Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4446

Experiment: epiphytic; Green bean

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_4444 and Psyr_4445 overlap by 4 nucleotidesPsyr_4445 and Psyr_4446 are separated by 308 nucleotidesPsyr_4446 and Psyr_4447 are separated by 167 nucleotidesPsyr_4447 and Psyr_4448 are separated by 0 nucleotides Psyr_4444: Psyr_4444 - Protein of unknown function DUF6, at 5,311,105 to 5,311,986 _4444 Psyr_4445: Psyr_4445 - conserved hypothetical protein, at 5,311,983 to 5,312,216 _4445 Psyr_4446: Psyr_4446 - SmpA/OmlA, at 5,312,525 to 5,312,863 _4446 Psyr_4447: Psyr_4447 - hypothetical protein, at 5,313,031 to 5,313,366 _4447 Psyr_4448: Psyr_4448 - Ferritin and Dps, at 5,313,367 to 5,313,909 _4448 Position (kb) 5312 5313Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5311.589 kb on - strand, within Psyr_4444at 5311.597 kb on + strand, within Psyr_4444at 5311.597 kb on + strand, within Psyr_4444at 5311.597 kb on + strand, within Psyr_4444at 5311.597 kb on + strand, within Psyr_4444at 5311.597 kb on + strand, within Psyr_4444at 5311.598 kb on - strand, within Psyr_4444at 5311.598 kb on - strand, within Psyr_4444at 5311.598 kb on - strand, within Psyr_4444at 5311.598 kb on - strand, within Psyr_4444at 5311.598 kb on - strand, within Psyr_4444at 5311.598 kb on - strand, within Psyr_4444at 5311.600 kb on - strand, within Psyr_4444at 5311.600 kb on - strand, within Psyr_4444at 5311.651 kb on + strand, within Psyr_4444at 5311.651 kb on + strand, within Psyr_4444at 5311.651 kb on + strand, within Psyr_4444at 5311.651 kb on + strand, within Psyr_4444at 5311.652 kb on - strand, within Psyr_4444at 5311.656 kb on - strand, within Psyr_4444at 5311.656 kb on - strand, within Psyr_4444at 5311.747 kb on + strand, within Psyr_4444at 5311.747 kb on + strand, within Psyr_4444at 5311.747 kb on + strand, within Psyr_4444at 5311.747 kb on + strand, within Psyr_4444at 5311.748 kb on - strand, within Psyr_4444at 5311.748 kb on - strand, within Psyr_4444at 5311.748 kb on - strand, within Psyr_4444at 5311.748 kb on - strand, within Psyr_4444at 5311.748 kb on - strand, within Psyr_4444at 5311.748 kb on - strand, within Psyr_4444at 5311.748 kb on - strand, within Psyr_4444at 5311.748 kb on - strand, within Psyr_4444at 5311.901 kb on - strandat 5312.091 kb on + strand, within Psyr_4445at 5312.091 kb on + strand, within Psyr_4445at 5312.091 kb on + strand, within Psyr_4445at 5312.091 kb on + strand, within Psyr_4445at 5312.091 kb on + strand, within Psyr_4445at 5312.092 kb on - strand, within Psyr_4445at 5312.092 kb on - strand, within Psyr_4445at 5312.092 kb on - strand, within Psyr_4445at 