Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4647 and Psyr_4648 are separated by 66 nucleotides Psyr_4648 and Psyr_4649 are separated by 79 nucleotides Psyr_4649 and Psyr_4650 overlap by 8 nucleotides Psyr_4650 and Psyr_4651 are separated by 746 nucleotides
Psyr_4647: Psyr_4647 - hypothetical protein, at 5,510,601 to 5,510,921
_4647
Psyr_4648: Psyr_4648 - hypothetical protein, at 5,510,988 to 5,511,227
_4648
Psyr_4649: Psyr_4649 - GCN5-related N-acetyltransferase, at 5,511,307 to 5,511,816
_4649
Psyr_4650: Psyr_4650 - CDS, at 5,511,809 to 5,512,489
_4650
Psyr_4651: Psyr_4651 - S-type Pyocin, at 5,513,236 to 5,515,167
_4651
Position (kb) 5511
5512
5513 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5510.831 kb on + strand, within Psyr_4647 at 5510.831 kb on + strand, within Psyr_4647 at 5510.831 kb on + strand, within Psyr_4647 at 5510.831 kb on + strand, within Psyr_4647 at 5510.832 kb on - strand, within Psyr_4647 at 5510.832 kb on - strand, within Psyr_4647 at 5510.832 kb on - strand, within Psyr_4647 at 5510.832 kb on - strand, within Psyr_4647 at 5510.832 kb on - strand, within Psyr_4647 at 5510.915 kb on + strand at 5510.935 kb on + strand at 5510.935 kb on + strand at 5510.935 kb on + strand at 5510.935 kb on + strand at 5510.935 kb on + strand at 5510.935 kb on + strand at 5510.935 kb on + strand at 5510.935 kb on + strand at 5510.935 kb on + strand at 5510.935 kb on + strand at 5510.936 kb on - strand at 5510.936 kb on - strand at 5510.936 kb on - strand at 5510.936 kb on - strand at 5510.936 kb on - strand at 5510.936 kb on - strand at 5510.936 kb on - strand at 5510.936 kb on - strand at 5510.936 kb on - strand at 5510.936 kb on - strand at 5510.989 kb on + strand at 5510.990 kb on - strand at 5510.995 kb on + strand at 5511.023 kb on + strand, within Psyr_4648 at 5511.023 kb on + strand, within Psyr_4648 at 5511.023 kb on + strand, within Psyr_4648 at 5511.023 kb on + strand, within Psyr_4648 at 5511.023 kb on + strand, within Psyr_4648 at 5511.024 kb on - strand, within Psyr_4648 at 5511.024 kb on - strand, within Psyr_4648 at 5511.024 kb on - strand, within Psyr_4648 at 5511.024 kb on - strand, within Psyr_4648 at 5511.024 kb on - strand, within Psyr_4648 at 5511.024 kb on - strand, within Psyr_4648 at 5511.024 kb on - strand, within Psyr_4648 at 5511.024 kb on - strand, within Psyr_4648 at 5511.024 kb on - strand, within Psyr_4648 at 5511.024 kb on - strand, within Psyr_4648 at 5511.024 kb on - strand, within Psyr_4648 at 5511.024 kb on - strand, within Psyr_4648 at 5511.039 kb on + strand, within Psyr_4648 at 5511.040 kb on - strand, within Psyr_4648 at 5511.202 kb on + strand, within Psyr_4648 at 5511.212 kb on + strand at 5511.212 kb on + strand at 5511.212 kb on + strand