Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4512

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
5,375,055	+				+1.7
5,375,055	+				-0.8
5,375,056	-				+1.2
5,375,056	-				+0.9
5,375,066	+				+0.7
5,375,077	+		Psyr_4511	0.11	+1.0
5,375,077	+		Psyr_4511	0.11	+1.5
5,375,077	+		Psyr_4511	0.11	+0.3
5,375,077	+		Psyr_4511	0.11	+0.8
5,375,077	+		Psyr_4511	0.11	+1.6
5,375,077	+		Psyr_4511	0.11	+1.6
5,375,077	+		Psyr_4511	0.11	+1.1
5,375,077	+		Psyr_4511	0.11	+1.2
5,375,078	-		Psyr_4511	0.11	+0.8
5,375,078	-		Psyr_4511	0.11	-0.3
5,375,222	+		Psyr_4511	0.24	+0.6
5,375,251	+		Psyr_4511	0.27	-0.7
5,375,254	-		Psyr_4511	0.27	+1.5
5,375,255	+		Psyr_4511	0.27	-0.3
5,375,255	+		Psyr_4511	0.27	-2.8
5,375,256	-		Psyr_4511	0.27	+0.2
5,375,291	+		Psyr_4511	0.30	-0.7
5,375,300	+		Psyr_4511	0.31	+2.1
5,375,363	+		Psyr_4511	0.37	-1.3
5,375,376	-		Psyr_4511	0.38	-0.7
5,375,436	+		Psyr_4511	0.44	+3.7
5,375,437	-		Psyr_4511	0.44	-2.0
5,375,440	-		Psyr_4511	0.44	+1.3
5,375,539	-		Psyr_4511	0.53	+0.6
5,375,588	+		Psyr_4511	0.58	-0.5
5,375,598	+		Psyr_4511	0.59	-0.5
5,375,713	+		Psyr_4511	0.69	+0.5
5,375,724	+		Psyr_4511	0.70	+0.6
5,375,817	+		Psyr_4511	0.79	-1.7
5,375,819	+		Psyr_4511	0.79	-0.4
5,375,861	-		Psyr_4511	0.83	+1.1
5,375,921	-		Psyr_4511	0.88	+1.2
5,375,921	-		Psyr_4511	0.88	-1.3
5,375,932	+		Psyr_4511	0.89	+0.3
5,375,932	+		Psyr_4511	0.89	-0.2
5,375,932	+		Psyr_4511	0.89	+0.3
5,375,932	+		Psyr_4511	0.89	-1.3
5,375,932	+		Psyr_4511	0.89	-0.4
5,375,932	+		Psyr_4511	0.89	+0.7
5,375,951	-				-1.2
5,376,024	+				+0.4
5,376,024	+				+0.4
5,376,024	+				+0.9
5,376,024	+				-0.6
5,376,025	-				-2.1
5,376,025	-				+0.3
5,376,025	-				+0.4
5,376,180	+		Psyr_4512	0.30	-2.4
5,376,226	-		Psyr_4512	0.38	-0.1
5,376,260	+		Psyr_4512	0.43	-0.5
5,376,261	-		Psyr_4512	0.43	-2.7
5,376,261	-		Psyr_4512	0.43	-0.7
5,376,261	-		Psyr_4512	0.43	-2.1
5,376,261	-		Psyr_4512	0.43	+0.5
5,376,261	-		Psyr_4512	0.43	-3.9
5,376,261	-		Psyr_4512	0.43	-0.8
5,376,296	-		Psyr_4512	0.49	-1.3
5,376,328	-		Psyr_4512	0.55	-0.8
5,376,328	-		Psyr_4512	0.55	-2.7
5,376,342	+		Psyr_4512	0.57	-2.4
5,376,343	-		Psyr_4512	0.57	-2.0
5,376,343	-		Psyr_4512	0.57	+1.5
5,376,357	+		Psyr_4512	0.60	-3.0
5,376,366	+		Psyr_4512	0.61	-2.1
5,376,366	+		Psyr_4512	0.61	-0.9
5,376,389	+		Psyr_4512	0.65	-1.1
5,376,446	+		Psyr_4512	0.75	-1.5
5,376,475	+		Psyr_4512	0.80	+1.5
5,376,475	+		Psyr_4512	0.80	-2.5
5,376,475	+		Psyr_4512	0.80	-1.8
5,376,475	+		Psyr_4512	0.80	-2.5
5,376,475	+		Psyr_4512	0.80	-2.8
5,376,475	+		Psyr_4512	0.80	-1.1
5,376,475	+		Psyr_4512	0.80	-1.7
5,376,476	-		Psyr_4512	0.80	+0.3
