Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4891

Experiment: epiphytic; Green bean

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_4890 and Psyr_4891 are separated by 4 nucleotidesPsyr_4891 and Psyr_4892 are separated by 216 nucleotides Psyr_4890: Psyr_4890 - Peptidase S1, chymotrypsin, at 5,801,748 to 5,803,250 _4890 Psyr_4891: Psyr_4891 - amino acid ABC transporter substrate-binding protein, PAAT family, at 5,803,255 to 5,804,010 _4891 Psyr_4892: Psyr_4892 - trypsin domain protein, at 5,804,227 to 5,805,762 _4892 Position (kb) 5803 5804 5805Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5802.363 kb on - strand, within Psyr_4890at 5802.371 kb on + strand, within Psyr_4890at 5802.441 kb on + strand, within Psyr_4890at 5802.442 kb on - strand, within Psyr_4890at 5802.442 kb on - strand, within Psyr_4890at 5802.539 kb on + strand, within Psyr_4890at 5802.539 kb on + strand, within Psyr_4890at 5802.539 kb on + strand, within Psyr_4890at 5802.540 kb on - strand, within Psyr_4890at 5802.540 kb on - strand, within Psyr_4890at 5802.540 kb on - strand, within Psyr_4890at 5802.540 kb on - strand, within Psyr_4890at 5802.543 kb on + strand, within Psyr_4890at 5802.543 kb on + strand, within Psyr_4890at 5802.543 kb on + strand, within Psyr_4890at 5802.544 kb on - strand, within Psyr_4890at 5802.596 kb on + strand, within Psyr_4890at 5802.682 kb on + strand, within Psyr_4890at 5802.682 kb on + strand, within Psyr_4890at 5802.682 kb on + strand, within Psyr_4890at 5802.683 kb on - strand, within Psyr_4890at 5802.683 kb on - strand, within Psyr_4890at 5802.683 kb on - strand, within Psyr_4890at 5802.683 kb on - strand, within Psyr_4890at 5802.711 kb on + strand, within Psyr_4890at 5802.753 kb on + strand, within Psyr_4890at 5802.753 kb on + strand, within Psyr_4890at 5802.753 kb on + strand, within Psyr_4890at 5802.759 kb on + strand, within Psyr_4890at 5802.813 kb on - strand, within Psyr_4890at 5802.886 kb on + strand, within Psyr_4890at 5802.886 kb on + strand, within Psyr_4890at 5802.886 kb on + strand, within Psyr_4890at 5802.886 kb on + strand, within Psyr_4890at 5802.886 kb on + strand, within Psyr_4890at 5802.886 kb on + strand, within Psyr_4890at 5802.886 kb on + strand, within Psyr_4890at 5802.886 kb on + strand, within Psyr_4890at 5802.886 kb on + strand, within Psyr_4890at 5802.887 kb on - strand, within Psyr_4890at 5802.887 kb on - strand, within Psyr_4890at 5802.887 kb on - strand, within Psyr_4890at 5802.887 kb on - strand, within Psyr_4890at 5802.887 kb on - strand, within Psyr_4890at 5802.887 kb on - strand, within Psyr_4890at 5802.952 kb on + strand, within Psyr_4890at 5802.953 kb on - strand, within Psyr_4890at 5802.953 kb on - strand, within Psyr_4890at 5803.059 kb on + strand, within Psyr_4890at 5803.060 kb on - strand, within Psyr_4890at 5803.060 kb on - strand, within Psyr_4890at 5803.062 kb on + strand, within Psyr_4890at 5803.062 kb on + strand, within Psyr_4890at 5803.062 kb on + strand, within Psyr_4890at 5803.062 kb on + strand, within Psyr_4890at 5803.062 kb on + strand, within Psyr_4890at 5803.062 kb on + strand, within Psyr_4890at 5803.062 kb on + strand, within Psyr_4890at 5803.062 kb on + strand, within Psyr_4890at 5803.062 kb on + strand, within Psyr_4890at 5803.062 kb on + strand, within Psyr_4890at 5803.062 kb on + strand, within Psyr_4890at 5803.062 kb on + strand, within Psyr_4890at 5803.063 kb on - strand, within Psyr_4890at 5803.063 kb on - strand, within Psyr_4890at 5803.063 kb on - strand, within Psyr_4890at 5803.063 kb on - strand, within Psyr_4890at 5803.063 kb on - strand, within Psyr_4890at 5803.063 kb on - strand, within Psyr_4890at 5803.063 kb on - strand, within Psyr_4890at 5803.145 kb on - strandat 5803.180 kb on - strandat 5803.180 kb on - strandat 5803.263 kb on - strandat 5803.368 kb on - strand, within Psyr_4891at 5803.542 kb on + strand, within Psyr_4891at 5803.542 kb on + strand, within Psyr_4891at 5803.571 kb on + strand, within Psyr_4891at 5803.571 kb on + strand, within Psyr_4891at 5803.571 kb on + strand, within Psyr_4891at 5803.572 kb on - strand, within Psyr_4891at 5803.572 kb on - strand, within Psyr_4891at 5803.572 kb on - strand, within Psyr_4891at 5803.572 kb on - strand, within Psyr_4891at 5803.572 kb on - strand, within Psyr_4891at 5803.655 kb on + strand, within Psyr_4891at 5803.655 kb on + strand, within Psyr_4891at 5803.656 kb on - strand, within Psyr_4891at 5803.663 kb on + strand, within Psyr_4891at 5803.754 kb on + strand, within Psyr_4891at 5803.791 kb on - strand, within Psyr_4891at 5803.928 kb on + strand, within Psyr_4891at 5803.928 kb on + strand, within Psyr_4891at 5803.929 kb on - strand, within Psyr_4891at 5803.996 kb on + strandat 5804.070 kb on - strandat 5804.109 kb on + strandat 5804.151 kb on + strandat 5804.152 kb on - strandat 5804.155 kb on + strandat 5804.155 kb on + strandat 5804.155 kb on + strandat 5804.155 kb on + strandat 5804.155 kb on + strandat 5804.155 kb on + strandat 5804.155 kb on + strandat 5804.155 kb on + strandat 5804.155 kb on + strandat 5804.155 kb on + strandat 5804.155 kb on + strandat 5804.155 kb on + strandat 5804.156 kb on - strandat 5804.156 kb on - strandat 5804.156 kb on - strandat 5804.156 kb on - strandat 5804.156 kb on - strandat 5804.156 kb on - strandat 5804.156 kb on - strandat 5804.156 kb on - strandat 5804.156 kb on - strandat 5804.159 kb on + strandat 5804.159 kb on + strandat 5804.159 kb on + strandat 5804.160 kb on - strandat 5804.160 kb on - strandat 5804.160 kb on - strandat 5804.160 kb on - strandat 5804.212 kb on + strandat 5804.212 kb on + strandat 5804.213 kb on - strandat 5804.213 kb on - strandat 5804.213 kb on - strandat 5804.213 kb on - strandat 5804.213 kb on - strandat 5804.213 kb on - strandat 5804.213 kb on - strandat 5804.213 kb on - strandat 5804.259 kb on - strandat 5804.259 kb on - strandat 5804.471 kb on + strand, within Psyr_4892at 5804.472 kb on - strand, within Psyr_4892at 5804.472 kb on - strand, within Psyr_4892at 5804.479 kb on + strand, within Psyr_4892at 5804.479 kb on + strand, within Psyr_4892at 5804.479 kb on + strand, within Psyr_4892at 5804.479 kb on + strand, within Psyr_4892at 5804.480 kb on - strand, within Psyr_4892at 5804.480 kb on - strand, within Psyr_4892at 5804.480 kb on - strand, within Psyr_4892at 5804.483 kb on + strand, within Psyr_4892at 5804.483 kb on + strand, within Psyr_4892at 5804.483 kb on + strand, within Psyr_4892at 5804.483 kb on + strand, within Psyr_4892at 5804.484 kb on - strand, within Psyr_4892at 5804.506 kb on + strand, within Psyr_4892at 5804.506 kb on + strand, within Psyr_4892at 5804.506 kb on + strand, within Psyr_4892at 5804.506 kb on + strand, within Psyr_4892at 5804.506 kb on + strand, within Psyr_4892at 5804.506 kb on + strand, within Psyr_4892at 5804.506 kb on + strand, within Psyr_4892at 5804.506 kb on + strand, within Psyr_4892at 5804.506 kb on + strand, within Psyr_4892at 5804.507 kb on - strand, within Psyr_4892at 5804.507 kb on - strand, within Psyr_4892at 5804.507 kb on - strand, within Psyr_4892at 5804.543 kb on + strand, within Psyr_4892at 5804.543 kb on + strand, within Psyr_4892at 5804.543 kb on + strand, within Psyr_4892at 5804.544 kb on - strand, within Psyr_4892at 5804.544 kb on - strand, within Psyr_4892at 5804.544 kb on - strand, within Psyr_4892at 5804.566 kb on + strand, within Psyr_4892at 5804.599 kb on + strand, within Psyr_4892at 5804.599 kb on + strand, within Psyr_4892at 5804.599 kb on + strand, within Psyr_4892at 5804.599 kb on + strand, within Psyr_4892at 5804.600 kb on - strand, within Psyr_4892at 5804.600 kb on - strand, within Psyr_4892at 5804.600 kb on - strand, within Psyr_4892at 5804.600 kb on - strand, within Psyr_4892at 5804.600 kb on - strand, within Psyr_4892at 5804.600 kb on - strand, within Psyr_4892at 5804.600 kb on - strand, within Psyr_4892at 5804.600 kb on - strand, within Psyr_4892at 5804.698 kb on - strand, within Psyr_4892at 5804.698 kb on - strand, within Psyr_4892at 5804.781 kb on + strand, within Psyr_4892at 5804.782 kb on - strand, within Psyr_4892at 5804.782 kb on - strand, within Psyr_4892at 5804.782 kb on - strand, within Psyr_4892at 5804.782 kb on - strand, within Psyr_4892at 5804.782 kb on - strand, within Psyr_4892at 5804.782 kb on - strand, within Psyr_4892at 5804.820 kb on - strand, within Psyr_4892at 5804.909 kb on + strand, within Psyr_4892at 5804.910 kb on - strand, within Psyr_4892at 5804.917 kb on + strand, within Psyr_4892at 5804.919 kb on + strand, within Psyr_4892at 5804.920 kb on - strand, within Psyr_4892at 5804.920 kb on - strand, within Psyr_4892at 5804.920 kb on - strand, within Psyr_4892at 5804.920 kb on - strand, within Psyr_4892at 5804.920 kb on - strand, within Psyr_4892

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Green bean
