Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20406

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20404 and SM_b20405 are separated by 12 nucleotidesSM_b20405 and SM_b20406 are separated by 127 nucleotidesSM_b20406 and SM_b20407 are separated by 8 nucleotides SM_b20404: SM_b20404 - aldehyde dehydrogenase, at 416,859 to 419,099 _b20404 SM_b20405: SM_b20405 - transcriptional regulator, at 419,112 to 419,891 _b20405 SM_b20406: SM_b20406 - 5-oxoprolinase, at 420,019 to 422,133 _b20406 SM_b20407: SM_b20407 - 5-oxoprolinase, at 422,142 to 424,343 _b20407 Position (kb) 420 421 422 423Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 419.060 kb on + strandat 419.182 kb on + strandat 419.183 kb on - strandat 419.183 kb on - strandat 419.183 kb on - strandat 419.530 kb on - strand, within SM_b20405at 419.581 kb on + strand, within SM_b20405at 419.581 kb on + strand, within SM_b20405at 419.676 kb on + strand, within SM_b20405at 419.677 kb on - strand, within SM_b20405at 419.680 kb on + strand, within SM_b20405at 419.680 kb on + strand, within SM_b20405at 419.680 kb on + strand, within SM_b20405at 419.680 kb on + strand, within SM_b20405at 419.681 kb on - strand, within SM_b20405at 419.683 kb on + strand, within SM_b20405at 419.683 kb on + strand, within SM_b20405at 419.684 kb on - strand, within SM_b20405at 419.684 kb on - strand, within SM_b20405at 419.687 kb on + strand, within SM_b20405at 419.687 kb on + strand, within SM_b20405at 419.688 kb on - strand, within SM_b20405at 419.762 kb on - strand, within SM_b20405at 419.808 kb on - strand, within SM_b20405at 419.901 kb on + strandat 419.901 kb on + strandat 419.966 kb on + strandat 419.966 kb on + strandat 419.966 kb on + strandat 419.966 kb on + strandat 419.967 kb on - strandat 419.967 kb on - strandat 419.997 kb on + strandat 419.998 kb on - strandat 420.168 kb on + strandat 420.212 kb on - strandat 420.335 kb on - strand, within SM_b20406at 420.335 kb on - strand, within SM_b20406at 420.335 kb on - strand, within SM_b20406at 420.458 kb on - strand, within SM_b20406at 420.552 kb on - strand, within SM_b20406at 420.619 kb on + strand, within SM_b20406at 420.619 kb on + strand, within SM_b20406at 420.621 kb on + strand, within SM_b20406at 420.621 kb on + strand, within SM_b20406at 420.688 kb on + strand, within SM_b20406at 420.723 kb on + strand, within SM_b20406at 420.741 kb on + strand, within SM_b20406at 420.741 kb on + strand, within SM_b20406at 420.742 kb on - strand, within SM_b20406at 420.866 kb on - strand, within SM_b20406at 420.866 kb on - strand, within SM_b20406at 420.888 kb on + strand, within SM_b20406at 420.888 kb on + strand, within SM_b20406at 420.930 kb on + strand, within SM_b20406at 421.077 kb on - strand, within SM_b20406at 421.192 kb on + strand, within SM_b20406at 421.192 kb on + strand, within SM_b20406at 421.192 kb on + strand, within SM_b20406at 421.280 kb on + strand, within SM_b20406at 421.281 kb on - strand, within SM_b20406at 421.347 kb on + strand, within SM_b20406at 421.510 kb on + strand, within SM_b20406at 421.510 kb on + strand, within SM_b20406at 421.511 kb on - strand, within SM_b20406at 421.511 kb on - strand, within SM_b20406at 421.512 kb on + strand, within SM_b20406at 421.512 kb on + strand, within SM_b20406at 421.513 kb on - strand, within SM_b20406at 421.699 kb on + strand, within SM_b20406at 421.798 kb on + strand, within SM_b20406at 421.798 kb on + strand, within SM_b20406at 421.799 kb on - strand, within SM_b20406at 421.799 kb on - strand, within SM_b20406at 421.799 kb on - strand, within SM_b20406at 421.960 kb on + strandat 421.960 kb on + strandat 421.961 kb on - strandat 421.961 kb on - strandat 421.961 kb on - strandat 421.961 kb on - strandat 421.962 kb on + strandat 421.963 kb on - strandat 421.994 kb on - strandat 422.119 kb on + strandat 422.227 kb on - strandat 422.227 kb on - strandat 422.304 kb on + strandat 422.305 kb on - strandat 422.388 kb on + strand, within SM_b20407at 422.485 kb on - strand, within SM_b20407at 422.542 kb on + strand, within SM_b20407at 422.543 kb on - strand, within SM_b20407at 422.543 kb on - strand, within SM_b20407at 422.591 kb on + strand, within SM_b20407at 422.592 kb on - strand, within SM_b20407at 422.592 kb on - strand, within SM_b20407at 422.751 kb on + strand, within SM_b20407at 422.755 kb on + strand, within SM_b20407at 422.755 kb on + strand, within SM_b20407at 422.756 kb on - strand, within SM_b20407at 422.790 kb on + strand, within SM_b20407at 422.848 kb on + strand, within SM_b20407at 422.880 kb on + strand, within SM_b20407at 422.881 kb on - strand, within SM_b20407at 422.986 kb on - strand, within SM_b20407at 422.986 kb on - strand, within SM_b20407at 423.046 kb on - strand, within SM_b20407at 423.046 kb on - strand, within SM_b20407at 423.046 kb on - strand, within SM_b20407at 423.124 kb on - strand, within SM_b20407

