Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20078

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20077 and SM_b20078 overlap by 1 nucleotidesSM_b20078 and SM_b20079 are separated by 832 nucleotides SM_b20077: SM_b20077 - sensor histidine kinase, at 85,081 to 86,745 _b20077 SM_b20078: SM_b20078 - response regulator, at 86,745 to 87,380 _b20078 SM_b20079: SM_b20079 - hemolysin-adenlyate cyclase, at 88,213 to 91,431 _b20079 Position (kb) 86 87 88Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 85.826 kb on - strand, within SM_b20077at 86.136 kb on + strand, within SM_b20077at 86.445 kb on + strand, within SM_b20077at 86.445 kb on + strand, within SM_b20077at 86.446 kb on - strand, within SM_b20077at 86.446 kb on - strand, within SM_b20077at 86.446 kb on - strand, within SM_b20077at 86.446 kb on - strand, within SM_b20077at 86.446 kb on - strand, within SM_b20077at 86.477 kb on - strand, within SM_b20077at 86.484 kb on - strand, within SM_b20077at 86.540 kb on + strand, within SM_b20077at 86.872 kb on + strand, within SM_b20078at 86.872 kb on + strand, within SM_b20078at 87.060 kb on + strand, within SM_b20078at 87.060 kb on + strand, within SM_b20078at 87.060 kb on + strand, within SM_b20078at 87.061 kb on - strand, within SM_b20078at 87.188 kb on + strand, within SM_b20078at 87.275 kb on + strand, within SM_b20078at 87.276 kb on - strand, within SM_b20078at 87.357 kb on + strandat 87.437 kb on + strandat 87.542 kb on - strandat 87.542 kb on - strandat 87.553 kb on + strandat 87.612 kb on + strandat 87.618 kb on + strandat 87.618 kb on + strandat 87.618 kb on + strandat 87.619 kb on - strandat 87.619 kb on - strandat 87.625 kb on - strandat 87.625 kb on - strandat 87.625 kb on - strandat 87.642 kb on + strandat 87.748 kb on - strandat 87.750 kb on - strandat 87.759 kb on + strandat 87.759 kb on + strandat 87.759 kb on + strandat 87.759 kb on + strandat 87.759 kb on + strandat 87.761 kb on + strandat 87.762 kb on - strandat 87.762 kb on - strandat 87.762 kb on - strandat 87.927 kb on + strandat 88.010 kb on + strandat 88.010 kb on + strandat 88.011 kb on - strandat 88.011 kb on - strandat 88.012 kb on + strandat 88.049 kb on + strandat 88.049 kb on + strandat 88.049 kb on + strandat 88.049 kb on + strandat 88.050 kb on - strandat 88.140 kb on - strandat 88.199 kb on - strandat 88.254 kb on - strandat 88.254 kb on - strandat 88.265 kb on + strandat 88.364 kb on - strandat 88.364 kb on - strandat 88.364 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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85,826 - SM_b20077 0.45 -0.8
86,136 + SM_b20077 0.63 +0.3
86,445 + SM_b20077 0.82 +0.2
86,445 + SM_b20077 0.82 -0.5
86,446 - SM_b20077 0.82 +3.3
86,446 - SM_b20077 0.82 -1.7
86,446 - SM_b20077 0.82 +0.2
86,446 - SM_b20077 0.82 -1.0
86,446 - SM_b20077 0.82 +0.3
86,477 - SM_b20077 0.84 +0.2
86,484 - SM_b20077 0.84 -0.2
86,540 + SM_b20077 0.88 -1.4
86,872 + SM_b20078 0.20 +1.8
86,872 + SM_b20078 0.20 +0.8
87,060 + SM_b20078 0.50 +0.0
87,060 + SM_b20078 0.50 +0.5
87,060 + SM_b20078 0.50 +0.1
87,061 - SM_b20078 0.50 +0.9
87,188 + SM_b20078 0.70 -1.0
87,275 + SM_b20078 0.83 -0.6
87,276 - SM_b20078 0.83 +3.0
87,357 + +0.3
87,437 + -2.0
87,542 - -0.6
87,542 - +1.8
87,553 + +0.3
87,612 + +4.1
87,618 + +0.1
87,618 + +1.4
87,618 + -0.2
87,619 - +1.5
87,619 - +1.9
87,625 - -0.2
87,625 - -2.8
87,625 - +1.4
87,642 + -0.2
87,748 - +0.3
87,750 - -1.7
87,759 + -1.4
87,759 + -0.9
87,759 + -0.3
87,759 + -0.6
87,759 + +0.3
87,761 + -1.2
87,762 - +0.2
87,762 - +0.3
87,762 - -1.2
87,927 + +1.2
88,010 + +0.8
88,010 + +0.5
88,011 - +0.0
88,011 - +1.0
88,012 + +0.0
88,049 + -0.4
88,049 + -0.4
88,049 + -1.6
88,049 + -0.3
88,050 - -0.9
88,140 - +0.1
88,199 - -0.7
88,254 - -1.2
88,254 - +1.1
88,265 + +0.6
88,364 - -1.1
88,364 - +0.6
88,364 - +0.8

Or see this region's nucleotide sequence