remove
5,802,363 - Psyr_4890 0.41 -0.5
5,802,371 + Psyr_4890 0.41 -0.9
5,802,441 + Psyr_4890 0.46 -0.2
5,802,442 - Psyr_4890 0.46 -0.7
5,802,442 - Psyr_4890 0.46 +2.1
5,802,539 + Psyr_4890 0.53 +0.1
5,802,539 + Psyr_4890 0.53 +0.3
5,802,539 + Psyr_4890 0.53 +1.1
5,802,540 - Psyr_4890 0.53 +1.3
5,802,540 - Psyr_4890 0.53 -0.7
5,802,540 - Psyr_4890 0.53 +0.6
5,802,540 - Psyr_4890 0.53 +0.5
5,802,543 + Psyr_4890 0.53 +0.1
5,802,543 + Psyr_4890 0.53 +0.8
5,802,543 + Psyr_4890 0.53 +0.1
5,802,544 - Psyr_4890 0.53 -2.3
5,802,596 + Psyr_4890 0.56 +0.7
5,802,682 + Psyr_4890 0.62 +0.1
5,802,682 + Psyr_4890 0.62 -0.5
5,802,682 + Psyr_4890 0.62 +1.5
5,802,683 - Psyr_4890 0.62 +0.3
5,802,683 - Psyr_4890 0.62 +0.0
5,802,683 - Psyr_4890 0.62 +1.1
5,802,683 - Psyr_4890 0.62 -1.6
5,802,711 + Psyr_4890 0.64 -1.0
5,802,753 + Psyr_4890 0.67 +0.7
5,802,753 + Psyr_4890 0.67 +1.7
5,802,753 + Psyr_4890 0.67 +0.2
5,802,759 + Psyr_4890 0.67 -0.1
5,802,813 - Psyr_4890 0.71 -2.0
5,802,886 + Psyr_4890 0.76 +0.3
5,802,886 + Psyr_4890 0.76 +1.2
5,802,886 + Psyr_4890 0.76 +1.0
5,802,886 + Psyr_4890 0.76 -1.5
5,802,886 + Psyr_4890 0.76 -0.2
5,802,886 + Psyr_4890 0.76 -0.7
5,802,886 + Psyr_4890 0.76 +0.5
5,802,886 + Psyr_4890 0.76 +0.7
5,802,886 + Psyr_4890 0.76 -0.5
5,802,887 - Psyr_4890 0.76 +0.3
5,802,887 - Psyr_4890 0.76 +1.4
5,802,887 - Psyr_4890 0.76 +0.8
5,802,887 - Psyr_4890 0.76 +0.9
5,802,887 - Psyr_4890 0.76 -0.3
5,802,887 - Psyr_4890 0.76 +1.2
5,802,952 + Psyr_4890 0.80 +0.4
5,802,953 - Psyr_4890 0.80 +0.8
5,802,953 - Psyr_4890 0.80 -0.1
5,803,059 + Psyr_4890 0.87 +0.1
5,803,060 - Psyr_4890 0.87 +0.3
5,803,060 - Psyr_4890 0.87 -0.3
5,803,062 + Psyr_4890 0.87 +1.2
5,803,062 + Psyr_4890 0.87 -0.5
5,803,062 + Psyr_4890 0.87 -0.8
5,803,062 + Psyr_4890 0.87 -3.2
5,803,062 + Psyr_4890 0.87 +0.1
5,803,062 + Psyr_4890 0.87 +0.3
5,803,062 + Psyr_4890 0.87 +0.2
5,803,062 + Psyr_4890 0.87 +1.1
5,803,062 + Psyr_4890 0.87 +0.8
5,803,062 + Psyr_4890 0.87 -2.3
5,803,062 + Psyr_4890 0.87 +1.2
5,803,062 + Psyr_4890 0.87 +1.7
5,803,063 - Psyr_4890 0.87 -1.2
5,803,063 - Psyr_4890 0.87 +1.3
5,803,063 - Psyr_4890 0.87 -1.3
5,803,063 - Psyr_4890 0.87 +0.8
5,803,063 - Psyr_4890 0.87 -1.7
5,803,063 - Psyr_4890 0.87 +1.8
5,803,063 - Psyr_4890 0.87 -0.3
5,803,145 - +0.3
5,803,180 - -0.3
5,803,180 - -0.1
5,803,263 - -0.7
5,803,368 - Psyr_4891 0.15 -0.3
5,803,542 + Psyr_4891 0.38 -1.4
5,803,542 + Psyr_4891 0.38 +0.0
5,803,571 + Psyr_4891 0.42 -0.7
5,803,571 + Psyr_4891 0.42 -0.1
5,803,571 + Psyr_4891 0.42 -1.3
5,803,572 - Psyr_4891 0.42 +0.1
5,803,572 - Psyr_4891 0.42 +0.2
5,803,572 - Psyr_4891 0.42 -1.6
5,803,572 - Psyr_4891 0.42 -1.7
5,803,572 - Psyr_4891 0.42 -0.3
5,803,655 + Psyr_4891 0.53 -0.1
5,803,655 + Psyr_4891 0.53 +0.3
5,803,656 - Psyr_4891 0.53 -2.8
5,803,663 + Psyr_4891 0.54 +1.2
5,803,754 + Psyr_4891 0.66 -1.3
5,803,791 - Psyr_4891 0.71 -2.3
5,803,928 + Psyr_4891 0.89 +1.0
5,803,928 + Psyr_4891 0.89 +0.2