5,376,476	-		Psyr_4512	0.80	-1.7
5,376,583	-				-0.1
5,376,583	-				-2.3
5,376,636	+				+0.1
5,376,687	+				+0.3
5,376,687	+				+0.8
5,376,719	+		Psyr_4513	0.13	+0.5
5,376,719	+		Psyr_4513	0.13	-2.1
5,376,731	+		Psyr_4513	0.16	-2.1
5,376,731	+		Psyr_4513	0.16	-1.0
5,376,731	+		Psyr_4513	0.16	+1.4
5,376,732	-		Psyr_4513	0.16	-0.8
5,376,732	-		Psyr_4513	0.16	+0.3
5,376,732	-		Psyr_4513	0.16	-0.3
5,376,732	-		Psyr_4513	0.16	+2.4
5,376,732	-		Psyr_4513	0.16	-0.6
5,376,732	-		Psyr_4513	0.16	+0.6
5,376,750	+				+0.5
5,376,750	+		Psyr_4513	0.21	-0.7
5,376,750	+		Psyr_4513	0.21	+0.2
5,376,757	-		Psyr_4513	0.22	-0.0
5,376,757	-		Psyr_4513	0.22	+1.5
5,376,757	-		Psyr_4513	0.22	+1.1
5,376,757	-		Psyr_4513	0.22	+0.6
5,376,757	-		Psyr_4513	0.22	-1.3
5,376,759	+		Psyr_4513	0.23	+0.0
5,376,759	+		Psyr_4513	0.23	-0.1
5,376,759	+		Psyr_4513	0.23	+0.1
5,376,759	+		Psyr_4513	0.23	+0.5
5,376,759	+		Psyr_4513	0.23	-0.6
5,376,760	-		Psyr_4513	0.23	+0.2
5,376,760	-		Psyr_4513	0.23	+0.2
5,376,760	-		Psyr_4513	0.23	+1.6
5,376,760	-		Psyr_4513	0.23	-0.1
5,376,953	+		Psyr_4513	0.70	-3.3
5,376,953	+		Psyr_4513	0.70	+1.1
5,376,954	-		Psyr_4513	0.70	-1.3
5,376,954	-		Psyr_4513	0.70	-1.2
5,376,954	-		Psyr_4513	0.70	+1.5
5,376,954	-		Psyr_4513	0.70	-1.8
5,376,954	-		Psyr_4513	0.70	+1.4
5,376,954	-		Psyr_4513	0.70	-2.0
5,377,064	+				-1.0
5,377,064	+				+2.8
5,377,064	+				-0.1
5,377,064	+				+0.5
5,377,065	-				-0.4
5,377,065	-				-0.1
5,377,065	-				+2.2
5,377,105	+				+0.5
5,377,105	+				+0.0
5,377,125	+				+0.5
5,377,126	-				+0.8
5,377,223	+				+1.0
5,377,223	+				+0.2
5,377,223	+				+1.6
5,377,223	+				+0.8
5,377,224	-				+1.2
5,377,224	-				-0.1
5,377,224	-				-0.5
5,377,224	-				+0.1
5,377,224	-				+0.3
5,377,224	-				+0.8
5,377,224	-				+0.2
5,377,226	+				+1.6
5,377,226	+				+0.9
5,377,226	+				+1.1
5,377,227	-				+0.8
5,377,227	-				+0.9
5,377,227	-				-0.7
5,377,227	-				-0.4
5,377,285	+				-1.4
5,377,285	+				-0.5
5,377,286	-				+0.7
5,377,286	-				+0.0
5,377,286	-				+1.5
5,377,286	-				+1.0
5,377,286	-				-1.0
5,377,453	+				+0.6
5,377,490	+				-0.4
5,377,491	-				-0.5
5,377,491	-				+0.6
5,377,502	+				+0.4
5,377,502	+				-0.7
5,377,503	-				+1.5
5,377,527	+				+1.2
5,377,527	+				+0.6
5,377,531	+				-1.6
5,377,531	+				-2.8
5,377,531	+				-0.6
5,377,532	-				+1.0
5,377,532	-				+0.7
5,377,536	-				-0.1
5,377,540	-				+1.3
5,377,547	+				+1.1
5,377,548	-				+0.3
5,377,563	+				-0.5
5,377,563	+				+0.4
5,377,563	+				+1.2
5,377,564	-				+0.8
5,377,564	-				+0.4
5,377,564	-				-1.0
5,377,564	-				+1.0
5,377,564	-				+0.1
5,377,572	+				-0.7
5,377,580	+				+0.0
5,377,580	+				+0.5