Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4651

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
5,512,260	+		Psyr_4650	0.66	+0.2
5,512,279	-		Psyr_4650	0.69	+1.1
5,512,393	-		Psyr_4650	0.86	-0.3
5,512,393	-		Psyr_4650	0.86	+2.0
5,512,482	+				-0.0
5,512,482	+				-0.0
5,512,482	+				-1.7
5,512,483	-				+0.8
5,512,483	-				-0.3
5,512,483	-				+1.3
5,512,521	+				-0.5
5,512,533	+				-2.8
5,512,533	+				+0.1
5,512,533	+				+0.3
5,512,534	-				+1.1
5,512,534	-				-0.8
5,512,689	+				+2.2
5,512,915	+				+0.7
5,512,947	+				+0.3
5,512,948	-				-0.3
5,513,022	+				+1.2
5,513,022	+				-1.5
5,513,022	+				+1.2
5,513,023	-				+0.3
5,513,045	+				-0.5
5,513,045	+				-0.6
5,513,045	+				-0.8
5,513,045	+				+1.5
5,513,046	-				+0.6
5,513,046	-				-0.3
5,513,046	-				-0.3
5,513,046	-				+0.4
5,513,046	-				-1.1
5,513,046	-				+0.7
5,513,103	-				-2.4
5,513,113	+				-2.5
5,513,114	-				-0.4
5,513,114	-				+1.8
5,513,114	-				-0.6
5,513,114	-				-0.8
5,513,115	+				+0.2
5,513,115	+				-0.2
5,513,115	+				+0.8
5,513,115	+				-0.4
5,513,115	+				-0.3
5,513,115	+				-3.1
5,513,115	+				-1.3
5,513,115	+				+1.1
5,513,116	-				-1.0
5,513,116	-				+1.9
5,513,116	-				-1.0
5,513,116	-				-0.1
5,513,157	+				-0.5
5,513,157	+				+0.3
5,513,197	+				+0.5
5,513,198	-				+0.3
5,513,198	-				-0.6
5,513,198	-				-1.6
5,513,204	-				+0.5
5,513,253	+				+1.5
5,513,253	+				-0.4
5,513,253	+				-0.1
5,513,254	-				+1.5
5,513,254	-				-0.0
5,513,254	-				+0.6
5,513,254	-				-0.9
5,513,274	+				-0.0
5,513,274	+				+0.3
5,513,275	-				-0.8
5,513,310	+				+1.2
5,513,311	-				+0.6
5,513,407	-				-0.1
5,513,419	+				+1.7
5,513,420	-				-0.7
5,513,485	+		Psyr_4651	0.13	-2.0
5,513,485	+		Psyr_4651	0.13	+0.1
5,513,486	-		Psyr_4651	0.13	+0.9
5,513,486	-		Psyr_4651	0.13	+1.2
5,513,498	+		Psyr_4651	0.14	+0.6
5,513,676	-		Psyr_4651	0.23	-2.9
5,513,709	+		Psyr_4651	0.24	-3.0
5,513,709	+		Psyr_4651	0.24	-0.7
5,513,907	+		Psyr_4651	0.35	-1.9
5,513,908	-		Psyr_4651	0.35	-1.3
5,514,042	+		Psyr_4651	0.42	+1.4
5,514,042	+		Psyr_4651	0.42	-1.0
5,514,043	-		Psyr_4651	0.42	+1.5
5,514,069	+		Psyr_4651	0.43	-2.4
5,514,069	+		Psyr_4651	0.43	+3.0
