Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4675

Experiment: epiphytic; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4674 and Psyr_4675 overlap by 38 nucleotidesPsyr_4675 and Psyr_4676 are separated by 55 nucleotidesPsyr_4676 and Psyr_4677 are separated by 403 nucleotides Psyr_4674: Psyr_4674 - Radical SAM, at 5,539,366 to 5,540,535 _4674 Psyr_4675: Psyr_4675 - Peptidase S9, prolyl oligopeptidase active site region, at 5,540,498 to 5,542,324 _4675 Psyr_4676: Psyr_4676 - Protein of unknown function UPF0057, at 5,542,380 to 5,542,541 _4676 Psyr_4677: Psyr_4677 - Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region, at 5,542,945 to 5,544,723 _4677 Position (kb) 5540 5541 5542 5543Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 5539.660 kb on + strand, within Psyr_4674at 5539.660 kb on + strand, within Psyr_4674at 5539.660 kb on + strand, within Psyr_4674at 5539.966 kb on + strand, within Psyr_4674at 5539.966 kb on + strand, within Psyr_4674at 5539.967 kb on - strand, within Psyr_4674at 5539.967 kb on - strand, within Psyr_4674at 5539.967 kb on - strand, within Psyr_4674at 5540.107 kb on + strand, within Psyr_4674at 5540.107 kb on + strand, within Psyr_4674at 5540.108 kb on - strand, within Psyr_4674at 5540.108 kb on - strand, within Psyr_4674at 5540.111 kb on - strand, within Psyr_4674at 5540.151 kb on + strand, within Psyr_4674at 5540.152 kb on - strand, within Psyr_4674at 5540.261 kb on - strand, within Psyr_4674at 5540.434 kb on - strandat 5540.434 kb on - strandat 5540.704 kb on - strand, within Psyr_4675at 5540.717 kb on + strand, within Psyr_4675at 5540.717 kb on + strand, within Psyr_4675at 5540.717 kb on + strand, within Psyr_4675at 5540.717 kb on + strand, within Psyr_4675at 5540.717 kb on + strand, within Psyr_4675at 5540.718 kb on - strand, within Psyr_4675at 5540.718 kb on - strand, within Psyr_4675at 5540.718 kb on - strand, within Psyr_4675at 5540.718 kb on - strand, within Psyr_4675at 5540.718 kb on - strand, within Psyr_4675at 5540.718 kb on - strand, within Psyr_4675at 5540.723 kb on + strand, within Psyr_4675at 5540.792 kb on + strand, within Psyr_4675at 5540.976 kb on - strand, within Psyr_4675at 5541.176 kb on + strand, within Psyr_4675at 5541.176 kb on + strand, within Psyr_4675at 5541.177 kb on - strand, within Psyr_4675at 5541.446 kb on + strand, within Psyr_4675at 5541.447 kb on - strand, within Psyr_4675at 5541.447 kb on - strand, within Psyr_4675at 5541.611 kb on + strand, within Psyr_4675at 5541.611 kb on + strand, within Psyr_4675at 5541.611 kb on + strand, within Psyr_4675at 5541.611 kb on + strand, within Psyr_4675at 5541.612 kb on - strand, within Psyr_4675at 5541.612 kb on - strand, within Psyr_4675at 5541.612 kb on - strand, within Psyr_4675at 5541.612 kb on - strand, within Psyr_4675at 5541.612 kb on - strand, within Psyr_4675at 5541.618 kb on - strand, within Psyr_4675at 5541.717 kb on - strand, within Psyr_4675at 5541.917 kb on + strand, within Psyr_4675at 5541.951 kb on + strand, within Psyr_4675at 5541.951 kb on + strand, within Psyr_4675at 5541.952 kb on - strand, within Psyr_4675at 5542.015 kb on + strand, within Psyr_4675at 5542.031 kb on + strand, within Psyr_4675at 5542.031 kb on + strand, within Psyr_4675at 5542.088 kb on - strand, within Psyr_4675at 5542.229 kb on + strandat 5542.229 kb on + strandat 5542.229 kb on + strandat 5542.230 kb on - strandat 5542.230 kb on - strandat 5542.230 kb on - strandat 5542.230 kb on - strandat 5542.381 kb on + strandat 5542.381 kb on + strandat 5542.381 kb on + strandat 5542.381 kb on + strandat 5542.381 kb on + strandat 5542.381 kb on + strandat 5542.402 kb on + strand, within Psyr_4676at 5542.402 kb on + strand, within Psyr_4676at 5542.402 kb on + strand, within Psyr_4676at 5542.402 kb on + strand, within Psyr_4676at 5542.402 kb on + strand, within Psyr_4676at 5542.402 kb on + strand, within Psyr_4676at 5542.402 kb on + strand, within Psyr_4676at 5542.402 kb on + strand, within Psyr_4676at 5542.402 kb on + strand, within Psyr_4676at 5542.402 kb on + strand, within Psyr_4676at 5542.403 kb on - strand, within Psyr_4676at 5542.403 kb on - strand, within Psyr_4676at 5542.403 kb on - strand, within Psyr_4676at 5542.403 kb on - strand, within Psyr_4676at 5542.403 kb on - strand, within Psyr_4676at 5542.403 kb on - strand, within Psyr_4676at 5542.403 kb on - strand, within Psyr_4676at 5542.429 kb on + strand, within Psyr_4676at 5542.429 kb on + strand, within Psyr_4676at 5542.430 kb on - strand, within Psyr_4676at 5542.430 kb on - strand, within Psyr_4676at 5542.430 kb on - strand, within Psyr_4676at 5542.452 kb on - strand, within Psyr_4676at 5542.479 kb on + strand, within Psyr_4676at 5542.479 kb on + strand, within Psyr_4676at 5542.479 kb on + strand, within Psyr_4676at 5542.479 kb on + strand, within Psyr_4676at 5542.480 kb on - strand, within Psyr_4676at 5542.527 kb on - strandat 5542.576 kb on + strandat 5542.577 kb on - strandat 5542.577 kb on - strandat 5542.635 kb on - strandat 5542.811 kb on + strandat 5542.811 kb on + strandat 5542.812 kb on - strandat 5542.812 kb on - strandat 5542.812 kb on - strandat 5542.824 kb on + strandat 5542.824 kb on + strandat 5542.824 kb on + strandat 5542.824 kb on + strandat 5542.825 kb on - strandat 5542.825 kb on - strandat 5542.825 kb on - strandat 5542.848 kb on + strandat 5542.867 kb on + strandat 5542.911 kb on + strandat 5542.911 kb on + strandat 5542.911 kb on + strandat 5542.912 kb on - strandat 5542.970 kb on + strandat 5542.970 kb on + strandat 5542.970 kb on + strandat 5542.970 kb on + strandat 5542.970 kb on + strandat 5542.970 kb on + strandat 5542.971 kb on - strandat 5543.039 kb on + strandat 5543.039 kb on + strandat 5543.039 kb on + strandat 5543.040 kb on - strandat 5543.040 kb on - strandat 5543.040 kb on - strandat 5543.040 kb on - strandat 5543.040 kb on - strandat 5543.069 kb on + strandat 5543.069 kb on + strandat 5543.126 kb on + strand, within Psyr_4677at 5543.126 kb on + strand, within Psyr_4677at 