Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20240 and SM_b20241 overlap by 4 nucleotides SM_b20241 and SM_b20242 overlap by 4 nucleotides
SM_b20240: SM_b20240 - hypothetical protein, at 244,260 to 245,378
_b20240
SM_b20241: SM_b20241 - hypothetical protein, at 245,375 to 246,460
_b20241
SM_b20242: SM_b20242 - hypothetical protein, at 246,457 to 247,587
_b20242
Position (kb) 245
246
247 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 244.384 kb on + strand, within SM_b20240 at 244.873 kb on + strand, within SM_b20240 at 245.039 kb on - strand, within SM_b20240 at 245.104 kb on + strand, within SM_b20240 at 245.104 kb on + strand, within SM_b20240 at 245.105 kb on - strand, within SM_b20240 at 245.105 kb on - strand, within SM_b20240 at 245.179 kb on + strand, within SM_b20240 at 245.180 kb on - strand, within SM_b20240 at 245.442 kb on + strand at 245.442 kb on + strand at 245.443 kb on - strand at 245.443 kb on - strand at 245.443 kb on - strand at 245.443 kb on - strand at 245.443 kb on - strand at 245.443 kb on - strand at 245.446 kb on + strand at 245.447 kb on - strand at 245.447 kb on - strand at 245.447 kb on - strand at 245.447 kb on - strand at 245.599 kb on - strand at 245.754 kb on + strand, within SM_b20241 at 245.755 kb on - strand, within SM_b20241 at 245.961 kb on + strand, within SM_b20241 at 245.961 kb on + strand, within SM_b20241 at 245.961 kb on + strand, within SM_b20241 at 245.962 kb on - strand, within SM_b20241 at 245.997 kb on + strand, within SM_b20241 at 246.274 kb on - strand, within SM_b20241 at 246.274 kb on - strand, within SM_b20241 at 246.345 kb on + strand, within SM_b20241 at 246.346 kb on - strand, within SM_b20241 at 246.399 kb on + strand at 246.400 kb on - strand at 246.460 kb on + strand at 246.461 kb on - strand at 246.510 kb on - strand at 246.792 kb on - strand, within SM_b20242 at 246.873 kb on - strand, within SM_b20242 at 247.074 kb on + strand, within SM_b20242 at 247.095 kb on + strand, within SM_b20242 at 247.095 kb on + strand, within SM_b20242 at 247.096 kb on - strand, within SM_b20242 at 247.127 kb on + strand, within SM_b20242 at 247.128 kb on - strand, within SM_b20242 at 247.128 kb on - strand, within SM_b20242 at 247.170 kb on - strand, within SM_b20242 at 247.367 kb on + strand, within SM_b20242 at 247.367 kb on + strand, within SM_b20242 at 247.368 kb on - strand, within SM_b20242 at 247.432 kb on + strand, within SM_b20242
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 244,384 + SM_b20240 0.11 +0.1 244,873 + SM_b20240 0.55 +0.0 245,039 - SM_b20240 0.70 -0.8 245,104 + SM_b20240 0.75 -0.3 245,104 + SM_b20240 0.75 +0.8 245,105 - SM_b20240 0.76 -0.5 245,105 - SM_b20240 0.76 +1.5 245,179 + SM_b20240 0.82 +0.6 245,180 - SM_b20240 0.82 -0.3 245,442 + -0.2 245,442 + +1.8 245,443 - +0.8 245,443 - +0.4 245,443 - +1.8 245,443 - -0.9 245,443 - -0.2 245,443 - -2.4 245,446 + -1.5 245,447 - -1.7 245,447 - -0.4 245,447 - +0.2 245,447 - +0.0 245,599 - +4.6 245,754 + SM_b20241 0.35 +0.7 245,755 - SM_b20241 0.35 -0.4 245,961 + SM_b20241 0.54 -2.1 245,961 + SM_b20241 0.54 +0.1 245,961 + SM_b20241 0.54 -0.8 245,962 - SM_b20241 0.54 +0.8 245,997 + SM_b20241 0.57 -1.0 246,274 - SM_b20241 0.83 -0.4 246,274 - SM_b20241 0.83 +0.1 246,345 + SM_b20241 0.89 -1.9 246,346 - SM_b20241 0.89 +0.5 246,399 + +0.1 246,400 - -1.1 246,460 + -0.3 246,461 - -0.1 246,510 - -0.2 246,792 - SM_b20242 0.30 +0.2 246,873 - SM_b20242 0.37 +1.3 247,074 + SM_b20242 0.55 +0.7 247,095 + SM_b20242 0.56 -0.0 247,095 + SM_b20242 0.56 +1.3 247,096 - SM_b20242 0.56 +0.4 247,127 + SM_b20242 0.59 +0.9 247,128 - SM_b20242 0.59 -3.0 247,128 - SM_b20242 0.59 -0.5 247,170 - SM_b20242 0.63 -2.6 247,367 + SM_b20242 0.80 +1.2 247,367 + SM_b20242 0.80 -0.2 247,368 - SM_b20242 0.81 +2.8 247,432 + SM_b20242 0.86 -0.1
Or see this region's nucleotide sequence