5312.092 kb on - strand, within Psyr_4445at 5312.132 kb on + strand, within Psyr_4445at 5312.160 kb on + strand, within Psyr_4445at 5312.160 kb on + strand, within Psyr_4445at 5312.161 kb on - strand, within Psyr_4445at 5312.186 kb on - strand, within Psyr_4445at 5312.197 kb on + strandat 5312.197 kb on + strandat 5312.197 kb on + strandat 5312.197 kb on + strandat 5312.198 kb on - strandat 5312.198 kb on - strandat 5312.198 kb on - strandat 5312.260 kb on + strandat 5312.261 kb on - strandat 5312.261 kb on - strandat 5312.261 kb on - strandat 5312.355 kb on - strandat 5312.428 kb on + strandat 5312.528 kb on + strandat 5312.528 kb on + strandat 5312.528 kb on + strandat 5312.529 kb on - strandat 5312.529 kb on - strandat 5312.557 kb on - strandat 5312.609 kb on + strand, within Psyr_4446at 5312.609 kb on + strand, within Psyr_4446at 5312.609 kb on + strand, within Psyr_4446at 5312.609 kb on + strand, within Psyr_4446at 5312.609 kb on + strand, within Psyr_4446at 5312.609 kb on + strand, within Psyr_4446at 5312.609 kb on + strand, within Psyr_4446at 5312.609 kb on + strand, within Psyr_4446at 5312.610 kb on - strand, within Psyr_4446at 5312.610 kb on - strand, within Psyr_4446at 5312.618 kb on + strand, within Psyr_4446at 5312.618 kb on + strand, within Psyr_4446at 5312.619 kb on - strand, within Psyr_4446at 5312.619 kb on - strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.775 kb on - strand, within Psyr_4446at 5312.775 kb on - strand, within Psyr_4446at 5312.775 kb on - strand, within Psyr_4446at 5312.861 kb on + strandat 5312.861 kb on + strandat 5312.861 kb on + strandat 5312.861 kb on + strandat 5312.862 kb on - strandat 5312.862 kb on - strandat 5313.164 kb on + strand, within Psyr_4447at 5313.164 kb on + strand, within Psyr_4447at 5313.165 kb on - strand, within Psyr_4447at 5313.177 kb on + strand, within Psyr_4447at 5313.225 kb on + strand, within Psyr_4447at 5313.225 kb on + strand, within Psyr_4447at 5313.225 kb on + strand, within Psyr_4447at 5313.226 kb on - strand, within Psyr_4447at 5313.231 kb on + strand, within Psyr_4447at 5313.232 kb on - strand, within Psyr_4447at 5313.232 kb on - strand, within Psyr_4447at 5313.324 kb on + strand, within Psyr_4447at 5313.324 kb on + strand, within Psyr_4447at 5313.324 kb on + strand, within Psyr_4447at 5313.364 kb on + strandat 5313.364 kb on + strandat 5313.365 kb on - strandat 5313.365 kb on - strandat 5313.365 kb on - strandat 5313.365 kb on - strandat 5313.404 kb on + strandat 5313.404 kb on + strandat 5313.404 kb on + strandat 5313.405 kb on - strandat 5313.405 kb on - strandat 5313.405 kb on - strandat 5313.405 kb on - strandat 5313.408 kb on + strandat 