at 5511.212 kb on + strand at 5511.212 kb on + strand at 5511.212 kb on + strand at 5511.212 kb on + strand at 5511.212 kb on + strand at 5511.212 kb on + strand at 5511.212 kb on + strand at 5511.212 kb on + strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.281 kb on + strand at 5511.327 kb on + strand at 5511.327 kb on + strand at 5511.327 kb on + strand at 5511.328 kb on - strand at 5511.328 kb on - strand at 5511.328 kb on - strand at 5511.339 kb on + strand at 5511.339 kb on + strand at 5511.339 kb on + strand at 5511.339 kb on + strand at 5511.339 kb on + strand at 5511.340 kb on - strand at 5511.340 kb on - strand at 5511.340 kb on - strand at 5511.342 kb on + strand at 5511.342 kb on + strand at 5511.342 kb on + strand at 5511.342 kb on + strand at 5511.343 kb on - strand at 5511.343 kb on - strand at 5511.343 kb on - strand at 5511.401 kb on + strand, within Psyr_4649 at 5511.401 kb on + strand, within Psyr_4649 at 5511.401 kb on + strand, within Psyr_4649 at 5511.401 kb on + strand, within Psyr_4649 at 5511.401 kb on + strand, within Psyr_4649 at 5511.401 kb on + strand, within Psyr_4649 at 5511.401 kb on + strand, within Psyr_4649 at 5511.401 kb on + strand, within Psyr_4649 at 5511.402 kb on - strand, within Psyr_4649 at 5511.418 kb on - strand, within Psyr_4649 at 5511.636 kb on + strand, within Psyr_4649 at 5511.636 kb on + strand, within Psyr_4649 at 5511.637 kb on - strand, within Psyr_4649 at 5511.637 kb on - strand, within Psyr_4649 at 5511.637 kb on - strand, within Psyr_4649 at 5511.637 kb on - strand, within Psyr_4649 at 5511.671 kb on + strand, within Psyr_4649 at 5511.671 kb on + strand, within Psyr_4649 at 5511.672 kb on - strand, within Psyr_4649 at 5511.672 kb on - strand, within Psyr_4649 at 5511.672 kb on - strand, within Psyr_4649 at 5511.672 kb on - strand, within Psyr_4649 at 5511.689 kb on + strand, within Psyr_4649 at 5511.689 kb on + strand, within Psyr_4649 at 5511.689 kb on + strand, within Psyr_4649 at 5511.690 kb on - strand, within Psyr_4649 at 5511.690 kb on - strand, within Psyr_4649 at 5511.748 kb on + strand, within Psyr_4649 at 5511.748 kb on + strand, within Psyr_4649 at 5511.749 kb on - strand, within Psyr_4649 at 5511.753 kb on + strand, within Psyr_4649 at 5511.753 kb on + strand, within Psyr_4649 at 5511.753 kb on + strand, within Psyr_4649 at 5511.753 kb on + strand, within Psyr_4649 at 5511.753 kb on + strand, within Psyr_4649 at 5511.753 kb on + strand, within Psyr_4649 at 5511.753 kb on + strand, within Psyr_4649 at 5511.753 kb on + strand, within Psyr_4649 at 5511.753 kb on + strand, within Psyr_4649 at 5511.753 kb on + strand, within Psyr_4649 at 5511.753 kb on + strand, within Psyr_4649 at 5511.753 kb on + strand, within Psyr_4649 at 