 0.85 +0.1
1,050,633 - SM_b21525 0.89 -4.6
1,050,700 - -1.0
1,050,700 - +0.2
1,050,866 + -0.1
1,050,867 - -1.2
1,050,867 - +0.6
1,050,867 - +0.7
1,050,873 - +1.0
1,050,902 + +0.2
1,050,902 + +0.0
1,051,134 + SM_b21526 0.18 +4.2
1,051,136 + SM_b21526 0.18 -2.0
1,051,136 + SM_b21526 0.18 -1.2
1,051,207 + SM_b21526 0.25 -1.3
1,051,207 + SM_b21526 0.25 -0.7
1,051,208 - SM_b21526 0.25 -0.3
1,051,208 - SM_b21526 0.25 +0.8
1,051,420 + SM_b21526 0.46 +0.1
1,051,512 + SM_b21526 0.55 -1.7
1,051,512 + SM_b21526 0.55 -0.9
1,051,513 - SM_b21526 0.55 +0.0
1,051,686 + SM_b21526 0.72 -1.5
1,051,686 + SM_b21526 0.72 +0.4
1,051,779 - SM_b21526 0.81 -0.8
1,051,835 + SM_b21526 0.86 +0.8
1,051,835 + SM_b21526 0.86 +0.8
1,051,926 + -0.1
1,051,927 - -0.8
1,051,927 - +1.1
1,051,950 + +0.0
1,052,356 - SM_b21527 0.36 +0.3
1,052,464 + SM_b21527 0.49 +0.6
1,052,465 - SM_b21527 0.50 +0.2
1,052,719 - SM_b21527 0.81 +1.3
1,052,719 - SM_b21527 0.81 +1.1
1,052,722 + SM_b21527 0.81 -0.4
1,052,722 + SM_b21527 0.81 +0.7
1,052,722 + SM_b21527 0.81 -0.2
1,052,723 - SM_b21527 0.81 +0.1
1,052,723 - SM_b21527 0.81 +0.3
1,052,723 - SM_b21527 0.81 +0.2
1,052,723 - SM_b21527 0.81 -0.8
1,052,828 - +1.3
1,052,915 + -0.4
1,052,915 + +0.4
1,052,915 + -2.2
1,052,915 + +1.2
1,052,917 - -0.1

Or see this region's nucleotide sequence