Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20487 and SM_b20488 are separated by 2 nucleotides SM_b20488 and SM_b20489 are separated by 44 nucleotides SM_b20489 and SM_b20490 overlap by 8 nucleotides SM_b20490 and SM_b22020 are separated by 107 nucleotides
SM_b20487: SM_b20487 - sugar ABC transporter permease, at 503,453 to 504,451
_b20487
SM_b20488: SM_b20488 - hypothetical protein, at 504,454 to 505,302
_b20488
SM_b20489: SM_b20489 - carbohydrate kinase, at 505,347 to 506,819
_b20489
SM_b20490: SM_b20490 - L-fuculose phosphate aldolase, at 506,812 to 507,510
_b20490
SM_b22020: SM_b22020 - hypothetical protein, at 507,618 to 508,478
_b22020
Position (kb) 505
506
507 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 504.475 kb on - strand at 504.475 kb on - strand at 504.475 kb on - strand at 504.475 kb on - strand at 504.475 kb on - strand at 504.475 kb on - strand at 504.541 kb on + strand, within SM_b20488 at 504.541 kb on + strand, within SM_b20488 at 504.541 kb on + strand, within SM_b20488 at 504.542 kb on - strand, within SM_b20488 at 504.542 kb on - strand, within SM_b20488 at 504.763 kb on + strand, within SM_b20488 at 504.763 kb on + strand, within SM_b20488 at 504.763 kb on + strand, within SM_b20488 at 504.764 kb on - strand, within SM_b20488 at 504.812 kb on - strand, within SM_b20488 at 504.819 kb on + strand, within SM_b20488 at 504.985 kb on - strand, within SM_b20488 at 504.988 kb on + strand, within SM_b20488 at 504.988 kb on + strand, within SM_b20488 at 504.988 kb on + strand, within SM_b20488 at 504.989 kb on - strand, within SM_b20488 at 505.026 kb on + strand, within SM_b20488 at 505.055 kb on - strand, within SM_b20488 at 505.198 kb on + strand, within SM_b20488 at 505.199 kb on - strand, within SM_b20488 at 505.199 kb on - strand, within SM_b20488 at 505.695 kb on + strand, within SM_b20489 at 505.696 kb on - strand, within SM_b20489 at 505.696 kb on - strand, within SM_b20489 at 505.698 kb on - strand, within SM_b20489 at 505.773 kb on + strand, within SM_b20489 at 505.774 kb on - strand, within SM_b20489 at 505.822 kb on - strand, within SM_b20489 at 505.822 kb on - strand, within SM_b20489 at 505.840 kb on - strand, within SM_b20489 at 506.084 kb on - strand, within SM_b20489 at 506.245 kb on + strand, within SM_b20489 at 506.467 kb on - strand, within SM_b20489 at 506.467 kb on - strand, within SM_b20489 at 506.467 kb on - strand, within SM_b20489 at 506.616 kb on + strand, within SM_b20489 at 506.617 kb on - strand, within SM_b20489 at 506.965 kb on + strand, within SM_b20490 at 506.966 kb on - strand, within SM_b20490 at 507.016 kb on + strand, within SM_b20490 at 507.016 kb on + strand, within SM_b20490 at 507.016 kb on + strand, within SM_b20490 at 507.016 kb on + strand, within SM_b20490 at 507.016 kb on + strand, within SM_b20490 at 507.017 kb on - strand, within SM_b20490 at 507.017 kb on - strand, within SM_b20490 at 507.017 kb on - strand, within SM_b20490 at 507.017 kb on - strand, within