Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20154 and SM_b20155 are separated by 510 nucleotides SM_b20155 and SM_b20156 overlap by 1 nucleotides
SM_b20154: SM_b20154 - transcriptional regulator, at 170,752 to 171,738
_b20154
SM_b20155: SM_b20155 - ABC transporter permease, at 172,249 to 174,099
_b20155
SM_b20156: SM_b20156 - ABC transporter ATP-binding protein, at 174,099 to 175,232
_b20156
Position (kb) 172
173
174
175 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 171.270 kb on + strand, within SM_b20154 at 171.416 kb on - strand, within SM_b20154 at 171.416 kb on - strand, within SM_b20154 at 171.616 kb on + strand, within SM_b20154 at 171.616 kb on + strand, within SM_b20154 at 171.616 kb on + strand, within SM_b20154 at 171.617 kb on - strand, within SM_b20154 at 171.770 kb on - strand at 172.004 kb on + strand at 172.005 kb on - strand at 172.163 kb on + strand at 172.163 kb on + strand at 172.163 kb on + strand at 172.164 kb on - strand at 172.223 kb on - strand at 172.223 kb on - strand at 172.223 kb on - strand at 172.223 kb on - strand at 172.229 kb on - strand at 172.229 kb on - strand at 172.248 kb on - strand at 172.399 kb on + strand at 172.400 kb on - strand at 172.504 kb on + strand, within SM_b20155 at 172.634 kb on + strand, within SM_b20155 at 172.635 kb on - strand, within SM_b20155 at 172.691 kb on - strand, within SM_b20155 at 172.691 kb on - strand, within SM_b20155 at 172.747 kb on - strand, within SM_b20155 at 173.044 kb on + strand, within SM_b20155 at 173.044 kb on + strand, within SM_b20155 at 173.044 kb on + strand, within SM_b20155 at 173.045 kb on - strand, within SM_b20155 at 173.045 kb on - strand, within SM_b20155 at 173.157 kb on - strand, within SM_b20155 at 173.395 kb on + strand, within SM_b20155 at 173.507 kb on + strand, within SM_b20155 at 173.539 kb on + strand, within SM_b20155 at 173.605 kb on + strand, within SM_b20155 at 173.606 kb on - strand, within SM_b20155 at 173.639 kb on - strand, within SM_b20155 at 173.639 kb on - strand, within SM_b20155 at 173.639 kb on - strand, within SM_b20155 at 173.684 kb on - strand, within SM_b20155 at 173.915 kb on + strand at 173.915 kb on + strand at 173.915 kb on + strand at 173.959 kb on + strand at 173.960 kb on - strand at 173.980 kb on + strand at 173.981 kb on - strand at 174.035 kb on - strand at 174.136 kb on - strand at 174.136 kb on - strand at 174.136 kb on - strand at 174.372 kb on + strand, within SM_b20156 at 174.372 kb on + strand, within SM_b20156 at 174.373 kb on - strand, within SM_b20156 at 174.373 kb on - strand, within SM_b20156 at 174.373 kb on - strand, within SM_b20156 at 174.373 kb on - strand, within SM_b20156 at 174.373 kb on - strand, within SM_b20156 at 174.658 kb on + strand, within SM_b20156 at 174.659 kb on - strand, within SM_b20156 at 174.662 kb on + strand, within SM_b20156 at 174.662 kb on + strand, within SM_b20156 