5313.408 kb on + strandat 5313.408 kb on + strandat 5313.408 kb on + strandat 5313.408 kb on + strandat 5313.408 kb on + strandat 5313.409 kb on - strandat 5313.409 kb on - strandat 5313.409 kb on - strandat 5313.409 kb on - strandat 5313.409 kb on - strandat 5313.409 kb on - strandat 5313.463 kb on + strand, within Psyr_4448at 5313.464 kb on - strand, within Psyr_4448at 5313.464 kb on - strand, within Psyr_4448at 5313.539 kb on - strand, within Psyr_4448at 5313.550 kb on + strand, within Psyr_4448at 5313.551 kb on - strand, within Psyr_4448at 5313.551 kb on - strand, within Psyr_4448at 5313.551 kb on - strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.648 kb on + strand, within Psyr_4448at 5313.649 kb on - strand, within Psyr_4448at 5313.715 kb on + strand, within Psyr_4448at 5313.715 kb on + strand, within Psyr_4448at 5313.715 kb on + strand, within Psyr_4448at 5313.715 kb on + strand, within Psyr_4448at 5313.716 kb on - strand, within Psyr_4448at 5313.716 kb on - strand, within Psyr_4448at 5313.716 kb on - strand, within Psyr_4448at 5313.716 kb on - strand, within Psyr_4448at 5313.716 kb on - strand, within Psyr_4448at 5313.716 kb on - strand, within Psyr_4448at 5313.749 kb on - strand, within Psyr_4448at 5313.749 kb on - strand, within Psyr_4448at 5313.805 kb on + strand, within Psyr_4448at 5313.805 kb on + strand, within Psyr_4448

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Green bean
remove
5,311,589 - Psyr_4444 0.55 -0.1
5,311,597 + Psyr_4444 0.56 -0.7
5,311,597 + Psyr_4444 0.56 -0.2
5,311,597 + Psyr_4444 0.56 -0.6
5,311,597 + Psyr_4444 0.56 +0.4
5,311,597 + Psyr_4444 0.56 +0.4
5,311,598 - Psyr_4444 0.56 +0.4
5,311,598 - Psyr_4444 0.56 -0.4
5,311,598 - Psyr_4444 0.56 -0.1
5,311,598 - Psyr_4444 0.56 +0.3
5,311,598 - Psyr_4444 0.56 -0.2
5,311,598 - Psyr_4444 0.56 +1.2
5,311,600 - Psyr_4444 0.56 -1.1
5,311,600 - Psyr_4444 0.56 -1.4
5,311,651 + Psyr_4444 0.62 -1.0
5,311,651 + Psyr_4444 0.62 +0.4
5,311,651 + Psyr_4444 0.62 -1.7
5,311,651 + Psyr_4444 0.62 -0.6
5,311,652 - Psyr_4444 0.62 -2.9
5,311,656 - Psyr_4444 0.62 -0.4
5,311,656 - Psyr_4444 0.62 +0.6
5,311,747 + Psyr_4444 0.73 +0.2
5,311,747 + Psyr_4444 0.73 +0.4
5,311,747 + Psyr_4444 0.73 +0.4
5,311,747 + Psyr_4444 0.73 -0.3
5,311,748 - Psyr_4444 0.73 +0.7
5,311,748 - Psyr_4444 0.73 +0.2
5,311,748 - Psyr_4444 0.73 -1.9
5,311,748 - Psyr_4444 0.73 -0.3
5,311,748 - Psyr_4444 0.73 +2.8
5,311,748 - Psyr_4444 0.73 -0.2
5,311,748 - Psyr_4444 0.73 -0.1
5,311,748 - Psyr_4444 0.73 -1.8
5,311,901 - +0.1
5,312,091 + Psyr_4445 0.46 +0.2
5,312,091 + Psyr_4445 0.46 -0.9
5,312,091 + Psyr_4445 0.46 -1.4
5,312,091 + Psyr_4445 0.46 +1.4
5,312,091 + Psyr_4445 0.46 +0.6
