Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20747

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20745 and SM_b20746 are separated by 563 nucleotidesSM_b20746 and SM_b20747 are separated by 19 nucleotidesSM_b20747 and SM_b20748 are separated by 151 nucleotides SM_b20745: SM_b20745 - glutatmine synthetase II protein, at 1,533,876 to 1,534,910 _b20745 SM_b20746: SM_b20746 - hypothetical protein, at 1,535,474 to 1,535,659 _b20746 SM_b20747: SM_b20747 - hypothetical protein, at 1,535,679 to 1,536,353 _b20747 SM_b20748: SM_b20748 - glycosyltransferase, at 1,536,505 to 1,537,569 _b20748 Position (kb) 1535 1536 1537Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1534.888 kb on + strandat 1534.888 kb on + strandat 1534.900 kb on + strandat 1534.900 kb on + strandat 1534.900 kb on + strandat 1534.900 kb on + strandat 1534.900 kb on + strandat 1534.901 kb on - strandat 1534.925 kb on - strandat 1535.054 kb on + strandat 1535.054 kb on + strandat 1535.346 kb on + strandat 1535.347 kb on - strandat 1535.347 kb on - strandat 1535.347 kb on - strandat 1535.440 kb on + strandat 1535.441 kb on - strandat 1535.441 kb on - strandat 1535.441 kb on - strandat 1535.622 kb on - strand, within SM_b20746at 1535.670 kb on + strandat 1535.840 kb on + strand, within SM_b20747at 1535.840 kb on + strand, within SM_b20747at 1535.841 kb on - strand, within SM_b20747at 1535.926 kb on + strand, within SM_b20747at 1535.926 kb on + strand, within SM_b20747at 1535.927 kb on - strand, within SM_b20747at 1535.927 kb on - strand, within SM_b20747at 1535.958 kb on + strand, within SM_b20747at 1536.032 kb on - strand, within SM_b20747at 1536.032 kb on - strand, within SM_b20747at 1536.032 kb on - strand, within SM_b20747at 1536.060 kb on + strand, within SM_b20747at 1536.061 kb on - strand, within SM_b20747at 1536.061 kb on - strand, within SM_b20747at 1536.090 kb on + strand, within SM_b20747at 1536.090 kb on + strand, within SM_b20747at 1536.090 kb on + strand, within SM_b20747at 1536.090 kb on + strand, within SM_b20747at 1536.090 kb on + strand, within SM_b20747at 1536.090 kb on + strand, within SM_b20747at 1536.090 kb on + strand, within SM_b20747at 1536.091 kb on - strand, within SM_b20747at 1536.091 kb on - strand, within SM_b20747at 1536.091 kb on - strand, within SM_b20747at 1536.091 kb on - strand, within SM_b20747at 1536.091 kb on - strand, within SM_b20747at 1536.091 kb on - strand, within SM_b20747at 1536.092 kb on + strand, within SM_b20747at 1536.092 kb on + strand, within SM_b20747at 1536.092 kb on + strand, within SM_b20747at 1536.092 kb on + strand, within SM_b20747at 1536.092 kb on + strand, within SM_b20747at 1536.092 kb on + strand, within SM_b20747at 1536.092 kb on + strand, within SM_b20747at 1536.093 kb on - strand, within SM_b20747at 1536.093 kb on - strand, within SM_b20747at 1536.093 kb on - strand, within SM_b20747at 1536.113 kb on - strand, within SM_b20747at 1536.460 kb on + strandat 1536.461 kb on - strandat 1536.817 kb on + strand, within SM_b20748at 1536.981 kb on - strand, within SM_b20748at 1537.004 kb on + strand, within SM_b20748at 1537.005 kb on - strand, within SM_b20748at 1537.103 kb on + strand, within SM_b20748at 1537.275 kb on - strand, within SM_b20748at 1537.280 kb on + strand, within SM_b20748at 1537.280 kb on + strand, within SM_b20748at 1537.281 kb on - strand, within SM_b20748at 1537.281 kb on - strand, within SM_b20748

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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1,534,888 + -1.9
1,534,888 + -1.8
1,534,900 + -4.4
1,534,900 + -1.0
1,534,900 + +0.3
1,534,900 + -0.8
1,534,900 + -1.1
1,534,901 - +0.5
1,534,925 - -1.8
1,535,054 + +0.6
1,535,054 + -0.2
1,535,346 + +0.8
1,535,347 - -1.7
1,535,347 - -1.1
1,535,347 - -2.7
1,535,440 + -0.5
1,535,441 - -3.0
1,535,441 - -0.4
1,535,441 - -0.6
1,535,622 - SM_b20746 0.80 +0.8
1,535,670 + +0.7
1,535,840 + SM_b20747 0.24 +0.0
1,535,840 + SM_b20747 0.24 +2.5
1,535,841 - SM_b20747 0.24 -2.8
1,535,926 + SM_b20747 0.37 -0.5
1,535,926 + SM_b20747 0.37 +0.0
1,535,927 - SM_b20747 0.37 +0.2
1,535,927 - SM_b20747 0.37 -0.2
1,535,958 + SM_b20747 0.41 -0.1
1,536,032 - SM_b20747 0.52 +2.4
1,536,032 - SM_b20747 0.52 -2.8
1,536,032 - SM_b20747 0.52 +0.1
1,536,060 + SM_b20747 0.56 +0.1
1,536,061 - SM_b20747 0.57 +0.1
1,536,061 - SM_b20747 0.57 -0.6
1,536,090 + SM_b20747 0.61 +0.5
1,536,090 + SM_b20747 0.61 -3.0
1,536,090 + SM_b20747 0.61 +1.7
1,536,090 + SM_b20747 0.61 -0.7
1,536,090 + SM_b20747 0.61 +2.4
1,536,090 + SM_b20747 0.61 +0.9
1,536,090 + SM_b20747 0.61 +0.8
1,536,091 - SM_b20747 0.61 -0.1
1,536,091 - SM_b20747 0.61 -0.9
1,536,091 - SM_b20747 0.61 -0.8
1,536,091 - SM_b20747 0.61 -0.4
1,536,091 - SM_b20747 0.61 -0.2
1,536,091 - SM_b20747 0.61 -2.8
1,536,092 + SM_b20747 0.61 +0.4
1,536,092 + SM_b20747 0.61 -0.1
1,536,092 + SM_b20747 0.61 -1.4
1,536,092 + SM_b20747 0.61 +0.2
1,536,092 + SM_b20747 0.61 +0.4
1,536,092 + SM_b20747 0.61 -2.2
1,536,092 + SM_b20747 0.61 -0.3
1,536,093 - SM_b20747 0.61 -0.2
1,536,093 - SM_b20747 0.61 +0.0
1,536,093 - SM_b20747 0.61 -0.3
1,536,113 - SM_b20747 0.64 -0.3
1,536,460 + +1.1
1,536,461 - +0.8
1,536,817 + SM_b20748 0.29 -0.4
1,536,981 - SM_b20748 0.45 -0.2
1,537,004 + SM_b20748 0.47 +1.1
1,537,005 - SM_b20748 0.47 +0.5
1,537,103 + SM_b20748 0.56 -0.5
1,537,275 - SM_b20748 0.72 -0.4
1,537,280 + SM_b20748 0.73 +1.0
1,537,280 + SM_b20748 0.73 -1.0
1,537,281 - SM_b20748 0.73 -0.5
1,537,281 - SM_b20748 0.73 -0.9

Or see this region's nucleotide sequence