5,514,069	+		Psyr_4651	0.43	+2.2
5,514,069	+		Psyr_4651	0.43	+1.1
5,514,070	-		Psyr_4651	0.43	+0.7
5,514,070	-		Psyr_4651	0.43	-0.3
5,514,070	-		Psyr_4651	0.43	+0.3
5,514,070	-		Psyr_4651	0.43	+0.7
5,514,070	-		Psyr_4651	0.43	+1.1
5,514,070	-		Psyr_4651	0.43	+0.5
5,514,070	-		Psyr_4651	0.43	-1.3
5,514,070	-		Psyr_4651	0.43	-0.5
5,514,070	-		Psyr_4651	0.43	+1.9
5,514,072	+		Psyr_4651	0.43	+0.5
5,514,072	+		Psyr_4651	0.43	-0.4
5,514,072	+		Psyr_4651	0.43	-1.0
5,514,072	+		Psyr_4651	0.43	+1.2
5,514,072	+		Psyr_4651	0.43	-0.9
5,514,072	+		Psyr_4651	0.43	-3.2
5,514,072	+		Psyr_4651	0.43	-0.5
5,514,072	+		Psyr_4651	0.43	+2.5
5,514,072	+		Psyr_4651	0.43	-0.4
5,514,072	+		Psyr_4651	0.43	+0.7
5,514,073	-		Psyr_4651	0.43	+0.9
5,514,073	-		Psyr_4651	0.43	-0.9
5,514,073	-		Psyr_4651	0.43	-1.0
5,514,073	-		Psyr_4651	0.43	-1.9
5,514,073	-		Psyr_4651	0.43	+0.2
5,514,073	-		Psyr_4651	0.43	+0.2
5,514,073	-		Psyr_4651	0.43	+0.6
5,514,073	-		Psyr_4651	0.43	+1.1
5,514,073	-		Psyr_4651	0.43	-1.2
5,514,073	-		Psyr_4651	0.43	+0.6
5,514,073	-		Psyr_4651	0.43	-1.2
5,514,073	-		Psyr_4651	0.43	-0.7
5,514,073	-		Psyr_4651	0.43	+1.0
5,514,073	-		Psyr_4651	0.43	+1.5
5,514,162	+		Psyr_4651	0.48	-1.0
5,514,162	+		Psyr_4651	0.48	+0.5
5,514,163	-		Psyr_4651	0.48	-0.8
5,514,163	-		Psyr_4651	0.48	-0.3
5,514,163	-		Psyr_4651	0.48	+0.7
5,514,163	-		Psyr_4651	0.48	-1.3
5,514,204	+		Psyr_4651	0.50	-0.0
5,514,204	+		Psyr_4651	0.50	+0.8
5,514,204	+		Psyr_4651	0.50	-1.6
5,514,204	+		Psyr_4651	0.50	+0.1
5,514,205	-		Psyr_4651	0.50	+1.2
5,514,205	-		Psyr_4651	0.50	-0.3
5,514,205	-		Psyr_4651	0.50	+1.5
5,514,205	-		Psyr_4651	0.50	+0.4
5,514,210	-		Psyr_4651	0.50	-0.4
5,514,259	+		Psyr_4651	0.53	-0.3
5,514,260	-		Psyr_4651	0.53	-0.9
5,514,260	-		Psyr_4651	0.53	-0.4
5,514,260	-		Psyr_4651	0.53	+0.9
5,514,260	-		Psyr_4651	0.53	+1.5
5,514,260	-		Psyr_4651	0.53	+0.3
5,514,288	-		Psyr_4651	0.54	+1.8
5,514,288	-		Psyr_4651	0.54	+1.1
5,514,299	-		Psyr_4651	0.55	-0.3
5,514,299	-		Psyr_4651	0.55	-0.5
5,514,376	-		Psyr_4651	0.59	+0.7
5,514,376	-		Psyr_4651	0.59	+0.5
5,514,399	+		Psyr_4651	0.60	+0.5
5,514,399	+		Psyr_4651	0.60	+0.2
5,514,399	+		Psyr_4651	0.60	+1.4