5543.126 kb on + strand, within Psyr_4677at 5543.126 kb on + strand, within Psyr_4677at 5543.126 kb on + strand, within Psyr_4677at 5543.126 kb on + strand, within Psyr_4677at 5543.126 kb on + strand, within Psyr_4677at 5543.126 kb on + strand, within Psyr_4677at 5543.126 kb on + strand, within Psyr_4677at 5543.126 kb on + strand, within Psyr_4677at 5543.126 kb on + strand, within Psyr_4677at 5543.126 kb on + strand, within Psyr_4677at 5543.126 kb on + strand, within Psyr_4677at 5543.127 kb on - strand, within Psyr_4677at 5543.127 kb on - strand, within Psyr_4677at 5543.127 kb on - strand, within Psyr_4677at 5543.127 kb on - strand, within Psyr_4677at 5543.127 kb on - strand, within Psyr_4677at 5543.127 kb on - strand, within Psyr_4677at 5543.127 kb on - strand, within Psyr_4677at 5543.127 kb on - strand, within Psyr_4677at 5543.127 kb on - strand, within Psyr_4677at 5543.127 kb on - strand, within Psyr_4677at 5543.132 kb on + strand, within Psyr_4677at 5543.133 kb on - strand, within Psyr_4677at 5543.160 kb on - strand, within Psyr_4677at 5543.160 kb on - strand, within Psyr_4677at 5543.160 kb on - strand, within Psyr_4677at 5543.160 kb on - strand, within Psyr_4677at 5543.160 kb on - strand, within Psyr_4677

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Green bean
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5,539,660 + Psyr_4674 0.25 +0.9
5,539,660 + Psyr_4674 0.25 +0.5
5,539,660 + Psyr_4674 0.25 -1.1
5,539,966 + Psyr_4674 0.51 +0.9
5,539,966 + Psyr_4674 0.51 +0.1
5,539,967 - Psyr_4674 0.51 +1.2
5,539,967 - Psyr_4674 0.51 +1.3
5,539,967 - Psyr_4674 0.51 -0.7
5,540,107 + Psyr_4674 0.63 -0.2
5,540,107 + Psyr_4674 0.63 +0.2
5,540,108 - Psyr_4674 0.63 -1.6
5,540,108 - Psyr_4674 0.63 -0.4
5,540,111 - Psyr_4674 0.64 -1.4
5,540,151 + Psyr_4674 0.67 +0.5
5,540,152 - Psyr_4674 0.67 +1.2
5,540,261 - Psyr_4674 0.76 -0.4
5,540,434 - -0.1
5,540,434 - +1.2
5,540,704 - Psyr_4675 0.11 +0.2
5,540,717 + Psyr_4675 0.12 +2.0
5,540,717 + Psyr_4675 0.12 -1.7
5,540,717 + Psyr_4675 0.12 +1.5
5,540,717 + Psyr_4675 0.12 +1.2
5,540,717 + Psyr_4675 0.12 -2.0
5,540,718 - Psyr_4675 0.12 +1.1
5,540,718 - Psyr_4675 0.12 -0.4
5,540,718 - Psyr_4675 0.12 -0.6
5,540,718 - Psyr_4675 0.12 +0.0
5,540,718 - Psyr_4675 0.12 +1.6
5,540,718 - Psyr_4675 0.12 +0.6
5,540,723 + Psyr_4675 0.12 -1.5
5,540,792 + Psyr_4675 0.16 +0.2
5,540,976 - Psyr_4675 0.26 -0.6
5,541,176 + Psyr_4675 0.37 +0.3
5,541,176 + Psyr_4675 0.37 -0.9
5,541,177 - Psyr_4675 0.37 -1.8
5,541,446 + Psyr_4675 0.52 -0.3
5,541,447 - Psyr_4675 0.52 +3.1
5,541,447 - Psyr_4675 0.52 +2.2
5,541,611 + Psyr_4675 0.61 -1.2
5,541,611 + Psyr_4675 0.61 +2.4
5,541,611 + Psyr_4675 0.61 -1.3
5,541,611 + Psyr_4675 0.61 +1.1
5,541,612 - Psyr_4675 0.61 +2.0
5,541,612 - Psyr_4675 0.61 +0.7
5,541,612 - Psyr_4675 0.61 -1.0
5,541,612 - Psyr_4675 0.61 +0.2
5,541,612 - Psyr_4675 0.61 +0.3
5,541,618 - Psyr_4675 0.61 -0.2
5,541,717 - Psyr_4675 0.67 +0.1
5,541,917 + Psyr_4675 0.78 +0.3
5,541,951 + Psyr_4675 0.80 -0.0
