Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20695

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20692 and SM_b20694 are separated by 575 nucleotidesSM_b20694 and SM_b20695 are separated by 80 nucleotidesSM_b20695 and SM_b20696 overlap by 4 nucleotidesSM_b20696 and SM_b20697 are separated by 101 nucleotides SM_b20692: SM_b20692 - 5-keto-D-gluconate 5-reductase, at 1,494,126 to 1,494,932 _b20692 SM_b20694: SM_b20694 - hypothetical protein, at 1,495,508 to 1,495,684 _b20694 SM_b20695: SM_b20695 - hypothetical protein, at 1,495,765 to 1,496,271 _b20695 SM_b20696: SM_b20696 - hypothetical protein, at 1,496,268 to 1,496,753 _b20696 SM_b20697: SM_b20697 - peptidase, arginine utilization protein RocB, at 1,496,855 to 1,498,549 _b20697 Position (kb) 1495 1496 1497Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1494.782 kb on + strand, within SM_b20692at 1495.013 kb on - strandat 1495.238 kb on + strandat 1495.351 kb on + strandat 1495.351 kb on + strandat 1495.351 kb on + strandat 1495.351 kb on + strandat 1495.471 kb on - strandat 1495.471 kb on - strandat 1495.566 kb on + strandat 1495.682 kb on + strandat 1495.738 kb on + strandat 1495.827 kb on - strand, within SM_b20695at 1495.870 kb on - strand, within SM_b20695at 1495.870 kb on - strand, within SM_b20695at 1495.870 kb on - strand, within SM_b20695at 1496.006 kb on + strand, within SM_b20695at 1496.006 kb on + strand, within SM_b20695at 1496.007 kb on - strand, within SM_b20695at 1496.007 kb on - strand, within SM_b20695at 1496.007 kb on - strand, within SM_b20695at 1496.046 kb on + strand, within SM_b20695at 1496.047 kb on - strand, within SM_b20695at 1496.079 kb on + strand, within SM_b20695at 1496.126 kb on + strand, within SM_b20695at 1496.145 kb on + strand, within SM_b20695at 1496.275 kb on + strandat 1496.275 kb on + strandat 1496.275 kb on + strandat 1496.276 kb on - strandat 1496.276 kb on - strandat 1496.276 kb on - strandat 1496.276 kb on - strandat 1496.276 kb on - strandat 1496.364 kb on + strand, within SM_b20696at 1496.420 kb on + strand, within SM_b20696at 1496.433 kb on + strand, within SM_b20696at 1496.531 kb on + strand, within SM_b20696at 1496.531 kb on + strand, within SM_b20696at 1496.532 kb on - strand, within SM_b20696at 1496.532 kb on - strand, within SM_b20696at 1496.535 kb on + strand, within SM_b20696at 1496.535 kb on + strand, within SM_b20696at 1496.535 kb on + strand, within SM_b20696at 1496.536 kb on - strand, within SM_b20696at 1496.536 kb on - strand, within SM_b20696at 1496.686 kb on - strand, within SM_b20696at 1496.766 kb on - strandat 1496.766 kb on - strandat 1496.786 kb on + strandat 1496.787 kb on - strandat 1496.844 kb on - strandat 1496.931 kb on + strandat 1496.932 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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1,494,782 + SM_b20692 0.81 +0.2
1,495,013 - +0.8
1,495,238 + -1.3
1,495,351 + -0.6
1,495,351 + +1.6
1,495,351 + -0.4
1,495,351 + -0.6
1,495,471 - +1.5
1,495,471 - -0.1
1,495,566 + +0.1
1,495,682 + +0.1
1,495,738 + -0.2
1,495,827 - SM_b20695 0.12 +2.2
1,495,870 - SM_b20695 0.21 -0.5
1,495,870 - SM_b20695 0.21 +0.1
1,495,870 - SM_b20695 0.21 -4.5
1,496,006 + SM_b20695 0.48 +0.5
1,496,006 + SM_b20695 0.48 +0.1
1,496,007 - SM_b20695 0.48 +0.3
1,496,007 - SM_b20695 0.48 -0.6
1,496,007 - SM_b20695 0.48 +0.9
1,496,046 + SM_b20695 0.55 +1.4
1,496,047 - SM_b20695 0.56 -2.4
1,496,079 + SM_b20695 0.62 -0.1
1,496,126 + SM_b20695 0.71 +0.9
1,496,145 + SM_b20695 0.75 +0.6
1,496,275 + -0.3
1,496,275 + +1.2
1,496,275 + +0.1
1,496,276 - -2.7
1,496,276 - -1.2
1,496,276 - -1.0
1,496,276 - -1.5
1,496,276 - +4.5
1,496,364 + SM_b20696 0.20 -0.8
1,496,420 + SM_b20696 0.31 -1.4
1,496,433 + SM_b20696 0.34 +0.1
1,496,531 + SM_b20696 0.54 -0.1
1,496,531 + SM_b20696 0.54 +0.3
1,496,532 - SM_b20696 0.54 -0.5
1,496,532 - SM_b20696 0.54 -0.7
1,496,535 + SM_b20696 0.55 +0.6
1,496,535 + SM_b20696 0.55 +0.4
1,496,535 + SM_b20696 0.55 +0.4
1,496,536 - SM_b20696 0.55 +0.2
1,496,536 - SM_b20696 0.55 -0.7
1,496,686 - SM_b20696 0.86 -0.5
1,496,766 - -1.3
1,496,766 - -0.8
1,496,786 + +0.4
1,496,787 - -0.8
1,496,844 - +1.0
1,496,931 + -1.3
1,496,932 - +4.2

Or see this region's nucleotide sequence