Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4985

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
5,909,800	+		Psyr_4983	0.81	+0.1
5,909,800	+		Psyr_4983	0.81	-2.7
5,909,801	-		Psyr_4983	0.81	+0.4
5,909,938	+		Psyr_4983	0.89	-0.7
5,909,938	+		Psyr_4983	0.89	-0.5
5,909,938	+		Psyr_4983	0.89	-0.5
5,909,939	-		Psyr_4983	0.89	-0.6
5,909,939	-		Psyr_4983	0.89	+1.2
5,909,939	-		Psyr_4983	0.89	+0.9
5,909,968	+				-2.0
5,909,968	+				+0.8
5,909,968	+				-1.8
5,909,969	-				-0.2
5,910,014	+				+0.2
5,910,014	+				-2.0
5,910,014	+				+0.9
5,910,014	+				+1.4
5,910,014	+				-0.0
5,910,014	+				+0.0
5,910,014	+				+0.3
5,910,014	+				-0.6
5,910,014	+				+1.2
5,910,014	+				+0.3
5,910,015	-				+0.3
5,910,015	-				-0.9
5,910,015	-				+1.3
5,910,015	-				+0.4
5,910,015	-				-0.5
5,910,015	-				+0.4
5,910,015	-				+0.5
5,910,015	-				-1.0
5,910,015	-				+2.3
5,910,015	-				-2.8
5,910,015	-				+1.5
5,910,015	-				-1.1
5,910,015	-				+0.1
5,910,015	-				+0.0
5,910,072	+				+0.4
5,910,072	+				+0.0
5,910,175	+				+0.3
5,910,183	+				+1.6
5,910,183	+				-0.6
5,910,183	+				+0.9
5,910,184	-				-0.7
5,910,184	-				+0.7
5,910,199	-				+0.9
5,910,199	-				-0.2
5,910,199	-				-1.1
5,910,382	+		Psyr_4984	0.39	+1.0
5,910,382	+		Psyr_4984	0.39	+0.2
5,910,382	+		Psyr_4984	0.39	-1.5
5,910,382	+		Psyr_4984	0.39	+2.8
5,910,425	+		Psyr_4984	0.46	-0.6
5,910,425	+		Psyr_4984	0.46	-0.6
5,910,425	+		Psyr_4984	0.46	+2.0
5,910,425	+		Psyr_4984	0.46	-1.3
5,910,425	+		Psyr_4984	0.46	+1.7
5,910,425	+		Psyr_4984	0.46	+0.9
5,910,425	+		Psyr_4984	0.46	-0.3
5,910,425	+		Psyr_4984	0.46	-1.8
5,910,425	+		Psyr_4984	0.46	-0.9
5,910,425	+		Psyr_4984	0.46	-0.6
5,910,425	+		Psyr_4984	0.46	+2.3
5,910,425	+		Psyr_4984	0.46	-0.0
5,910,425	+		Psyr_4984	0.46	+1.7
5,910,426	-		Psyr_4984	0.46	+0.2
5,910,426	-		Psyr_4984	0.46	-1.8
5,910,426	-		Psyr_4984	0.46	+2.0
5,910,426	-		Psyr_4984	0.46	+1.7
5,910,426	-		Psyr_4984	0.46	-0.6
5,910,426	-		Psyr_4984	0.46	+0.5
5,910,426	-		Psyr_4984	0.46	-0.9
5,910,426	-		Psyr_4984	0.46	-2.6
5,910,426	-		Psyr_4984	0.46	+0.5
5,910,426	-		Psyr_4984	0.46	+0.2
5,910,426	-		Psyr_4984	0.46	+0.8
5,910,501	+		Psyr_4984	0.59	-0.9
5,910,502	-		Psyr_4984	0.59	-0.2
5,910,537	+		Psyr_4984	0.65	+0.1
5,910,600	-		Psyr_4984	0.76	-0.2
5,910,600	-		Psyr_4984	0.76	+0.2
5,910,600	-		Psyr_4984	0.76	+0.8
5,910,767	+				-0.1
5,910,767	+				+0.3
5,910,768	-				-0.7
5,910,768	-				+1.6
5,910,780	-				+0.4
5,910,799	+				-1.1
5,910,800	-				+0.2
5,910,880	+		Psyr_4985	0.23	-0.1
5,910,880	+		Psyr_4985	0.23	+0.8
5,910,880	+		Psyr_4985	0.23	-0.0
5,910,880	+		Psyr_4985	0.23	+1.0
5,910,880	+		Psyr_4985	0.23	+1.1
5,910,880	+		Psyr_4985	0.23	-0.6
