Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20692 and SM_b20694 are separated by 575 nucleotides SM_b20694 and SM_b20695 are separated by 80 nucleotides SM_b20695 and SM_b20696 overlap by 4 nucleotides SM_b20696 and SM_b20697 are separated by 101 nucleotides
SM_b20692: SM_b20692 - 5-keto-D-gluconate 5-reductase, at 1,494,126 to 1,494,932
_b20692
SM_b20694: SM_b20694 - hypothetical protein, at 1,495,508 to 1,495,684
_b20694
SM_b20695: SM_b20695 - hypothetical protein, at 1,495,765 to 1,496,271
_b20695
SM_b20696: SM_b20696 - hypothetical protein, at 1,496,268 to 1,496,753
_b20696
SM_b20697: SM_b20697 - peptidase, arginine utilization protein RocB, at 1,496,855 to 1,498,549
_b20697
Position (kb)
1495
1496
1497 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1494.782 kb on + strand, within SM_b20692 at 1495.013 kb on - strand at 1495.238 kb on + strand at 1495.351 kb on + strand at 1495.351 kb on + strand at 1495.351 kb on + strand at 1495.351 kb on + strand at 1495.471 kb on - strand at 1495.471 kb on - strand at 1495.566 kb on + strand at 1495.682 kb on + strand at 1495.738 kb on + strand at 1495.827 kb on - strand, within SM_b20695 at 1495.870 kb on - strand, within SM_b20695 at 1495.870 kb on - strand, within SM_b20695 at 1495.870 kb on - strand, within SM_b20695 at 1496.006 kb on + strand, within SM_b20695 at 1496.006 kb on + strand, within SM_b20695 at 1496.007 kb on - strand, within SM_b20695 at 1496.007 kb on - strand, within SM_b20695 at 1496.007 kb on - strand, within SM_b20695 at 1496.046 kb on + strand, within SM_b20695 at 1496.047 kb on - strand, within SM_b20695 at 1496.079 kb on + strand, within SM_b20695 at 1496.126 kb on + strand, within SM_b20695 at 1496.145 kb on + strand, within SM_b20695 at 1496.275 kb on + strand at 1496.275 kb on + strand at 1496.275 kb on + strand at 1496.276 kb on - strand at 1496.276 kb on - strand at 1496.276 kb on - strand at 1496.276 kb on - strand at 1496.276 kb on - strand at 1496.364 kb on + strand, within SM_b20696 at 1496.420 kb on + strand, within SM_b20696 at 1496.433 kb on + strand, within SM_b20696 at 1496.531 kb on + strand, within SM_b20696 at 1496.531 kb on + strand, within SM_b20696 at 1496.532 kb on - strand, within SM_b20696 at 1496.532 kb on - strand, within SM_b20696 at 1496.535 kb on + strand, within SM_b20696 at 1496.535 kb on + strand, within SM_b20696 at 1496.535 kb on + strand, within SM_b20696 at 1496.536 kb on - strand, within SM_b20696 at 1496.536 kb on - strand, within SM_b20696 at 1496.686 kb on - strand, within SM_b20696 at 1496.766 kb on - strand at 1496.766 kb on - strand at 1496.786 kb on + strand at 1496.787 kb on - strand at 1496.844 kb on - strand at 1496.931 kb on + strand at 1496.932 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 1,494,782 + SM_b20692 0.81 +0.2 1,495,013 - +0.8 1,495,238 + -1.3 1,495,351 + -0.6 1,495,351 + +1.6 1,495,351 + -0.4 1,495,351 + -0.6 1,495,471 - +1.5 1,495,471 - -0.1 1,495,566 + +0.1 1,495,682 + +0.1 1,495,738 + -0.2 1,495,827 - SM_b20695 0.12 +2.2 1,495,870 - SM_b20695 0.21 -0.5 1,495,870 - SM_b20695 0.21 +0.1 1,495,870 - SM_b20695 0.21 -4.5 1,496,006 + SM_b20695 0.48 +0.5 1,496,006 + SM_b20695 0.48 +0.1 1,496,007 - SM_b20695 0.48 +0.3 1,496,007 - SM_b20695 0.48 -0.6 1,496,007 - SM_b20695 0.48 +0.9 1,496,046 + SM_b20695 0.55 +1.4 1,496,047 - SM_b20695 0.56 -2.4 1,496,079 + SM_b20695 0.62 -0.1 1,496,126 + SM_b20695 0.71 +0.9 1,496,145 + SM_b20695 0.75 +0.6 1,496,275 + -0.3 1,496,275 + +1.2 1,496,275 + +0.1 1,496,276 - -2.7 1,496,276 - -1.2 1,496,276 - -1.0 1,496,276 - -1.5 1,496,276 - +4.5 1,496,364 + SM_b20696 0.20 -0.8 1,496,420 + SM_b20696 0.31 -1.4 1,496,433 + SM_b20696 0.34 +0.1 1,496,531 + SM_b20696 0.54 -0.1 1,496,531 + SM_b20696 0.54 +0.3 1,496,532 - SM_b20696 0.54 -0.5 1,496,532 - SM_b20696 0.54 -0.7 1,496,535 + SM_b20696 0.55 +0.6 1,496,535 + SM_b20696 0.55 +0.4 1,496,535 + SM_b20696 0.55 +0.4 1,496,536 - SM_b20696 0.55 +0.2 1,496,536 - SM_b20696 0.55 -0.7 1,496,686 - SM_b20696 0.86 -0.5 1,496,766 - -1.3 1,496,766 - -0.8 1,496,786 + +0.4 1,496,787 - -0.8 1,496,844 - +1.0 1,496,931 + -1.3 1,496,932 - +4.2
Or see this region's nucleotide sequence