Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21284

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21283 and SM_b21284 are separated by 9 nucleotidesSM_b21284 and SM_b21285 are separated by 167 nucleotidesSM_b21285 and SM_b21286 are separated by 5 nucleotides SM_b21283: SM_b21283 - allantoicase, at 857,872 to 858,894 _b21283 SM_b21284: SM_b21284 - uricase, at 858,904 to 860,319 _b21284 SM_b21285: SM_b21285 - transthyretin-like protein, at 860,487 to 860,858 _b21285 SM_b21286: SM_b21286 - xanthine dehydrogenase, at 860,864 to 862,345 _b21286 Position (kb) 858 859 860 861Strain fitness (log2 ratio) -3 -2 -1 0 1at 857.993 kb on + strand, within SM_b21283at 857.994 kb on - strand, within SM_b21283at 858.255 kb on + strand, within SM_b21283at 858.297 kb on - strand, within SM_b21283at 858.456 kb on - strand, within SM_b21283at 858.456 kb on - strand, within SM_b21283at 858.594 kb on - strand, within SM_b21283at 858.669 kb on - strand, within SM_b21283at 858.770 kb on - strand, within SM_b21283at 858.774 kb on + strand, within SM_b21283at 858.774 kb on + strand, within SM_b21283at 858.775 kb on - strand, within SM_b21283at 858.775 kb on - strand, within SM_b21283at 859.357 kb on + strand, within SM_b21284at 859.357 kb on + strand, within SM_b21284at 859.430 kb on + strand, within SM_b21284at 859.446 kb on - strand, within SM_b21284at 859.499 kb on + strand, within SM_b21284at 859.499 kb on + strand, within SM_b21284at 859.500 kb on - strand, within SM_b21284at 859.632 kb on - strand, within SM_b21284at 859.632 kb on - strand, within SM_b21284at 859.703 kb on + strand, within SM_b21284at 859.703 kb on + strand, within SM_b21284at 859.764 kb on - strand, within SM_b21284at 859.779 kb on - strand, within SM_b21284at 859.838 kb on + strand, within SM_b21284at 859.839 kb on - strand, within SM_b21284at 860.045 kb on - strand, within SM_b21284at 860.105 kb on + strand, within SM_b21284at 860.226 kb on - strandat 860.274 kb on + strandat 860.319 kb on + strandat 860.320 kb on - strandat 860.320 kb on - strandat 860.360 kb on + strandat 860.688 kb on + strand, within SM_b21285at 860.689 kb on - strand, within SM_b21285at 860.689 kb on - strand, within SM_b21285at 860.689 kb on - strand, within SM_b21285at 860.802 kb on + strand, within SM_b21285at 860.802 kb on + strand, within SM_b21285at 860.802 kb on + strand, within SM_b21285at 860.803 kb on - strand, within SM_b21285at 860.803 kb on - strand, within SM_b21285at 860.829 kb on + strandat 860.835 kb on + strandat 860.836 kb on - strandat 860.844 kb on + strandat 860.845 kb on - strandat 860.845 kb on - strandat 861.240 kb on - strand, within SM_b21286

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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857,993 + SM_b21283 0.12 +1.5
857,994 - SM_b21283 0.12 -0.5
858,255 + SM_b21283 0.37 -1.0
858,297 - SM_b21283 0.42 -0.2
858,456 - SM_b21283 0.57 +0.4
858,456 - SM_b21283 0.57 -0.1
858,594 - SM_b21283 0.71 +0.3
858,669 - SM_b21283 0.78 +0.9
858,770 - SM_b21283 0.88 -3.6
858,774 + SM_b21283 0.88 +0.8
858,774 + SM_b21283 0.88 -3.1
858,775 - SM_b21283 0.88 -1.0
858,775 - SM_b21283 0.88 -2.5
859,357 + SM_b21284 0.32 +0.3
859,357 + SM_b21284 0.32 +0.9
859,430 + SM_b21284 0.37 -0.0
859,446 - SM_b21284 0.38 -0.8
859,499 + SM_b21284 0.42 +1.0
859,499 + SM_b21284 0.42 -0.1
859,500 - SM_b21284 0.42 -2.5
859,632 - SM_b21284 0.51 -1.6
859,632 - SM_b21284 0.51 -1.2
859,703 + SM_b21284 0.56 -0.3
859,703 + SM_b21284 0.56 -0.1
859,764 - SM_b21284 0.61 +0.1
859,779 - SM_b21284 0.62 -1.1
859,838 + SM_b21284 0.66 -0.0
859,839 - SM_b21284 0.66 -0.3
860,045 - SM_b21284 0.81 +0.8
860,105 + SM_b21284 0.85 -2.6
860,226 - -0.3
860,274 + -0.8
860,319 + -0.2
860,320 - +0.4
860,320 - +0.1
860,360 + +1.0
860,688 + SM_b21285 0.54 +0.6
860,689 - SM_b21285 0.54 +0.2
860,689 - SM_b21285 0.54 -3.2
860,689 - SM_b21285 0.54 +1.4
860,802 + SM_b21285 0.85 -2.0
860,802 + SM_b21285 0.85 -0.2
860,802 + SM_b21285 0.85 +1.6
860,803 - SM_b21285 0.85 +0.5
860,803 - SM_b21285 0.85 -0.4
860,829 + -1.9
860,835 + -0.1
860,836 - -1.4
860,844 + +0.8
860,845 - +0.8
860,845 - -0.2
861,240 - SM_b21286 0.25 +0.4

Or see this region's nucleotide sequence