5511.754 kb on - strand, within Psyr_4649 at 5511.754 kb on - strand, within Psyr_4649 at 5511.754 kb on - strand, within Psyr_4649 at 5511.754 kb on - strand, within Psyr_4649 at 5511.754 kb on - strand, within Psyr_4649 at 5511.754 kb on - strand, within Psyr_4649 at 5511.754 kb on - strand, within Psyr_4649 at 5511.754 kb on - strand, within Psyr_4649 at 5511.754 kb on - strand, within Psyr_4649 at 5511.764 kb on - strand, within Psyr_4649 at 5511.764 kb on - strand, within Psyr_4649 at 5511.764 kb on - strand, within Psyr_4649 at 5511.764 kb on - strand, within Psyr_4649 at 5511.766 kb on + strand at 5511.767 kb on - strand at 5511.794 kb on + strand at 5511.794 kb on + strand at 5511.818 kb on + strand at 5511.818 kb on + strand at 5511.818 kb on + strand at 5511.881 kb on + strand, within Psyr_4650 at 5511.881 kb on + strand, within Psyr_4650 at 5511.881 kb on + strand, within Psyr_4650 at 5511.881 kb on + strand, within Psyr_4650 at 5511.881 kb on + strand, within Psyr_4650 at 5511.881 kb on + strand, within Psyr_4650 at 5511.881 kb on + strand, within Psyr_4650 at 5511.881 kb on + strand, within Psyr_4650 at 5511.881 kb on + strand, within Psyr_4650 at 5511.881 kb on + strand, within Psyr_4650 at 5511.881 kb on + strand, within Psyr_4650 at 5511.882 kb on - strand, within Psyr_4650 at 5511.882 kb on - strand, within Psyr_4650 at 5511.882 kb on - strand, within Psyr_4650 at 5511.882 kb on - strand, within Psyr_4650 at 5511.882 kb on - strand, within Psyr_4650 at 5511.882 kb on - strand, within Psyr_4650 at 5511.882 kb on - strand, within Psyr_4650 at 5511.882 kb on - strand, within Psyr_4650 at 5511.882 kb on - strand, within Psyr_4650 at 5511.894 kb on + strand, within Psyr_4650 at 5511.894 kb on + strand, within Psyr_4650 at 5511.895 kb on - strand, within Psyr_4650 at 5511.900 kb on + strand, within Psyr_4650 at 5511.901 kb on - strand, within Psyr_4650 at 5512.039 kb on + strand, within Psyr_4650 at 5512.040 kb on - strand, within Psyr_4650 at 5512.096 kb on + strand, within Psyr_4650 at 5512.104 kb on + strand, within Psyr_4650 at 5512.105 kb on - strand, within Psyr_4650 at 5512.208 kb on + strand, within Psyr_4650 at 5512.260 kb on + strand, within Psyr_4650 at 5512.279 kb on - strand, within Psyr_4650 at 5512.393 kb on - strand, within Psyr_4650 at 5512.393 kb on - strand, within Psyr_4650 at 5512.482 kb on + strand at 5512.482 kb on + strand at 5512.482 kb on + strand at 5512.483 kb on - strand at 5512.483 kb on - strand at 5512.483 kb on - strand at 5512.521 kb on + strand at 5512.533 kb on + strand at 5512.533 kb on + strand at 5512.533 kb on + strand at 5512.534 kb on - strand at 5512.534 kb on - strand at 5512.689 kb on + strand at 5512.915 kb on + strand at 5512.947 kb on + strand