SM_b20490 at 507.017 kb on - strand, within SM_b20490 at 507.112 kb on + strand, within SM_b20490 at 507.113 kb on - strand, within SM_b20490 at 507.160 kb on + strand, within SM_b20490 at 507.160 kb on + strand, within SM_b20490 at 507.205 kb on + strand, within SM_b20490 at 507.296 kb on + strand, within SM_b20490 at 507.364 kb on + strand, within SM_b20490 at 507.364 kb on + strand, within SM_b20490 at 507.365 kb on - strand, within SM_b20490 at 507.365 kb on - strand, within SM_b20490 at 507.365 kb on - strand, within SM_b20490 at 507.365 kb on - strand, within SM_b20490 at 507.619 kb on + strand at 507.620 kb on - strand at 507.620 kb on - strand at 507.628 kb on + strand at 507.771 kb on - strand, within SM_b22020 at 507.775 kb on - strand, within SM_b22020 at 507.775 kb on - strand, within SM_b22020
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 504,475 - -0.9 504,475 - +0.3 504,475 - +0.9 504,475 - -0.2 504,475 - +0.7 504,475 - +0.6 504,541 + SM_b20488 0.10 +0.8 504,541 + SM_b20488 0.10 -0.2 504,541 + SM_b20488 0.10 -0.6 504,542 - SM_b20488 0.10 +1.8 504,542 - SM_b20488 0.10 -0.8 504,763 + SM_b20488 0.36 +0.4 504,763 + SM_b20488 0.36 -0.8 504,763 + SM_b20488 0.36 -0.8 504,764 - SM_b20488 0.37 -0.9 504,812 - SM_b20488 0.42 -0.1 504,819 + SM_b20488 0.43 +1.5 504,985 - SM_b20488 0.63 +1.7 504,988 + SM_b20488 0.63 -1.7 504,988 + SM_b20488 0.63 -0.4 504,988 + SM_b20488 0.63 +0.6 504,989 - SM_b20488 0.63 +0.4 505,026 + SM_b20488 0.67 +0.5 505,055 - SM_b20488 0.71 +1.0 505,198 + SM_b20488 0.88 +0.4 505,199 - SM_b20488 0.88 +0.7 505,199 - SM_b20488 0.88 -1.3 505,695 + SM_b20489 0.24 -0.1 505,696 - SM_b20489 0.24 -0.0 505,696 - SM_b20489 0.24 -0.8 505,698 - SM_b20489 0.24 -0.5 505,773 + SM_b20489 0.29 +0.3 505,774 - SM_b20489 0.29 +1.3 505,822 - SM_b20489 0.32 -3.9 505,822 - SM_b20489 0.32 +1.1 505,840 - SM_b20489 0.33 +1.9 506,084 - SM_b20489 0.50 +0.6 506,245 + SM_b20489 0.61 -0.7 506,467 - SM_b20489 0.76 -1.1 506,467 - SM_b20489 0.76 -0.7 506,467 - SM_b20489 0.76 +0.8 506,616 + SM_b20489 0.86 +1.2 506,617 - SM_b20489 0.86 -0.7 506,965 + SM_b20490 0.22 -1.5 506,966 - SM_b20490 0.22 +0.6 507,016 + SM_b20490 0.29 -0.5 507,016 + SM_b20490 0.29 -0.0 507,016 + SM_b20490 0.29 +0.3 507,016 + SM_b20490 0.29 -0.8 507,016 + SM_b20490 0.29 +1.1 507,017 - SM_b20490 0.29 +0.1 507,017 - SM_b20490 0.29 -0.4 507,017 - SM_b20490 0.29 -2.5 507,017 - SM_b20490 0.29 -0.6 507,017 - SM_b20490 0.29 -0.2 507,112 + SM_b20490 0.43 +0.0 507,113 - SM_b20490 0.43 -0.8 507,160 + SM_b20490 0.50 -0.9 507,160 + SM_b20490 0.50 +0.7 507,205 + SM_b20490 0.56 +0.3 507,296 + SM_b20490 0.69 -0.6 507,364 + SM_b20490 0.79 -0.6 507,364 + SM_b20490 0.79 -0.9 507,365 - SM_b20490 0.79 +0.2 507,365 - SM_b20490 0.79 -1.9 507,365 - SM_b20490 0.79 +0.9 507,365 - SM_b20490 0.79 -3.0 507,619 + +0.2 507,620 - +0.4 507,620 - -1.1 507,628 + -0.2 507,771 - SM_b22020 0.18 -0.6 507,775 - SM_b22020 0.18 -1.4 507,775 - SM_b22020 0.18 -1.4
Or see this region's nucleotide sequence