Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20615

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20614 and SM_b20615 are separated by 376 nucleotidesSM_b20615 and SM_b20616 are separated by 1 nucleotides SM_b20614: SM_b20614 - hypothetical protein, at 1,631,510 to 1,633,567 _b20614 SM_b20615: SM_b20615 - thiamine biosynthesis protein ThiC, at 1,633,944 to 1,635,779 _b20615 SM_b20616: SM_b20616 - thiamine biosynthesis oxidoreductase, at 1,635,781 to 1,636,758 _b20616 Position (kb) 1633 1634 1635 1636Strain fitness (log2 ratio) -3 -2 -1 0 1at 1633.168 kb on - strand, within SM_b20614at 1633.235 kb on + strand, within SM_b20614at 1633.235 kb on + strand, within SM_b20614at 1633.236 kb on - strand, within SM_b20614at 1633.264 kb on + strand, within SM_b20614at 1633.417 kb on + strandat 1633.418 kb on + strandat 1633.419 kb on - strandat 1633.432 kb on - strandat 1633.432 kb on - strandat 1633.460 kb on + strandat 1633.583 kb on - strandat 1633.727 kb on + strandat 1633.727 kb on + strandat 1633.728 kb on - strandat 1633.770 kb on + strandat 1633.771 kb on - strandat 1633.822 kb on + strandat 1633.951 kb on + strandat 1634.017 kb on - strandat 1634.017 kb on - strandat 1634.017 kb on - strandat 1634.215 kb on - strand, within SM_b20615at 1634.341 kb on - strand, within SM_b20615at 1634.766 kb on + strand, within SM_b20615at 1634.767 kb on - strand, within SM_b20615at 1634.896 kb on - strand, within SM_b20615at 1634.897 kb on + strand, within SM_b20615at 1634.898 kb on - strand, within SM_b20615at 1634.994 kb on + strand, within SM_b20615at 1634.995 kb on - strand, within SM_b20615at 1635.012 kb on - strand, within SM_b20615at 1635.033 kb on + strand, within SM_b20615at 1635.033 kb on + strand, within SM_b20615at 1635.033 kb on + strand, within SM_b20615at 1635.194 kb on + strand, within SM_b20615at 1635.194 kb on + strand, within SM_b20615at 1635.195 kb on - strand, within SM_b20615at 1635.255 kb on + strand, within SM_b20615at 1635.257 kb on + strand, within SM_b20615at 1635.257 kb on + strand, within SM_b20615at 1635.360 kb on + strand, within SM_b20615at 1635.361 kb on - strand, within SM_b20615at 1635.735 kb on + strandat 1635.735 kb on + strandat 1635.735 kb on + strandat 1635.736 kb on - strandat 1635.857 kb on + strandat 1635.858 kb on - strandat 1635.858 kb on - strandat 1636.429 kb on + strand, within SM_b20616at 1636.431 kb on + strand, within SM_b20616at 1636.749 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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1,633,168 - SM_b20614 0.81 +1.6
1,633,235 + SM_b20614 0.84 -0.4
1,633,235 + SM_b20614 0.84 -0.0
1,633,236 - SM_b20614 0.84 +0.4
1,633,264 + SM_b20614 0.85 +1.6
1,633,417 + +1.2
1,633,418 + -0.7
1,633,419 - -2.5
1,633,432 - +0.6
1,633,432 - -0.1
1,633,460 + -0.6
1,633,583 - -1.7
1,633,727 + -0.3
1,633,727 + -3.2
1,633,728 - +0.6
1,633,770 + -0.2
1,633,771 - +1.1
1,633,822 + -0.3
1,633,951 + -0.4
1,634,017 - -0.9
1,634,017 - -1.9
1,634,017 - -0.3
1,634,215 - SM_b20615 0.15 -0.9
1,634,341 - SM_b20615 0.22 +0.4
1,634,766 + SM_b20615 0.45 +0.1
1,634,767 - SM_b20615 0.45 -1.4
1,634,896 - SM_b20615 0.52 -0.4
1,634,897 + SM_b20615 0.52 -1.3
1,634,898 - SM_b20615 0.52 -0.7
1,634,994 + SM_b20615 0.57 -0.7
1,634,995 - SM_b20615 0.57 +0.3
1,635,012 - SM_b20615 0.58 -0.0
1,635,033 + SM_b20615 0.59 -0.7
1,635,033 + SM_b20615 0.59 -0.9
1,635,033 + SM_b20615 0.59 -0.5
1,635,194 + SM_b20615 0.68 +0.1
1,635,194 + SM_b20615 0.68 +0.5
1,635,195 - SM_b20615 0.68 -0.7
1,635,255 + SM_b20615 0.71 +0.3
1,635,257 + SM_b20615 0.72 -0.7
1,635,257 + SM_b20615 0.72 +0.0
1,635,360 + SM_b20615 0.77 +0.2
1,635,361 - SM_b20615 0.77 -0.7
1,635,735 + +0.0
1,635,735 + -1.4
1,635,735 + +0.1
1,635,736 - +0.7
1,635,857 + -1.1
1,635,858 - +0.5
1,635,858 - -1.2
1,636,429 + SM_b20616 0.66 -0.9
1,636,431 + SM_b20616 0.66 +0.8
1,636,749 + -0.4

Or see this region's nucleotide sequence