5,514,400	-		Psyr_4651	0.60	-1.5
5,514,400	-		Psyr_4651	0.60	+0.5
5,514,405	+		Psyr_4651	0.61	+1.5
5,514,405	+		Psyr_4651	0.61	-0.8
5,514,406	-		Psyr_4651	0.61	+0.4
5,514,476	+		Psyr_4651	0.64	-0.9
5,514,477	-		Psyr_4651	0.64	+0.3
5,514,477	-		Psyr_4651	0.64	+1.1
5,514,503	+		Psyr_4651	0.66	+0.2
5,514,504	-		Psyr_4651	0.66	-0.2
5,514,504	-		Psyr_4651	0.66	-0.7
5,514,517	+		Psyr_4651	0.66	-1.3
5,514,517	+		Psyr_4651	0.66	-3.5
5,514,517	+		Psyr_4651	0.66	+0.4
5,514,517	+		Psyr_4651	0.66	+0.5
5,514,517	+		Psyr_4651	0.66	+2.1
5,514,518	-		Psyr_4651	0.66	+0.4
5,514,518	-		Psyr_4651	0.66	+2.1
5,514,518	-		Psyr_4651	0.66	-0.9
5,514,518	-		Psyr_4651	0.66	-0.0
5,514,518	-		Psyr_4651	0.66	-1.6
5,514,518	-		Psyr_4651	0.66	+2.2
5,514,518	-		Psyr_4651	0.66	+1.0
5,514,518	-		Psyr_4651	0.66	+0.3
5,514,518	-		Psyr_4651	0.66	-0.0
5,514,518	-		Psyr_4651	0.66	-0.5
5,514,520	-		Psyr_4651	0.66	-0.9
5,514,539	+		Psyr_4651	0.67	+0.5
5,514,539	+		Psyr_4651	0.67	-1.3
5,514,539	+		Psyr_4651	0.67	+0.5
5,514,540	-		Psyr_4651	0.67	-0.5
5,514,540	-		Psyr_4651	0.67	-1.3
5,514,540	-		Psyr_4651	0.67	-1.6
5,514,540	-		Psyr_4651	0.67	+0.1
5,514,540	-		Psyr_4651	0.67	-0.3
5,514,540	-		Psyr_4651	0.67	+0.8
5,514,585	+		Psyr_4651	0.70	-0.0
5,514,585	+		Psyr_4651	0.70	+0.4
5,514,586	-		Psyr_4651	0.70	+1.7
5,514,628	+		Psyr_4651	0.72	+0.4
5,514,628	+		Psyr_4651	0.72	+0.4
5,514,628	+		Psyr_4651	0.72	-0.9
5,514,631	-		Psyr_4651	0.72	-0.2
5,514,665	+		Psyr_4651	0.74	-0.7
5,514,665	+		Psyr_4651	0.74	-0.0
5,514,665	+		Psyr_4651	0.74	-0.3
5,514,666	-		Psyr_4651	0.74	-0.0
5,514,666	-		Psyr_4651	0.74	-0.0
5,514,666	-		Psyr_4651	0.74	+0.4
5,514,737	+		Psyr_4651	0.78	-0.4
5,514,738	-		Psyr_4651	0.78	+0.1
5,514,738	-		Psyr_4651	0.78	-1.5
5,514,748	+		Psyr_4651	0.78	+0.8
5,514,748	+		Psyr_4651	0.78	-0.4
5,514,748	+		Psyr_4651	0.78	+0.7
5,514,748	+		Psyr_4651	0.78	+1.7
5,514,748	+		Psyr_4651	0.78	+0.6
5,514,748	+		Psyr_4651	0.78	-0.1
5,514,748	+		Psyr_4651	0.78	+1.0
5,514,748	+		Psyr_4651	0.78	+0.7
5,514,748	+		Psyr_4651	0.78	+0.7
5,514,748	+		Psyr_4651	0.78	+0.2
5,514,748	+		Psyr_4651	0.78	+0.2
5,514,748	+		Psyr_4651	0.78	+0.5
5,514,748	+		Psyr_4651	0.78	-0.0
