Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20391 and SM_b20392 are separated by 35 nucleotides SM_b20392 and SM_b20393 are separated by 144 nucleotides
SM_b20391: SM_b20391 - cellulose synthase catalytic subunit protein, at 403,650 to 405,644
_b20391
SM_b20392: SM_b20392 - transcriptional regulator NanR, at 405,680 to 406,387
_b20392
SM_b20393: SM_b20393 - ribulose bisphosphate carboxylaseoxygenase, large subunit protein, at 406,532 to 407,788
_b20393
Position (kb) 405
406
407 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 404.691 kb on + strand, within SM_b20391 at 404.692 kb on - strand, within SM_b20391 at 404.776 kb on - strand, within SM_b20391 at 404.776 kb on - strand, within SM_b20391 at 404.807 kb on + strand, within SM_b20391 at 404.808 kb on - strand, within SM_b20391 at 404.896 kb on - strand, within SM_b20391 at 404.896 kb on - strand, within SM_b20391 at 404.932 kb on - strand, within SM_b20391 at 404.960 kb on + strand, within SM_b20391 at 405.078 kb on + strand, within SM_b20391 at 405.079 kb on - strand, within SM_b20391 at 405.080 kb on + strand, within SM_b20391 at 405.081 kb on - strand, within SM_b20391 at 405.483 kb on + strand at 405.483 kb on + strand at 405.483 kb on + strand at 405.484 kb on - strand at 405.484 kb on - strand at 405.487 kb on - strand at 405.501 kb on + strand at 405.501 kb on + strand at 405.502 kb on - strand at 405.547 kb on - strand at 405.681 kb on + strand at 405.681 kb on + strand at 405.682 kb on - strand at 405.682 kb on - strand at 405.682 kb on - strand at 405.699 kb on + strand at 405.700 kb on - strand at 405.803 kb on + strand, within SM_b20392 at 405.804 kb on - strand, within SM_b20392 at 405.886 kb on - strand, within SM_b20392 at 405.887 kb on + strand, within SM_b20392 at 406.076 kb on + strand, within SM_b20392 at 406.076 kb on + strand, within SM_b20392 at 406.077 kb on - strand, within SM_b20392 at 406.207 kb on + strand, within SM_b20392 at 406.208 kb on - strand, within SM_b20392 at 406.208 kb on - strand, within SM_b20392 at 406.517 kb on + strand at 406.517 kb on + strand at 406.518 kb on - strand at 406.536 kb on + strand at 406.536 kb on + strand at 406.547 kb on + strand at 406.547 kb on + strand at 406.682 kb on - strand, within SM_b20393 at 406.836 kb on - strand, within SM_b20393 at 406.836 kb on - strand, within SM_b20393 at 406.836 kb on - strand, within SM_b20393 at 407.055 kb on - strand, within SM_b20393 at 407.174 kb on + strand, within SM_b20393 at 407.174 kb on + strand, within SM_b20393 at 407.175 kb on - strand, within SM_b20393 at 407.187 kb on + strand, within SM_b20393 at 407.188 kb on - strand, within SM_b20393
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 404,691 + SM_b20391 0.52 +0.2 404,692 - SM_b20391 0.52 -0.3 404,776 - SM_b20391 0.56 -1.3 404,776 - SM_b20391 0.56 -0.3 404,807 + SM_b20391 0.58 +0.2 404,808 - SM_b20391 0.58 -0.8 404,896 - SM_b20391 0.62 +1.3 404,896 - SM_b20391 0.62 +0.5 404,932 - SM_b20391 0.64 +0.8 404,960 + SM_b20391 0.66 -0.5 405,078 + SM_b20391 0.72 -0.1 405,079 - SM_b20391 0.72 -3.1 405,080 + SM_b20391 0.72 -1.2 405,081 - SM_b20391 0.72 -1.3 405,483 + -0.2 405,483 + -1.3 405,483 + +2.0 405,484 - +0.5 405,484 - +0.4 405,487 - -1.0 405,501 + +0.3 405,501 + +0.6 405,502 - -1.0 405,547 - +0.7 405,681 + -0.6 405,681 + -0.2 405,682 - +0.3 405,682 - +0.7 405,682 - -2.5 405,699 + +0.3 405,700 - -0.1 405,803 + SM_b20392 0.17 -1.6 405,804 - SM_b20392 0.18 -3.8 405,886 - SM_b20392 0.29 -0.4 405,887 + SM_b20392 0.29 -1.9 406,076 + SM_b20392 0.56 -1.4 406,076 + SM_b20392 0.56 -1.5 406,077 - SM_b20392 0.56 -1.2 406,207 + SM_b20392 0.74 -3.7 406,208 - SM_b20392 0.75 -2.8 406,208 - SM_b20392 0.75 -1.3 406,517 + -2.8 406,517 + +0.3 406,518 - -0.7 406,536 + +1.7 406,536 + +1.3 406,547 + -0.2 406,547 + +0.3 406,682 - SM_b20393 0.12 -0.1 406,836 - SM_b20393 0.24 -0.0 406,836 - SM_b20393 0.24 +0.2 406,836 - SM_b20393 0.24 -0.7 407,055 - SM_b20393 0.42 -0.8 407,174 + SM_b20393 0.51 -0.4 407,174 + SM_b20393 0.51 +1.0 407,175 - SM_b20393 0.51 -0.4 407,187 + SM_b20393 0.52 -0.8 407,188 - SM_b20393 0.52 +1.0
Or see this region's nucleotide sequence