Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20466

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20465 and SM_b20466 are separated by 174 nucleotidesSM_b20466 and SM_b20467 are separated by 248 nucleotides SM_b20465: SM_b20465 - hypothetical protein, at 477,065 to 478,135 _b20465 SM_b20466: SM_b20466 - glucanase, at 478,310 to 479,467 _b20466 SM_b20467: SM_b20467 - sensor kinase, at 479,716 to 481,539 _b20467 Position (kb) 478 479 480Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 477.392 kb on + strand, within SM_b20465at 477.393 kb on - strand, within SM_b20465at 477.394 kb on + strand, within SM_b20465at 477.395 kb on - strand, within SM_b20465at 477.530 kb on + strand, within SM_b20465at 477.531 kb on - strand, within SM_b20465at 477.626 kb on - strand, within SM_b20465at 477.626 kb on - strand, within SM_b20465at 477.692 kb on + strand, within SM_b20465at 477.692 kb on + strand, within SM_b20465at 477.692 kb on + strand, within SM_b20465at 477.693 kb on - strand, within SM_b20465at 477.725 kb on + strand, within SM_b20465at 477.726 kb on - strand, within SM_b20465at 477.726 kb on - strand, within SM_b20465at 477.769 kb on + strand, within SM_b20465at 477.770 kb on - strand, within SM_b20465at 477.916 kb on - strand, within SM_b20465at 478.048 kb on + strandat 478.048 kb on + strandat 478.048 kb on + strandat 478.048 kb on + strandat 478.049 kb on - strandat 478.051 kb on - strandat 478.051 kb on - strandat 478.173 kb on + strandat 478.181 kb on + strandat 478.181 kb on + strandat 478.186 kb on + strandat 478.186 kb on + strandat 478.186 kb on + strandat 478.186 kb on + strandat 478.341 kb on - strandat 478.659 kb on - strand, within SM_b20466at 478.742 kb on - strand, within SM_b20466at 478.788 kb on + strand, within SM_b20466at 478.788 kb on + strand, within SM_b20466at 478.789 kb on - strand, within SM_b20466at 478.789 kb on - strand, within SM_b20466at 478.789 kb on - strand, within SM_b20466at 478.842 kb on + strand, within SM_b20466at 478.986 kb on + strand, within SM_b20466at 478.986 kb on + strand, within SM_b20466at 478.987 kb on - strand, within SM_b20466at 478.987 kb on - strand, within SM_b20466at 478.987 kb on - strand, within SM_b20466at 478.987 kb on - strand, within SM_b20466at 479.041 kb on - strand, within SM_b20466at 479.126 kb on + strand, within SM_b20466at 479.127 kb on - strand, within SM_b20466at 479.127 kb on - strand, within SM_b20466at 479.201 kb on + strand, within SM_b20466at 479.202 kb on - strand, within SM_b20466at 479.289 kb on - strand, within SM_b20466at 479.297 kb on - strand, within SM_b20466at 479.339 kb on + strand, within SM_b20466at 479.339 kb on + strand, within SM_b20466at 479.339 kb on + strand, within SM_b20466at 479.340 kb on - strand, within SM_b20466at 479.578 kb on + strandat 479.596 kb on - strandat 479.605 kb on + strandat 479.768 kb on - strandat 479.768 kb on - strandat 479.868 kb on + strandat 479.869 kb on - strandat 479.895 kb on + strandat 479.956 kb on - strand, within SM_b20467at 479.956 kb on - strand, within SM_b20467at 480.005 kb on - strand, within SM_b20467at 480.005 kb on - strand, within SM_b20467at 480.005 kb on - strand, within SM_b20467at 480.005 kb on - strand, within SM_b20467at 480.014 kb on - strand, within SM_b20467at 480.014 kb on - strand, within SM_b20467at 480.014 kb on - strand, within SM_b20467at 480.242 kb on + strand, within SM_b20467at 480.243 kb on - strand, within SM_b20467at 480.243 kb on - strand, within SM_b20467at 480.244 kb on + strand, within SM_b20467at 480.245 kb on - strand, within SM_b20467at 480.245 kb on - strand, within SM_b20467at 480.245 kb on - strand, within SM_b20467at 480.258 kb on + strand, within SM_b20467at 480.259 kb on - strand, within SM_b20467at 480.261 kb on + strand, within SM_b20467at 480.261 kb on + strand, within SM_b20467at 480.262 kb on - strand, within SM_b20467at 480.262 kb on - strand, within SM_b20467at 480.389 kb on + strand, within SM_b20467at 480.389 kb on + strand, within SM_b20467at 480.390 kb on - strand, within SM_b20467at 480.390 kb on - strand, within SM_b20467at 480.390 kb on - strand, within SM_b20467at 480.457 kb on + strand, within SM_b20467