5,541,951 + Psyr_4675 0.80 -0.9
5,541,952 - Psyr_4675 0.80 +0.4
5,542,015 + Psyr_4675 0.83 +1.3
5,542,031 + Psyr_4675 0.84 +0.9
5,542,031 + Psyr_4675 0.84 -0.1
5,542,088 - Psyr_4675 0.87 +0.3
5,542,229 + +0.4
5,542,229 + -0.0
5,542,229 + -0.0
5,542,230 - +0.4
5,542,230 - +0.5
5,542,230 - +0.5
5,542,230 - -0.0
5,542,381 + -0.1
5,542,381 + +0.3
5,542,381 + -0.3
5,542,381 + +1.1
5,542,381 + +0.7
5,542,381 + -0.2
5,542,402 + Psyr_4676 0.14 +0.5
5,542,402 + Psyr_4676 0.14 -0.4
5,542,402 + Psyr_4676 0.14 +0.9
5,542,402 + Psyr_4676 0.14 +0.9
5,542,402 + Psyr_4676 0.14 +1.0
5,542,402 + Psyr_4676 0.14 -0.4
5,542,402 + Psyr_4676 0.14 +0.6
5,542,402 + Psyr_4676 0.14 -0.8
5,542,402 + Psyr_4676 0.14 +1.6
5,542,402 + Psyr_4676 0.14 +0.3
5,542,403 - Psyr_4676 0.14 -0.5
5,542,403 - Psyr_4676 0.14 +1.1
5,542,403 - Psyr_4676 0.14 -0.1
5,542,403 - Psyr_4676 0.14 -1.0
5,542,403 - Psyr_4676 0.14 +0.6
5,542,403 - Psyr_4676 0.14 +0.2
5,542,403 - Psyr_4676 0.14 -0.0
5,542,429 + Psyr_4676 0.30 -2.3
5,542,429 + Psyr_4676 0.30 -1.3
5,542,430 - Psyr_4676 0.31 +0.8
5,542,430 - Psyr_4676 0.31 -1.4
5,542,430 - Psyr_4676 0.31 +0.6
5,542,452 - Psyr_4676 0.44 -0.6
5,542,479 + Psyr_4676 0.61 +0.1
5,542,479 + Psyr_4676 0.61 +1.5
5,542,479 + Psyr_4676 0.61 +1.0
5,542,479 + Psyr_4676 0.61 +0.5
5,542,480 - Psyr_4676 0.62 -1.8
5,542,527 - -0.9
5,542,576 + -1.4
5,542,577 - +0.6
5,542,577 - +1.3
5,542,635 - +0.6
5,542,811 + +0.6
5,542,811 + +1.1
5,542,812 - +0.4
5,542,812 - -0.2
5,542,812 - +0.6
5,542,824 + +0.6
5,542,824 + -0.4
5,542,824 + +0.6
5,542,824 + -1.4
5,542,825 - -1.8
5,542,825 - -0.0
5,542,825 - +0.8
5,542,848 + +0.5
5,542,867 + +1.6
5,542,911 + +0.7
5,542,911 + +0.2
5,542,911 + -1.9
5,542,912 - -0.0
5,542,970 + +5.6
5,542,970 + -0.2
5,542,970 + +0.7
5,542,970 + +1.6
5,542,970 + -1.8
5,542,970 + +0.2
5,542,971 - -2.3
5,543,039 + -0.0
5,543,039 + -0.4
5,543,039 + -0.6
5,543,040 - +0.4
5,543,040 - -0.2
5,543,040 - -0.4
5,543,040 - +0.3
5,543,040 - +2.0
5,543,069 + -0.2
5,543,069 + +0.6
5,543,126 + Psyr_4677 0.10 +0.7
5,543,126 + Psyr_4677 0.10 +0.2
5,543,126 + Psyr_4677 0.10 -2.5
5,543,126 + Psyr_4677 0.10 +0.9
5,543,126 + Psyr_4677 0.10 -0.2
5,543,126 + Psyr_4677 0.10 +1.1
5,543,126 + Psyr_4677 0.10 -2.1
5,543,126 + Psyr_4677 0.10 +1.7
5,543,126 + Psyr_4677 0.10 +0.9
5,543,126 + Psyr_4677 0.10 +1.3
5,543,126 + Psyr_4677 0.10 -1.3
5,543,126 + Psyr_4677 0.10 -0.8
5,543,126 + Psyr_4677 0.10 +0.3
5,543,127 - Psyr_4677 0.10 +0.6
5,543,127 - Psyr_4677 0.10 +0.9
5,543,127 - Psyr_4677 0.10 +1.2
5,543,127 - Psyr_4677 0.10 +0.8
5,543,127 - Psyr_4677 0.10 +0.8
5,543,127 - Psyr_4677 0.10 -0.4
5,543,127 - Psyr_4677 0.10 -0.3
5,543,127 - Psyr_4677 0.10 -0.2
5,543,127 - Psyr_4677 0.10 +1.1
5,543,127 - Psyr_4677 0.10 -2.3
5,543,132 + Psyr_4677 0.11 +0.0
5,543,133 - Psyr_4677 0.11 +0.4
5,543,160 - Psyr_4677 0.12 +0.6
5,543,160 - Psyr_4677 0.12 -1.1
5,543,160 - Psyr_4677 0.12 +1.1
5,543,160 - Psyr_4677 0.12 +2.1
5,543,160 - Psyr_4677 0.12 -0.3

Or see this region's nucleotide sequence