5,910,880	+		Psyr_4985	0.23	-0.1
5,910,880	+		Psyr_4985	0.23	+0.2
5,910,880	+		Psyr_4985	0.23	+0.2
5,910,881	-		Psyr_4985	0.23	+0.1
5,910,881	-		Psyr_4985	0.23	+0.1
5,910,881	-		Psyr_4985	0.23	+1.3
5,910,903	+		Psyr_4985	0.28	+1.2
5,910,904	-		Psyr_4985	0.28	+1.6
5,910,926	+		Psyr_4985	0.33	-1.5
5,910,926	+		Psyr_4985	0.33	+0.9
5,910,926	+		Psyr_4985	0.33	-0.2
5,910,926	+		Psyr_4985	0.33	-0.6
5,910,926	+		Psyr_4985	0.33	+2.1
5,910,927	-		Psyr_4985	0.33	-0.2
5,910,927	-		Psyr_4985	0.33	+0.5
5,910,927	-		Psyr_4985	0.33	+0.4
5,910,927	-		Psyr_4985	0.33	-0.3
5,910,927	-		Psyr_4985	0.33	+0.5
5,910,927	-		Psyr_4985	0.33	-0.1
5,910,927	-		Psyr_4985	0.33	-1.2
5,910,927	-		Psyr_4985	0.33	+0.4
5,910,927	-		Psyr_4985	0.33	+1.4
5,911,043	+		Psyr_4985	0.58	+0.5
5,911,043	+		Psyr_4985	0.58	-2.3
5,911,043	+		Psyr_4985	0.58	+0.8
5,911,043	+		Psyr_4985	0.58	+0.8
5,911,044	-		Psyr_4985	0.58	-0.3
5,911,044	-		Psyr_4985	0.58	+1.0
5,911,044	-		Psyr_4985	0.58	+1.1
5,911,044	-		Psyr_4985	0.58	+0.1
5,911,046	+		Psyr_4985	0.58	-3.1
5,911,046	+		Psyr_4985	0.58	+1.3
5,911,046	+		Psyr_4985	0.58	-1.7
5,911,046	+		Psyr_4985	0.58	+1.3
5,911,046	+		Psyr_4985	0.58	+0.6
5,911,046	+		Psyr_4985	0.58	+0.2
5,911,046	+		Psyr_4985	0.58	-0.5
5,911,046	+		Psyr_4985	0.58	+2.7
5,911,046	+		Psyr_4985	0.58	+0.5
5,911,046	+		Psyr_4985	0.58	+0.1
5,911,046	+		Psyr_4985	0.58	+2.6
5,911,046	+		Psyr_4985	0.58	+0.4
5,911,046	+		Psyr_4985	0.58	+1.8
5,911,046	+		Psyr_4985	0.58	+0.1
5,911,046	+		Psyr_4985	0.58	-1.7
5,911,046	+		Psyr_4985	0.58	+0.5
5,911,047	-		Psyr_4985	0.59	+1.1
5,911,047	-		Psyr_4985	0.59	-2.6
5,911,047	-		Psyr_4985	0.59	-1.3
5,911,047	-		Psyr_4985	0.59	+0.4
5,911,047	-		Psyr_4985	0.59	-0.6
5,911,047	-		Psyr_4985	0.59	+1.2
5,911,047	-		Psyr_4985	0.59	+0.8
5,911,047	-		Psyr_4985	0.59	-0.2
5,911,047	-		Psyr_4985	0.59	-0.4
5,911,047	-		Psyr_4985	0.59	+0.1
5,911,047	-		Psyr_4985	0.59	-0.2
5,911,047	-		Psyr_4985	0.59	-1.6
5,911,047	-		Psyr_4985	0.59	+1.1
5,911,047	-		Psyr_4985	0.59	+0.9
5,911,047	-		Psyr_4985	0.59	-2.1
5,911,067	+		Psyr_4985	0.63	+1.0
5,911,067	+		Psyr_4985	0.63	-1.2
5,911,068	-		Psyr_4985	0.63	-0.2
5,911,068	-		Psyr_4985	0.63	+1.1
5,911,068	-		Psyr_4985	0.63	-0.3
5,911,068	-		Psyr_4985	0.63	+1.7
5,911,070	+		Psyr_4985	0.63	+1.9
5,911,070	+		Psyr_4985	0.63	+0.1
5,911,070	+		Psyr_4985	0.63	-2.7
5,911,070	+		Psyr_4985	0.63	+0.0
5,911,071	-		Psyr_4985	0.64	-0.5
5,911,071	-		Psyr_4985	0.64	-1.8
5,911,071	-		Psyr_4985	0.64	-0.5
5,911,071	-		Psyr_4985	0.64	-0.5
5,911,117	-		Psyr_4985	0.74	-0.3
5,911,277	+				-1.1
5,911,277	+				-0.7
5,911,278	-				-0.8
5,911,278	-				-0.4
5,911,278	-				+2.1
5,911,417	-				+0.6
5,911,417	-				-0.4