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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477,392 + SM_b20465 0.31 -0.5
477,393 - SM_b20465 0.31 -0.0
477,394 + SM_b20465 0.31 -0.3
477,395 - SM_b20465 0.31 -0.1
477,530 + SM_b20465 0.43 -3.4
477,531 - SM_b20465 0.44 +0.3
477,626 - SM_b20465 0.52 -1.5
477,626 - SM_b20465 0.52 -0.1
477,692 + SM_b20465 0.59 -0.1
477,692 + SM_b20465 0.59 -0.2
477,692 + SM_b20465 0.59 +0.3
477,693 - SM_b20465 0.59 +0.8
477,725 + SM_b20465 0.62 -1.0
477,726 - SM_b20465 0.62 +1.4
477,726 - SM_b20465 0.62 +0.6
477,769 + SM_b20465 0.66 +0.5
477,770 - SM_b20465 0.66 +0.4
477,916 - SM_b20465 0.79 +1.5
478,048 + +1.4
478,048 + -0.6
478,048 + +0.0
478,048 + +0.5
478,049 - -1.3
478,051 - -0.5
478,051 - -0.0
478,173 + -0.5
478,181 + -0.7
478,181 + -0.5
478,186 + +1.2
478,186 + -0.6
478,186 + -0.0
478,186 + +1.3
478,341 - -0.1
478,659 - SM_b20466 0.30 +0.2
478,742 - SM_b20466 0.37 +1.2
478,788 + SM_b20466 0.41 +0.8
478,788 + SM_b20466 0.41 -0.4
478,789 - SM_b20466 0.41 +0.3
478,789 - SM_b20466 0.41 -0.4
478,789 - SM_b20466 0.41 +0.2
478,842 + SM_b20466 0.46 +0.0
478,986 + SM_b20466 0.58 -0.2
478,986 + SM_b20466 0.58 +0.3
478,987 - SM_b20466 0.58 -1.5
478,987 - SM_b20466 0.58 -1.3
478,987 - SM_b20466 0.58 +0.4
478,987 - SM_b20466 0.58 +0.5
479,041 - SM_b20466 0.63 +0.3
479,126 + SM_b20466 0.70 -0.5
479,127 - SM_b20466 0.71 +0.9
479,127 - SM_b20466 0.71 +0.1
479,201 + SM_b20466 0.77 +0.3
479,202 - SM_b20466 0.77 +1.7
479,289 - SM_b20466 0.85 +2.4
479,297 - SM_b20466 0.85 +0.7
479,339 + SM_b20466 0.89 +0.4
479,339 + SM_b20466 0.89 -1.1
479,339 + SM_b20466 0.89 +0.6
479,340 - SM_b20466 0.89 +0.3
479,578 + +2.7
479,596 - -0.9
479,605 + +0.2
479,768 - +0.2
479,768 - -1.6
479,868 + +0.6
479,869 - +0.1
479,895 + +1.0
479,956 - SM_b20467 0.13 +0.6
479,956 - SM_b20467 0.13 +0.1
480,005 - SM_b20467 0.16 -0.5
480,005 - SM_b20467 0.16 -1.7
480,005 - SM_b20467 0.16 -1.0
480,005 - SM_b20467 0.16 -0.7
480,014 - SM_b20467 0.16 -0.4
480,014 - SM_b20467 0.16 -2.9
480,014 - SM_b20467 0.16 -0.5
480,242 + SM_b20467 0.29 -0.9
480,243 - SM_b20467 0.29 -1.6
480,243 - SM_b20467 0.29 -4.0
480,244 + SM_b20467 0.29 -0.8
480,245 - SM_b20467 0.29 -1.0
480,245 - SM_b20467 0.29 +0.8
480,245 - SM_b20467 0.29 +0.2
480,258 + SM_b20467 0.30 -1.7
480,259 - SM_b20467 0.30 +0.9
480,261 + SM_b20467 0.30 +0.0
480,261 + SM_b20467 0.30 +0.3
480,262 - SM_b20467 0.30 +2.9
480,262 - SM_b20467 0.30 -1.8
480,389 + SM_b20467 0.37 -0.2
480,389 + SM_b20467 0.37 -0.0
480,390 - SM_b20467 0.37 +0.3
480,390 - SM_b20467 0.37 +0.2
480,390 - SM_b20467 0.37 -0.4
480,457 + SM_b20467 0.41 +0.2

Or see this region's nucleotide sequence