at 5512.948 kb on - strand at 5513.022 kb on + strand at 5513.022 kb on + strand at 5513.022 kb on + strand at 5513.023 kb on - strand at 5513.045 kb on + strand at 5513.045 kb on + strand at 5513.045 kb on + strand at 5513.045 kb on + strand at 5513.046 kb on - strand at 5513.046 kb on - strand at 5513.046 kb on - strand at 5513.046 kb on - strand at 5513.046 kb on - strand at 5513.046 kb on - strand at 5513.103 kb on - strand at 5513.113 kb on + strand at 5513.114 kb on - strand at 5513.114 kb on - strand at 5513.114 kb on - strand at 5513.114 kb on - strand at 5513.115 kb on + strand at 5513.115 kb on + strand at 5513.115 kb on + strand at 5513.115 kb on + strand at 5513.115 kb on + strand at 5513.115 kb on + strand at 5513.115 kb on + strand at 5513.115 kb on + strand at 5513.116 kb on - strand at 5513.116 kb on - strand at 5513.116 kb on - strand at 5513.116 kb on - strand at 5513.157 kb on + strand at 5513.157 kb on + strand at 5513.197 kb on + strand at 5513.198 kb on - strand at 5513.198 kb on - strand at 5513.198 kb on - strand at 5513.204 kb on - strand at 5513.253 kb on + strand at 5513.253 kb on + strand at 5513.253 kb on + strand at 5513.254 kb on - strand at 5513.254 kb on - strand at 5513.254 kb on - strand at 5513.254 kb on - strand at 5513.274 kb on + strand at 5513.274 kb on + strand at 5513.275 kb on - strand at 5513.310 kb on + strand at 5513.311 kb on - strand at 5513.407 kb on - strand at 5513.419 kb on + strand at 5513.420 kb on - strand at 5513.485 kb on + strand, within Psyr_4651 at 5513.485 kb on + strand, within Psyr_4651 at 5513.486 kb on - strand, within Psyr_4651 at 5513.486 kb on - strand, within Psyr_4651
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 5,510,831 + Psyr_4647 0.72 -2.0 5,510,831 + Psyr_4647 0.72 +0.1 5,510,831 + Psyr_4647 0.72 -0.7 5,510,831 + Psyr_4647 0.72 -1.3 5,510,832 - Psyr_4647 0.72 -0.2 5,510,832 - Psyr_4647 0.72 +0.0 5,510,832 - Psyr_4647 0.72 -0.9 5,510,832 - Psyr_4647 0.72 -0.2 5,510,832 - Psyr_4647 0.72 +1.4 5,510,915 + -1.5 5,510,935 + +0.7 5,510,935 + +0.9 5,510,935 + -1.8 5,510,935 + +0.3 5,510,935 + +0.7 5,510,935 + -0.2 5,510,935 + -0.9 5,510,935 + +0.8 5,510,935 + +0.5 5,510,935 + -0.5 5,510,936 - +0.4 5,510,936 - +0.1 5,510,936 - -1.0 5,510,936 - -1.0 5,510,936 - -0.4 5,510,936 - -0.2 5,510,936 - +1.0 5,510,936 - +0.5 5,510,936 - +0.5 5,510,936 - +0.3 5,510,989 + -1.2 5,510,990 - +0.8 5,510,995 + +1.5 5,511,023 + Psyr_4648 0.15 +0.3 5,511,023 + Psyr_4648 0.15 +0.4 5,511,023 + Psyr_4648 0.15 -2.9 5,511,023 + Psyr_4648 0.15 -1.4 5,511,023 + Psyr_4648 0.15 +1.0 5,511,024 - Psyr_4648 0.15 -2.0 5,511,024 - Psyr_4648 0.15 +0.3 5,511,024 - Psyr_4648 0.15 -0.3 5,511,024 - Psyr_4648 0.15 +1.3 5,511,024 - Psyr_4648 0.15 -0.9 5,511,024 - Psyr_4648 0.15 +0.1 5,511,024 - Psyr_4648 0.15 -0.4 5,511,024 - Psyr_4648 0.15 +0.7 5,511,024 - Psyr_4648 0.15 -0.1 5,511,024 - Psyr_4648 0.15 +0.0 5,511,024 - Psyr_4648 0.15 +1.3 5,511,024 - Psyr_4648 0.15 -0.7 5,511,039 + Psyr_4648 0.21 -1.1 5,511,040 - Psyr_4648 0.22 +0.2 5,511,202 + Psyr_4648 0.89 -2.1 5,511,212 + -0.5 5,511,212 + -0.3 5,511,212 + -2.9 5,511,212 + +1.8 5,511,212 + +2.1 5,511,212 + -1.0 5,511,212 + +0.7 5,511,212 + +1.5 5,511,212 + -0.4 5,511,212 + -0.2 5,511,212 + +0.5 5,511,213 - +1.0 5,511,213 - -0.2 5,511,213 - -0.5 5,511,213 - -0.3 5,511,213 - -2.1 5,511,213 - +0.8 5,511,213 - -0.0 5,511,213 - +2.0 5,511,213 - +0.7 5,511,213 - -1.0 5,511,213 - -0.7 5,511,213 - +1.5 5,511,213 - +0.2 5,511,213 - +1.4 5,511,213 - +1.0 5,511,213 - -0.9 5,511,281 + -0.3 5,511,327 + -0.9 5,511,327 + +0.7 5,511,327 + +0.8 5,511,328 - +0.8 5,511,328 - +0.5 5,511,328 - +1.8 5,511,339 + +0.1 5,511,339 + -0.0 5,511,339 + -1.0 5,511,339 + +0.3 5,511,339 + -0.2 5,511,340 - -0.2 5,511,340 - +1.9 5,511,340 - -0.5 5,511,342 + +0.6 5,511,342 + -3.3 5,511,342 + +2.9 5,511,342 + +0.1 5,511,343 - -0.2 5,511,343 - -0.4 5,511,343 - +0.2 5,511,401 + Psyr_4649 0.18 +0.8 5,511,401 + Psyr_4649 0.18 +0.7 5,511,401 + Psyr_4649 0.18 +1.7 5,511,401 + Psyr_4649 0.18 +0.5 5,511,401 + Psyr_4649 0.18 -0.8 5,511,401 + Psyr_4649 0.18 +0.5 5,511,401 + Psyr_4649 0.18 +1.2 5,511,401 + Psyr_4649 0.18 -0.6 5,511,402 - Psyr_4649 0.19 -1.5 5,511,418 - Psyr_4649 0.22 +0.2 5,511,636 + Psyr_4649 0.65 +3.3 5,511,636 + Psyr_4649 0.65 +0.2 5,511,637 - Psyr_4649 0.65 -0.3 5,511,637 - Psyr_4649 0.65 -1.6 5,511,637 - Psyr_4649 0.65 +2.7 5,511,637 - Psyr_4649 0.65 +0.7 5,511,671 + Psyr_4649 0.71 -1.5 5,511,671 + Psyr_4649 0.71 +0.7 5,511,672 - Psyr_4649 0.72 -1.0 5,511,672 - Psyr_4649 0.72 +0.7 5,511,672 - Psyr_4649 0.72 +0.3 5,511,672 - Psyr_4649 0.72 +0.9 5,511,689 + Psyr_4649 0.75 +0.3 5,511,689 + Psyr_4649 0.75 +0.2 5,511,689 + Psyr_4649 0.75 +2.0 5,511,690 - Psyr_4649 0.75 +0.5 5,511,690 - Psyr_4649 0.75 +1.0 5,511,748 + Psyr_4649 0.86 +0.3 5,511,748 + Psyr_4649 0.86 +0.5 5,511,749 - Psyr_4649 0.87 -0.1 5,511,753 + Psyr_4649 0.87 +0.3 5,511,753 + Psyr_4649 0.87 +0.3 5,511,753 + Psyr_4649 0.87 +1.0 5,511,753 + Psyr_4649 0.87 +0.9 5,511,753 + Psyr_4649 0.87 +0.6 5,511,753 + Psyr_4649 0.87 +0.2 5,511,753 + Psyr_4649 0.87 +0.2 5,511,753 + Psyr_4649 0.87 +0.5 5,511,753 + Psyr_4649 0.87 +0.0 5,511,753 + Psyr_4649 0.87 +0.5 5,511,753 + Psyr_4649 0.87 +0.8 5,511,753 + Psyr_4649 0.87 -0.4 5,511,754 - Psyr_4649 0.88 +0.2 5,511,754 - Psyr_4649 0.88 +0.3 5,511,754 - Psyr_4649 0.88 +0.3 5,511,754 - Psyr_4649 0.88 +1.4 5,511,754 - Psyr_4649 0.88 +0.8 5,511,754 - Psyr_4649 0.88 -1.6 5,511,754 - Psyr_4649 0.88 +0.5 5,511,754 - Psyr_4649 0.88 -0.6 5,511,754 - Psyr_4649 0.88 -0.3 5,511,764 - Psyr_4649 0.90 +0.9 5,511,764 - Psyr_4649 0.90 +1.3 5,511,764 - Psyr_4649 0.90 +0.4 5,511,764 - Psyr_4649 0.90 -0.4 5,511,766 + -0.6 5,511,767 - +0.3 5,511,794 + +0.1 5,511,794 + -2.2 5,511,818 + +0.3 5,511,818 + +0.1 5,511,818 + -0.2 5,511,881 + Psyr_4650 0.11 +0.7 5,511,881 + Psyr_4650 0.11 -0.3 5,511,881 + Psyr_4650 0.11 -1.7 5,511,881 + Psyr_4650 0.11 +1.4 5,511,881 + Psyr_4650 0.11 -1.8 5,511,881 + Psyr_4650 0.11 -0.5 5,511,881 + Psyr_4650 0.11 +2.3 5,511,881 + Psyr_4650 0.11 +0.0 5,511,881 + Psyr_4650 0.11 -2.4 5,511,881 + Psyr_4650 0.11 +1.3 5,511,881 + Psyr_4650 0.11 +1.0 5,511,882 - Psyr_4650 0.11 +0.9 5,511,882 - Psyr_4650 0.11 +0.5 5,511,882 - Psyr_4650 0.11 +0.8 5,511,882 - Psyr_4650 0.11 +0.7 5,511,882 - Psyr_4650 0.11 +0.3 5,511,882 - Psyr_4650 0.11 +1.2 5,511,882 - Psyr_4650 0.11 +0.8 5,511,882 - Psyr_4650 0.11 +1.1 5,511,882 - Psyr_4650 0.11 +0.3 5,511,894 + Psyr_4650 0.12 -0.0 5,511,894 + Psyr_4650 0.12 -2.2 5,511,895 - Psyr_4650 0.13 +0.2 5,511,900 + Psyr_4650 0.13 -1.6 5,511,901 - Psyr_4650 0.14 -0.9 5,512,039 + Psyr_4650 0.34 +0.4 5,512,040 - Psyr_4650 0.34 +1.1 5,512,096 + Psyr_4650 0.42 +0.7 5,512,104 + Psyr_4650 0.43 -0.6 5,512,105 - Psyr_4650 0.43 +0.8 5,512,208 + Psyr_4650 0.59 -1.2 5,512,260 + Psyr_4650 0.66 +0.2 5,512,279 - Psyr_4650 0.69 +1.1 5,512,393 - Psyr_4650 0.86 -0.3 5,512,393 - Psyr_4650 0.86 +2.0 5,512,482 + -0.0 5,512,482 + -0.0 5,512,482 + -1.7 5,512,483 - +0.8 5,512,483 - -0.3 5,512,483 - +1.3 5,512,521 + -0.5 5,512,533 + -2.8 5,512,533 + +0.1 5,512,533 + +0.3 5,512,534 - +1.1 5,512,534 - -0.8 5,512,689 + +2.2 5,512,915 + +0.7 5,512,947 + +0.3 5,512,948 - -0.3 5,513,022 + +1.2 5,513,022 + -1.5 5,513,022 + +1.2 5,513,023 - +0.3 5,513,045 + -0.5 5,513,045 + -0.6 5,513,045 + -0.8 5,513,045 + +1.5 5,513,046 - +0.6 5,513,046 - -0.3 5,513,046 - -0.3 5,513,046 - +0.4 5,513,046 - -1.1 5,513,046 - +0.7 5,513,103 - -2.4 5,513,113 + -2.5 5,513,114 - -0.4 5,513,114 - +1.8 5,513,114 - -0.6 5,513,114 - -0.8 5,513,115 + +0.2 5,513,115 + -0.2 5,513,115 + +0.8 5,513,115 + -0.4 5,513,115 + -0.3 5,513,115 + -3.1 5,513,115 + -1.3 5,513,115 + +1.1 5,513,116 - -1.0 5,513,116 - +1.9 5,513,116 - -1.0 5,513,116 - -0.1 5,513,157 + -0.5 5,513,157 + +0.3 5,513,197 + +0.5 5,513,198 - +0.3 5,513,198 - -0.6 5,513,198 - -1.6 5,513,204 - +0.5 5,513,253 + +1.5 5,513,253 + -0.4 5,513,253 + -0.1 5,513,254 - +1.5 5,513,254 - -0.0 5,513,254 - +0.6 5,513,254 - -0.9 5,513,274 + -0.0 5,513,274 + +0.3 5,513,275 - -0.8 5,513,310 + +1.2 5,513,311 - +0.6 5,513,407 - -0.1 5,513,419 + +1.7 5,513,420 - -0.7 5,513,485 + Psyr_4651 0.13 -2.0 5,513,485 + Psyr_4651 0.13 +0.1 5,513,486 - Psyr_4651 0.13 +0.9 5,513,486 - Psyr_4651 0.13 +1.2
Or see this region's nucleotide sequence