5,803,929 - Psyr_4891 0.89 -0.5
5,803,996 + -1.1
5,804,070 - -0.2
5,804,109 + -0.5
5,804,151 + -2.6
5,804,152 - +0.8
5,804,155 + -0.5
5,804,155 + -0.8
5,804,155 + -1.2
5,804,155 + -2.6
5,804,155 + -1.1
5,804,155 + +0.5
5,804,155 + -0.1
5,804,155 + -0.5
5,804,155 + -2.9
5,804,155 + +0.7
5,804,155 + -2.1
5,804,155 + -2.4
5,804,156 - -0.0
5,804,156 - +0.7
5,804,156 - +1.5
5,804,156 - +1.1
5,804,156 - -0.8
5,804,156 - +0.4
5,804,156 - -0.5
5,804,156 - -0.0
5,804,156 - -0.3
5,804,159 + -1.0
5,804,159 + +1.7
5,804,159 + -1.8
5,804,160 - -1.2
5,804,160 - -1.3
5,804,160 - -1.2
5,804,160 - -0.9
5,804,212 + +1.6
5,804,212 + -1.7
5,804,213 - -0.7
5,804,213 - +1.7
5,804,213 - +2.7
5,804,213 - +1.2
5,804,213 - -2.4
5,804,213 - +1.0
5,804,213 - +0.5
5,804,213 - +0.2
5,804,259 - -2.2
5,804,259 - +0.9
5,804,471 + Psyr_4892 0.16 -1.1
5,804,472 - Psyr_4892 0.16 -0.2
5,804,472 - Psyr_4892 0.16 +1.9
5,804,479 + Psyr_4892 0.16 -1.2
5,804,479 + Psyr_4892 0.16 +0.0
5,804,479 + Psyr_4892 0.16 -0.7
5,804,479 + Psyr_4892 0.16 +0.2
5,804,480 - Psyr_4892 0.16 -1.0
5,804,480 - Psyr_4892 0.16 -0.3
5,804,480 - Psyr_4892 0.16 -0.1
5,804,483 + Psyr_4892 0.17 +0.4
5,804,483 + Psyr_4892 0.17 -0.3
5,804,483 + Psyr_4892 0.17 -0.4
5,804,483 + Psyr_4892 0.17 +0.2
5,804,484 - Psyr_4892 0.17 +0.8
5,804,506 + Psyr_4892 0.18 +1.5
5,804,506 + Psyr_4892 0.18 +3.6
5,804,506 + Psyr_4892 0.18 -0.3
5,804,506 + Psyr_4892 0.18 +1.0
5,804,506 + Psyr_4892 0.18 +0.0
5,804,506 + Psyr_4892 0.18 -0.9
5,804,506 + Psyr_4892 0.18 +0.3
5,804,506 + Psyr_4892 0.18 +0.1
5,804,506 + Psyr_4892 0.18 +0.3
5,804,507 - Psyr_4892 0.18 +0.5
5,804,507 - Psyr_4892 0.18 -0.6
5,804,507 - Psyr_4892 0.18 -0.1
5,804,543 + Psyr_4892 0.21 +0.9
5,804,543 + Psyr_4892 0.21 +0.3
5,804,543 + Psyr_4892 0.21 -2.6
5,804,544 - Psyr_4892 0.21 -0.0
5,804,544 - Psyr_4892 0.21 +0.1
5,804,544 - Psyr_4892 0.21 -2.7
5,804,566 + Psyr_4892 0.22 +0.9
5,804,599 + Psyr_4892 0.24 +1.7
5,804,599 + Psyr_4892 0.24 +2.5
5,804,599 + Psyr_4892 0.24 +0.6
5,804,599 + Psyr_4892 0.24 -0.6
5,804,600 - Psyr_4892 0.24 +0.1
5,804,600 - Psyr_4892 0.24 -0.1
5,804,600 - Psyr_4892 0.24 -0.2
5,804,600 - Psyr_4892 0.24 -2.4
5,804,600 - Psyr_4892 0.24 +0.4
5,804,600 - Psyr_4892 0.24 -0.1
5,804,600 - Psyr_4892 0.24 -0.3
5,804,600 - Psyr_4892 0.24 +1.4
5,804,698 - Psyr_4892 0.31 -1.8
5,804,698 - Psyr_4892 0.31 -3.6
5,804,781 + Psyr_4892 0.36 -3.0
5,804,782 - Psyr_4892 0.36 +0.6
5,804,782 - Psyr_4892 0.36 +0.2
5,804,782 - Psyr_4892 0.36 +0.8
5,804,782 - Psyr_4892 0.36 -0.2
5,804,782 - Psyr_4892 0.36 +0.4
5,804,782 - Psyr_4892 0.36 -0.1
5,804,820 - Psyr_4892 0.39 -0.3
5,804,909 + Psyr_4892 0.44 +0.6
5,804,910 - Psyr_4892 0.44 -0.6
5,804,917 + Psyr_4892 0.45 +0.3
5,804,919 + Psyr_4892 0.45 -0.8
5,804,920 - Psyr_4892 0.45 -0.3
5,804,920 - Psyr_4892 0.45 +1.1
5,804,920 - Psyr_4892 0.45 -0.6
5,804,920 - Psyr_4892 0.45 -1.8
5,804,920 - Psyr_4892 0.45 +0.1

Or see this region's nucleotide sequence