at 174.663 kb on - strand, within SM_b20156 at 174.663 kb on - strand, within SM_b20156 at 174.666 kb on + strand, within SM_b20156 at 174.786 kb on + strand, within SM_b20156 at 174.786 kb on + strand, within SM_b20156 at 174.787 kb on - strand, within SM_b20156 at 174.787 kb on - strand, within SM_b20156 at 174.787 kb on - strand, within SM_b20156 at 174.844 kb on + strand at 174.844 kb on + strand, within SM_b20156 at 174.844 kb on + strand, within SM_b20156 at 174.845 kb on - strand, within SM_b20156 at 174.845 kb on - strand, within SM_b20156 at 174.845 kb on - strand, within SM_b20156 at 174.845 kb on - strand, within SM_b20156 at 174.898 kb on - strand, within SM_b20156 at 174.966 kb on + strand, within SM_b20156
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 171,270 + SM_b20154 0.52 +1.5 171,416 - SM_b20154 0.67 +0.1 171,416 - SM_b20154 0.67 +0.0 171,616 + SM_b20154 0.88 +0.6 171,616 + SM_b20154 0.88 -0.6 171,616 + SM_b20154 0.88 -0.2 171,617 - SM_b20154 0.88 +1.5 171,770 - -0.1 172,004 + +0.2 172,005 - -2.5 172,163 + +0.1 172,163 + -0.2 172,163 + +1.5 172,164 - +1.2 172,223 - +0.9 172,223 - +0.2 172,223 - +0.4 172,223 - +0.4 172,229 - +2.3 172,229 - -0.6 172,248 - +0.4 172,399 + +0.6 172,400 - -0.0 172,504 + SM_b20155 0.14 -1.0 172,634 + SM_b20155 0.21 -1.4 172,635 - SM_b20155 0.21 +0.5 172,691 - SM_b20155 0.24 -0.2 172,691 - SM_b20155 0.24 -0.4 172,747 - SM_b20155 0.27 +1.3 173,044 + SM_b20155 0.43 -1.9 173,044 + SM_b20155 0.43 -1.7 173,044 + SM_b20155 0.43 +0.2 173,045 - SM_b20155 0.43 -0.6 173,045 - SM_b20155 0.43 -0.9 173,157 - SM_b20155 0.49 -0.4 173,395 + SM_b20155 0.62 -3.6 173,507 + SM_b20155 0.68 -0.4 173,539 + SM_b20155 0.70 +0.7 173,605 + SM_b20155 0.73 +0.8 173,606 - SM_b20155 0.73 -0.6 173,639 - SM_b20155 0.75 -1.8 173,639 - SM_b20155 0.75 -0.9 173,639 - SM_b20155 0.75 -0.2 173,684 - SM_b20155 0.78 +0.1 173,915 + +1.0 173,915 + -3.7 173,915 + -0.2 173,959 + -0.8 173,960 - -0.2 173,980 + -1.2 173,981 - -0.5 174,035 - -1.0 174,136 - +0.2 174,136 - -1.1 174,136 - +0.3 174,372 + SM_b20156 0.24 -0.0 174,372 + SM_b20156 0.24 +1.6 174,373 - SM_b20156 0.24 -1.0 174,373 - SM_b20156 0.24 -0.1 174,373 - SM_b20156 0.24 -1.8 174,373 - SM_b20156 0.24 +1.1 174,373 - SM_b20156 0.24 +0.2 174,658 + SM_b20156 0.49 +1.9 174,659 - SM_b20156 0.49 -1.5 174,662 + SM_b20156 0.50 +0.3 174,662 + SM_b20156 0.50 -0.6 174,663 - SM_b20156 0.50 +0.0 174,663 - SM_b20156 0.50 -1.0 174,666 + SM_b20156 0.50 +0.9 174,786 + SM_b20156 0.61 +2.8 174,786 + SM_b20156 0.61 -0.5 174,787 - SM_b20156 0.61 +0.3 174,787 - SM_b20156 0.61 -0.6 174,787 - SM_b20156 0.61 +0.2 174,844 + -0.2 174,844 + SM_b20156 0.66 +0.1 174,844 + SM_b20156 0.66 +0.4 174,845 - SM_b20156 0.66 -0.4 174,845 - SM_b20156 0.66 -0.0 174,845 - SM_b20156 0.66 -0.0 174,845 - SM_b20156 0.66 -0.2 174,898 - SM_b20156 0.70 +0.0 174,966 + SM_b20156 0.76 +0.2
Or see this region's nucleotide sequence