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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419,060 + +1.1
419,182 + -0.8
419,183 - -0.6
419,183 - -0.1
419,183 - -0.4
419,530 - SM_b20405 0.54 -1.2
419,581 + SM_b20405 0.60 -0.2
419,581 + SM_b20405 0.60 -0.4
419,676 + SM_b20405 0.72 +0.2
419,677 - SM_b20405 0.72 -1.0
419,680 + SM_b20405 0.73 +0.8
419,680 + SM_b20405 0.73 +1.3
419,680 + SM_b20405 0.73 +0.2
419,680 + SM_b20405 0.73 -0.3
419,681 - SM_b20405 0.73 +0.5
419,683 + SM_b20405 0.73 -0.7
419,683 + SM_b20405 0.73 -0.0
419,684 - SM_b20405 0.73 +0.6
419,684 - SM_b20405 0.73 -1.2
419,687 + SM_b20405 0.74 -0.4
419,687 + SM_b20405 0.74 -0.6
419,688 - SM_b20405 0.74 +0.1
419,762 - SM_b20405 0.83 +3.1
419,808 - SM_b20405 0.89 +0.2
419,901 + -1.1
419,901 + -0.4
419,966 + -1.4
419,966 + -0.1
419,966 + +0.0
419,966 + -0.3
419,967 - +0.5
419,967 - +0.4
419,997 + -1.8
419,998 - +0.6
420,168 + +0.4
420,212 - -2.4
420,335 - SM_b20406 0.15 -1.5
420,335 - SM_b20406 0.15 -0.4
420,335 - SM_b20406 0.15 +1.1
420,458 - SM_b20406 0.21 -0.3
420,552 - SM_b20406 0.25 -0.6
420,619 + SM_b20406 0.28 +0.0
420,619 + SM_b20406 0.28 -2.9
420,621 + SM_b20406 0.28 +0.7
420,621 + SM_b20406 0.28 -1.2
420,688 + SM_b20406 0.32 -1.1
420,723 + SM_b20406 0.33 -0.3
420,741 + SM_b20406 0.34 -0.2
420,741 + SM_b20406 0.34 +0.5
420,742 - SM_b20406 0.34 -1.1
420,866 - SM_b20406 0.40 +0.2
420,866 - SM_b20406 0.40 -0.5
420,888 + SM_b20406 0.41 -0.1
420,888 + SM_b20406 0.41 -1.3
420,930 + SM_b20406 0.43 -1.5
421,077 - SM_b20406 0.50 -0.1
421,192 + SM_b20406 0.55 -0.6
421,192 + SM_b20406 0.55 -1.7
421,192 + SM_b20406 0.55 -1.9
421,280 + SM_b20406 0.60 +0.4
421,281 - SM_b20406 0.60 +0.3
421,347 + SM_b20406 0.63 +2.2
421,510 + SM_b20406 0.70 -0.6
421,510 + SM_b20406 0.70 +0.2
421,511 - SM_b20406 0.71 -0.0
421,511 - SM_b20406 0.71 +0.7
421,512 + SM_b20406 0.71 +0.8
421,512 + SM_b20406 0.71 -2.3
421,513 - SM_b20406 0.71 -0.7
421,699 + SM_b20406 0.79 +0.4
421,798 + SM_b20406 0.84 -0.9
421,798 + SM_b20406 0.84 -1.5
421,799 - SM_b20406 0.84 -3.2
421,799 - SM_b20406 0.84 -1.8
421,799 - SM_b20406 0.84 -0.1
421,960 + -1.0
421,960 + +0.1
421,961 - +0.2
421,961 - +1.0
421,961 - +1.0
421,961 - +2.7
421,962 + +0.9
421,963 - +0.8
421,994 - -0.3
422,119 + -0.1
422,227 - -0.6
422,227 - -1.2
422,304 + -0.4
422,305 - +0.1
422,388 + SM_b20407 0.11 -1.3
422,485 - SM_b20407 0.16 -1.2
422,542 + SM_b20407 0.18 +0.8
422,543 - SM_b20407 0.18 +0.4
422,543 - SM_b20407 0.18 -0.2
422,591 + SM_b20407 0.20 +0.4
422,592 - SM_b20407 0.20 +1.3
422,592 - SM_b20407 0.20 +0.1
422,751 + SM_b20407 0.28 -0.6
422,755 + SM_b20407 0.28 -0.9
422,755 + SM_b20407 0.28 +0.4
422,756 - SM_b20407 0.28 +0.6
422,790 + SM_b20407 0.29 -0.4
422,848 + SM_b20407 0.32 +0.7
422,880 + SM_b20407 0.34 +0.1
422,881 - SM_b20407 0.34 +2.4
422,986 - SM_b20407 0.38 +0.1
422,986 - SM_b20407 0.38 +0.2
423,046 - SM_b20407 0.41 -0.1
423,046 - SM_b20407 0.41 -0.3
423,046 - SM_b20407 0.41 +1.0
423,124 - SM_b20407 0.45 +1.3

Or see this region's nucleotide sequence