5,312,092 - Psyr_4445 0.47 +0.9
5,312,092 - Psyr_4445 0.47 +1.5
5,312,092 - Psyr_4445 0.47 +0.0
5,312,092 - Psyr_4445 0.47 -1.7
5,312,132 + Psyr_4445 0.64 -0.7
5,312,160 + Psyr_4445 0.76 +0.1
5,312,160 + Psyr_4445 0.76 +0.1
5,312,161 - Psyr_4445 0.76 -0.4
5,312,186 - Psyr_4445 0.87 +0.2
5,312,197 + -2.1
5,312,197 + +0.3
5,312,197 + -0.5
5,312,197 + -0.4
5,312,198 - +1.0
5,312,198 - -0.0
5,312,198 - -1.6
5,312,260 + -1.7
5,312,261 - +1.8
5,312,261 - +1.5
5,312,261 - +0.5
5,312,355 - +0.6
5,312,428 + +3.0
5,312,528 + +0.7
5,312,528 + -0.4
5,312,528 + +0.3
5,312,529 - -1.9
5,312,529 - -0.2
5,312,557 - -0.2
5,312,609 + Psyr_4446 0.25 -1.7
5,312,609 + Psyr_4446 0.25 -2.2
5,312,609 + Psyr_4446 0.25 -0.0
5,312,609 + Psyr_4446 0.25 -2.0
5,312,609 + Psyr_4446 0.25 +0.1
5,312,609 + Psyr_4446 0.25 +1.5
5,312,609 + Psyr_4446 0.25 -1.9
5,312,609 + Psyr_4446 0.25 +0.6
5,312,610 - Psyr_4446 0.25 +1.0
5,312,610 - Psyr_4446 0.25 -0.9
5,312,618 + Psyr_4446 0.27 -0.9
5,312,618 + Psyr_4446 0.27 -1.0
5,312,619 - Psyr_4446 0.28 +0.7
5,312,619 - Psyr_4446 0.28 -0.5
5,312,741 + Psyr_4446 0.64 -0.5
5,312,741 + Psyr_4446 0.64 -2.4
5,312,741 + Psyr_4446 0.64 +0.5
5,312,741 + Psyr_4446 0.64 -0.6
5,312,741 + Psyr_4446 0.64 -1.5
5,312,741 + Psyr_4446 0.64 +0.6
5,312,741 + Psyr_4446 0.64 +0.0
5,312,741 + Psyr_4446 0.64 +0.1
5,312,741 + Psyr_4446 0.64 -0.9
5,312,741 + Psyr_4446 0.64 +0.9
5,312,741 + Psyr_4446 0.64 +0.1
5,312,741 + Psyr_4446 0.64 -0.5
5,312,741 + Psyr_4446 0.64 +0.5
5,312,741 + Psyr_4446 0.64 +0.2
5,312,741 + Psyr_4446 0.64 +0.6
5,312,741 + Psyr_4446 0.64 -0.5
5,312,742 - Psyr_4446 0.64 -0.9
5,312,742 - Psyr_4446 0.64 +1.7
5,312,742 - Psyr_4446 0.64 +0.2
5,312,742 - Psyr_4446 0.64 -2.0
5,312,742 - Psyr_4446 0.64 +0.8
5,312,742 - Psyr_4446 0.64 -0.8
5,312,742 - Psyr_4446 0.64 -0.4
5,312,742 - Psyr_4446 0.64 -0.0
5,312,742 - Psyr_4446 0.64 -1.5
5,312,742 - Psyr_4446 0.64 +0.1
5,312,742 - Psyr_4446 0.64 +0.2
5,312,742 - Psyr_4446 0.64 +0.5
5,312,742 - Psyr_4446 0.64 -0.8
5,312,742 - Psyr_4446 0.64 +0.0
5,312,775 - Psyr_4446 0.74 +0.1
5,312,775 - Psyr_4446 0.74 -1.9
5,312,775 - Psyr_4446 0.74 -0.1
5,312,861 + -1.5
5,312,861 + +0.8
5,312,861 + +0.9
5,312,861 + +0.9
5,312,862 - +0.3
5,312,862 - +0.5
5,313,164 + Psyr_4447 0.40 -2.6
5,313,164 + Psyr_4447 0.40 +0.6
5,313,165 - Psyr_4447 0.40 -1.8
5,313,177 + Psyr_4447 0.43 +0.2
5,313,225 + Psyr_4447 0.58 -0.3
5,313,225 + Psyr_4447 0.58 +0.2
5,313,225 + Psyr_4447 0.58 -2.6
5,313,226 - Psyr_4447 0.58 -0.2
5,313,231 + Psyr_4447 0.60 +0.1
5,313,232 - Psyr_4447 0.60 +0.9
5,313,232 - Psyr_4447 0.60 -0.9
5,313,324 + Psyr_4447 0.87 -1.6
5,313,324 + Psyr_4447 0.87 -1.1