5,514,749	-		Psyr_4651	0.78	+0.5
5,514,749	-		Psyr_4651	0.78	+0.5
5,514,749	-		Psyr_4651	0.78	-0.5
5,514,749	-		Psyr_4651	0.78	-0.2
5,514,749	-		Psyr_4651	0.78	+2.0
5,514,749	-		Psyr_4651	0.78	-0.5
5,514,749	-		Psyr_4651	0.78	-0.4
5,514,749	-		Psyr_4651	0.78	+0.8
5,514,749	-		Psyr_4651	0.78	+0.2
5,514,749	-		Psyr_4651	0.78	+1.1
5,514,749	-		Psyr_4651	0.78	+0.6
5,514,749	-		Psyr_4651	0.78	+1.1
5,514,750	+		Psyr_4651	0.78	+0.6
5,514,750	+		Psyr_4651	0.78	-2.5
5,514,750	+		Psyr_4651	0.78	-0.7
5,514,750	+		Psyr_4651	0.78	+1.2
5,514,751	-		Psyr_4651	0.78	+0.4
5,514,751	-		Psyr_4651	0.78	-0.1
5,514,751	-		Psyr_4651	0.78	+0.1
5,514,751	-		Psyr_4651	0.78	+0.2
5,514,950	+		Psyr_4651	0.89	-1.7
5,514,951	-		Psyr_4651	0.89	+0.1
5,514,982	-				-0.1
5,514,994	-				-0.6
5,515,070	+				+0.8
5,515,116	+				+0.9
5,515,116	+				+0.7
5,515,138	-				+0.3
5,515,588	-				+0.2
5,515,596	+				+0.8
5,515,596	+				-0.6
5,515,600	+				-0.3
5,515,746	+				-1.5
5,515,746	+				-0.1
5,515,747	-				-1.9
5,515,765	-				-0.6
5,515,838	-				-0.2
5,515,861	+				-0.2
5,515,861	+				+0.3
5,515,862	-				+0.8
5,515,863	+				-2.3
5,515,863	+				+0.7
5,515,863	+				-1.0
5,515,864	-				+0.3
5,515,905	-				-0.8
5,515,905	-				-0.3
5,515,913	+				-1.4
5,515,913	+				+0.3
5,515,913	+				-0.2
5,515,913	+				-1.4
5,515,913	+				+0.0
5,515,914	-				+0.5
5,515,914	-				+1.3
5,515,914	-				-2.0
5,515,914	-				+0.9
5,515,914	-				+0.3
5,516,005	+		Psyr_4653	0.37	+1.5
5,516,006	-		Psyr_4653	0.38	-0.3
5,516,006	-		Psyr_4653	0.38	-0.0
5,516,006	-		Psyr_4653	0.38	-0.0
5,516,006	-		Psyr_4653	0.38	+2.1
5,516,006	-		Psyr_4653	0.38	-0.2
5,516,006	-		Psyr_4653	0.38	+0.0
5,516,006	-		Psyr_4653	0.38	+0.4
5,516,006	-		Psyr_4653	0.38	-2.5
5,516,102	+		Psyr_4653	0.76	+0.8
5,516,102	+		Psyr_4653	0.76	-1.7
5,516,103	-		Psyr_4653	0.77	-0.5
5,516,103	-		Psyr_4653	0.77	+2.3
5,516,103	-		Psyr_4653	0.77	+0.2
5,516,103	-		Psyr_4653	0.77	-1.0
5,516,103	-		Psyr_4653	0.77	+0.7
5,516,103	-		Psyr_4653	0.77	+1.6
5,516,103	-		Psyr_4653	0.77	-0.9
5,516,103	-		Psyr_4653	0.77	-0.8
5,516,103	-		Psyr_4653	0.77	+1.4
5,516,139	+				+0.4
5,516,139	+				+0.2
5,516,139	+				-0.3
5,516,139	+				+0.2
5,516,140	-				-0.6