5,911,417	-				-0.2
5,911,452	+				+0.2
5,911,452	+				-1.1
5,911,452	+				-1.6
5,911,452	+				+0.1
5,911,452	+				+0.1
5,911,452	+				+0.5
5,911,452	+				+0.6
5,911,452	+				-1.1
5,911,452	+				+0.1
5,911,453	-				-2.0
5,911,453	-				+0.8
5,911,453	-				-0.2
5,911,453	-				+0.4
5,911,453	-				-1.1
5,911,501	+				+0.6
5,911,501	+				-0.3
5,911,501	+				-0.5
5,911,501	+				+3.3
5,911,501	+				-0.3
5,911,501	+				+0.8
5,911,501	+				-0.0
5,911,501	+				-0.3
5,911,501	+				-0.7
5,911,501	+				+3.0
5,911,501	+				-0.2
5,911,502	-				+0.7
5,911,502	-				-2.3
5,911,502	-				-1.5
5,911,502	-				+2.0
5,911,502	-				-0.6
5,911,502	-				+0.2
5,911,502	-				-1.6
5,911,502	-				+1.4
5,911,502	-				-0.5
5,911,502	-				-0.3
5,911,502	-				-0.5
5,911,502	-				+0.3
5,911,502	-				+0.7
5,911,502	-				-0.1
5,911,502	-				+0.8
5,911,502	-				+1.6
5,911,502	-				-0.2
5,911,502	-				+0.3
5,911,502	-				+1.1
5,911,679	+		Psyr_4986	0.10	-0.6
5,911,679	+		Psyr_4986	0.10	-0.8
5,911,679	+		Psyr_4986	0.10	-0.9
5,911,679	+		Psyr_4986	0.10	-1.0
5,911,679	+		Psyr_4986	0.10	-2.4
5,911,679	+		Psyr_4986	0.10	+1.1
5,911,679	+		Psyr_4986	0.10	-0.1
5,911,679	+		Psyr_4986	0.10	+1.2
5,911,679	+		Psyr_4986	0.10	-0.1
5,911,680	-		Psyr_4986	0.10	+0.1
5,911,680	-		Psyr_4986	0.10	-2.4
5,911,680	-		Psyr_4986	0.10	+0.7
5,911,680	-		Psyr_4986	0.10	-0.7
5,911,680	-		Psyr_4986	0.10	+0.7
5,911,680	-		Psyr_4986	0.10	-1.2
5,911,680	-		Psyr_4986	0.10	-1.3
5,911,680	-		Psyr_4986	0.10	-1.3
5,911,705	+		Psyr_4986	0.11	-0.1
5,911,705	+		Psyr_4986	0.11	-1.8
5,911,747	-		Psyr_4986	0.12	-1.6
5,911,911	-		Psyr_4986	0.16	-0.8
5,911,911	-		Psyr_4986	0.16	+0.9
5,911,911	-				-1.1
5,912,035	+		Psyr_4986	0.19	-0.3
5,912,063	+		Psyr_4986	0.19	+1.1
5,912,125	+		Psyr_4986	0.21	-0.3
5,912,125	+		Psyr_4986	0.21	-0.3
5,912,130	+		Psyr_4986	0.21	+0.7
5,912,131	-		Psyr_4986	0.21	+0.1
5,912,168	+		Psyr_4986	0.22	+0.1
5,912,168	+		Psyr_4986	0.22	+1.5
5,912,169	-		Psyr_4986	0.22	-0.3
5,912,169	-		Psyr_4986	0.22	+0.2
5,912,188	+		Psyr_4986	0.22	+0.1
5,912,188	+		Psyr_4986	0.22	+1.3
5,912,188	+		Psyr_4986	0.22	+1.6
5,912,188	+		Psyr_4986	0.22	-0.2
5,912,188	+		Psyr_4986	0.22	-1.2
5,912,188	+		Psyr_4986	0.22	+1.4
5,912,189	-		Psyr_4986	0.22	+0.2
5,912,189	-		Psyr_4986	0.22	-0.0
5,912,189	-		Psyr_4986	0.22	-0.4
5,912,189	-		Psyr_4986	0.22	+0.8
5,912,189	-		Psyr_4986	0.22	-0.7
5,912,189	-		Psyr_4986	0.22	-1.5
5,912,189	-		Psyr_4986	0.22	+0.5
5,912,189	-		Psyr_4986	0.22	-0.4
5,912,189	-		Psyr_4986	0.22	-1.4
5,912,209	+		Psyr_4986	0.23	+0.5
5,912,209	+		Psyr_4986	0.23	-0.7
5,912,210	-		Psyr_4986	0.23	+0.7
5,912,236	+		Psyr_4986	0.23	+0.9
5,912,237	-		Psyr_4986	0.23	+0.3