5,313,324 + Psyr_4447 0.87 +0.7
5,313,364 + +0.5
5,313,364 + +0.7
5,313,365 - -0.5
5,313,365 - -1.1
5,313,365 - +1.5
5,313,365 - +1.2
5,313,404 + -0.5
5,313,404 + -1.9
5,313,404 + -0.3
5,313,405 - +0.6
5,313,405 - -1.1
5,313,405 - +2.7
5,313,405 - -0.8
5,313,408 + +0.2
5,313,408 + +0.1
5,313,408 + +0.8
5,313,408 + -1.9
5,313,408 + +1.8
5,313,408 + +1.5
5,313,409 - +0.8
5,313,409 - -0.9
5,313,409 - -0.5
5,313,409 - -0.9
5,313,409 - +0.3
5,313,409 - -1.5
5,313,463 + Psyr_4448 0.18 +0.4
5,313,464 - Psyr_4448 0.18 -1.3
5,313,464 - Psyr_4448 0.18 +0.2
5,313,539 - Psyr_4448 0.32 +2.5
5,313,550 + Psyr_4448 0.34 -0.4
5,313,551 - Psyr_4448 0.34 +0.1
5,313,551 - Psyr_4448 0.34 -0.4
5,313,551 - Psyr_4448 0.34 -0.6
5,313,553 + Psyr_4448 0.34 +0.4
5,313,553 + Psyr_4448 0.34 +0.1
5,313,553 + Psyr_4448 0.34 +1.2
5,313,553 + Psyr_4448 0.34 -1.0
5,313,553 + Psyr_4448 0.34 +1.5
5,313,553 + Psyr_4448 0.34 -0.5
5,313,553 + Psyr_4448 0.34 +0.3
5,313,553 + Psyr_4448 0.34 +1.9
5,313,553 + Psyr_4448 0.34 +1.1
5,313,553 + Psyr_4448 0.34 -0.2
5,313,553 + Psyr_4448 0.34 +1.6
5,313,553 + Psyr_4448 0.34 -0.0
5,313,553 + Psyr_4448 0.34 -0.2
5,313,553 + Psyr_4448 0.34 +0.5
5,313,553 + Psyr_4448 0.34 +0.2
5,313,553 + Psyr_4448 0.34 +0.2
5,313,553 + Psyr_4448 0.34 -2.1
5,313,553 + Psyr_4448 0.34 -0.8
5,313,553 + Psyr_4448 0.34 +0.4
5,313,553 + Psyr_4448 0.34 -0.5
5,313,553 + Psyr_4448 0.34 +0.6
5,313,553 + Psyr_4448 0.34 +0.6
5,313,553 + Psyr_4448 0.34 +0.9
5,313,554 - Psyr_4448 0.34 +0.1
5,313,554 - Psyr_4448 0.34 -0.5
5,313,554 - Psyr_4448 0.34 -0.4
5,313,554 - Psyr_4448 0.34 +0.2
5,313,554 - Psyr_4448 0.34 +1.7
5,313,554 - Psyr_4448 0.34 +0.2
5,313,554 - Psyr_4448 0.34 -0.2
5,313,554 - Psyr_4448 0.34 -1.3
5,313,554 - Psyr_4448 0.34 +1.1
5,313,554 - Psyr_4448 0.34 -0.7
5,313,554 - Psyr_4448 0.34 +0.9
5,313,554 - Psyr_4448 0.34 +1.0
5,313,554 - Psyr_4448 0.34 +0.6
5,313,554 - Psyr_4448 0.34 +3.7
5,313,554 - Psyr_4448 0.34 +2.1
5,313,554 - Psyr_4448 0.34 -2.5
5,313,554 - Psyr_4448 0.34 +0.0
5,313,554 - Psyr_4448 0.34 -0.5
5,313,554 - Psyr_4448 0.34 -1.7
5,313,554 - Psyr_4448 0.34 +0.7
5,313,554 - Psyr_4448 0.34 +0.7
5,313,648 + Psyr_4448 0.52 -0.4
5,313,649 - Psyr_4448 0.52 +0.7
5,313,715 + Psyr_4448 0.64 -0.9
5,313,715 + Psyr_4448 0.64 +0.2
5,313,715 + Psyr_4448 0.64 -2.4
5,313,715 + Psyr_4448 0.64 -1.0
5,313,716 - Psyr_4448 0.64 -3.1
5,313,716 - Psyr_4448 0.64 +1.1
5,313,716 - Psyr_4448 0.64 -0.0
5,313,716 - Psyr_4448 0.64 -0.3
5,313,716 - Psyr_4448 0.64 +0.3
5,313,716 - Psyr_4448 0.64 -0.2
5,313,749 - Psyr_4448 0.70 -0.3
5,313,749 - Psyr_4448 0.70 +1.4
5,313,805 + Psyr_4448 0.81 +0.6
5,313,805 + Psyr_4448 0.81 +0.1

Or see this region's nucleotide sequence