Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20614 and SM_b20615 are separated by 376 nucleotides SM_b20615 and SM_b20616 are separated by 1 nucleotides
SM_b20614: SM_b20614 - hypothetical protein, at 1,631,510 to 1,633,567
_b20614
SM_b20615: SM_b20615 - thiamine biosynthesis protein ThiC, at 1,633,944 to 1,635,779
_b20615
SM_b20616: SM_b20616 - thiamine biosynthesis oxidoreductase, at 1,635,781 to 1,636,758
_b20616
Position (kb)
1633
1634
1635
1636 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1633.168 kb on - strand, within SM_b20614 at 1633.235 kb on + strand, within SM_b20614 at 1633.235 kb on + strand, within SM_b20614 at 1633.236 kb on - strand, within SM_b20614 at 1633.264 kb on + strand, within SM_b20614 at 1633.417 kb on + strand at 1633.418 kb on + strand at 1633.419 kb on - strand at 1633.432 kb on - strand at 1633.432 kb on - strand at 1633.460 kb on + strand at 1633.583 kb on - strand at 1633.727 kb on + strand at 1633.727 kb on + strand at 1633.728 kb on - strand at 1633.770 kb on + strand at 1633.771 kb on - strand at 1633.822 kb on + strand at 1633.951 kb on + strand at 1634.017 kb on - strand at 1634.017 kb on - strand at 1634.017 kb on - strand at 1634.215 kb on - strand, within SM_b20615 at 1634.341 kb on - strand, within SM_b20615 at 1634.766 kb on + strand, within SM_b20615 at 1634.767 kb on - strand, within SM_b20615 at 1634.896 kb on - strand, within SM_b20615 at 1634.897 kb on + strand, within SM_b20615 at 1634.898 kb on - strand, within SM_b20615 at 1634.994 kb on + strand, within SM_b20615 at 1634.995 kb on - strand, within SM_b20615 at 1635.012 kb on - strand, within SM_b20615 at 1635.033 kb on + strand, within SM_b20615 at 1635.033 kb on + strand, within SM_b20615 at 1635.033 kb on + strand, within SM_b20615 at 1635.194 kb on + strand, within SM_b20615 at 1635.194 kb on + strand, within SM_b20615 at 1635.195 kb on - strand, within SM_b20615 at 1635.255 kb on + strand, within SM_b20615 at 1635.257 kb on + strand, within SM_b20615 at 1635.257 kb on + strand, within SM_b20615 at 1635.360 kb on + strand, within SM_b20615 at 1635.361 kb on - strand, within SM_b20615 at 1635.735 kb on + strand at 1635.735 kb on + strand at 1635.735 kb on + strand at 1635.736 kb on - strand at 1635.857 kb on + strand at 1635.858 kb on - strand at 1635.858 kb on - strand at 1636.429 kb on + strand, within SM_b20616 at 1636.431 kb on + strand, within SM_b20616 at 1636.749 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 1,633,168 - SM_b20614 0.81 +1.6 1,633,235 + SM_b20614 0.84 -0.4 1,633,235 + SM_b20614 0.84 -0.0 1,633,236 - SM_b20614 0.84 +0.4 1,633,264 + SM_b20614 0.85 +1.6 1,633,417 + +1.2 1,633,418 + -0.7 1,633,419 - -2.5 1,633,432 - +0.6 1,633,432 - -0.1 1,633,460 + -0.6 1,633,583 - -1.7 1,633,727 + -0.3 1,633,727 + -3.2 1,633,728 - +0.6 1,633,770 + -0.2 1,633,771 - +1.1 1,633,822 + -0.3 1,633,951 + -0.4 1,634,017 - -0.9 1,634,017 - -1.9 1,634,017 - -0.3 1,634,215 - SM_b20615 0.15 -0.9 1,634,341 - SM_b20615 0.22 +0.4 1,634,766 + SM_b20615 0.45 +0.1 1,634,767 - SM_b20615 0.45 -1.4 1,634,896 - SM_b20615 0.52 -0.4 1,634,897 + SM_b20615 0.52 -1.3 1,634,898 - SM_b20615 0.52 -0.7 1,634,994 + SM_b20615 0.57 -0.7 1,634,995 - SM_b20615 0.57 +0.3 1,635,012 - SM_b20615 0.58 -0.0 1,635,033 + SM_b20615 0.59 -0.7 1,635,033 + SM_b20615 0.59 -0.9 1,635,033 + SM_b20615 0.59 -0.5 1,635,194 + SM_b20615 0.68 +0.1 1,635,194 + SM_b20615 0.68 +0.5 1,635,195 - SM_b20615 0.68 -0.7 1,635,255 + SM_b20615 0.71 +0.3 1,635,257 + SM_b20615 0.72 -0.7 1,635,257 + SM_b20615 0.72 +0.0 1,635,360 + SM_b20615 0.77 +0.2 1,635,361 - SM_b20615 0.77 -0.7 1,635,735 + +0.0 1,635,735 + -1.4 1,635,735 + +0.1 1,635,736 - +0.7 1,635,857 + -1.1 1,635,858 - +0.5 1,635,858 - -1.2 1,636,429 + SM_b20616 0.66 -0.9 1,636,431 + SM_b20616 0.66 +0.8 1,636,749 + -0.4
Or see this region's nucleotide sequence