Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4382

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
5,237,945	+		Psyr_4381	0.63	-0.0
5,237,945	+		Psyr_4381	0.63	-0.1
5,237,945	+		Psyr_4381	0.63	-0.1
5,237,946	-		Psyr_4381	0.63	-1.6
5,237,963	+		Psyr_4381	0.64	-1.2
5,237,963	+		Psyr_4381	0.64	+0.7
5,237,963	+		Psyr_4381	0.64	-0.1
5,237,963	+		Psyr_4381	0.64	-1.6
5,237,963	+		Psyr_4381	0.64	-2.8
5,237,963	+		Psyr_4381	0.64	+0.8
5,237,963	+		Psyr_4381	0.64	-0.2
5,237,963	+		Psyr_4381	0.64	-0.7
5,237,964	-		Psyr_4381	0.64	+0.2
5,237,964	-		Psyr_4381	0.64	-0.3
5,237,964	-		Psyr_4381	0.64	-0.9
5,237,964	-		Psyr_4381	0.64	+0.1
5,237,964	-		Psyr_4381	0.64	+1.2
5,237,964	-		Psyr_4381	0.64	-0.8
5,237,964	-		Psyr_4381	0.64	-0.7
5,237,964	-		Psyr_4381	0.64	+1.4
5,237,964	-		Psyr_4381	0.64	+1.2
5,237,964	-		Psyr_4381	0.64	-0.4
5,237,964	-		Psyr_4381	0.64	+2.8
5,237,964	-		Psyr_4381	0.64	+2.1
5,238,038	+		Psyr_4381	0.68	-0.2
5,238,038	+		Psyr_4381	0.68	-1.4
5,238,038	+		Psyr_4381	0.68	+1.0
5,238,038	+		Psyr_4381	0.68	-2.4
5,238,038	+		Psyr_4381	0.68	+0.0
5,238,039	-		Psyr_4381	0.68	-1.4
5,238,039	-		Psyr_4381	0.68	+0.9
5,238,039	-		Psyr_4381	0.68	+1.2
5,238,062	+		Psyr_4381	0.69	+2.4
5,238,062	+		Psyr_4381	0.69	+1.0
5,238,062	+		Psyr_4381	0.69	+0.4
5,238,063	-		Psyr_4381	0.69	+2.0
5,238,063	-		Psyr_4381	0.69	+0.8
5,238,137	+		Psyr_4381	0.73	+0.6
5,238,137	+		Psyr_4381	0.73	+0.8
5,238,137	+		Psyr_4381	0.73	+0.1
5,238,137	+		Psyr_4381	0.73	+0.7
5,238,137	+		Psyr_4381	0.73	-0.1
5,238,137	+		Psyr_4381	0.73	-0.7
5,238,137	+		Psyr_4381	0.73	+1.4
5,238,137	+		Psyr_4381	0.73	+1.1
5,238,137	+		Psyr_4381	0.73	-0.0
5,238,137	+		Psyr_4381	0.73	-0.2
5,238,137	+		Psyr_4381	0.73	+0.5
5,238,138	-		Psyr_4381	0.73	+1.1
5,238,138	-		Psyr_4381	0.73	+0.3
5,238,138	-		Psyr_4381	0.73	+0.0
5,238,138	-		Psyr_4381	0.73	-0.1
5,238,138	-		Psyr_4381	0.73	-0.9
5,238,138	-		Psyr_4381	0.73	+0.6
5,238,138	-		Psyr_4381	0.73	+1.1
5,238,138	-		Psyr_4381	0.73	-1.0
5,238,138	-		Psyr_4381	0.73	+2.3
5,238,138	-		Psyr_4381	0.73	-0.7
5,238,138	-		Psyr_4381	0.73	+1.6
5,238,138	-		Psyr_4381	0.73	+1.6
5,238,293	+		Psyr_4381	0.81	+1.2
5,238,294	-		Psyr_4381	0.81	-0.9
5,238,294	-		Psyr_4381	0.81	-1.3
5,238,294	-		Psyr_4381	0.81	+0.4
5,238,294	-		Psyr_4381	0.81	-2.9
5,238,294	-		Psyr_4381	0.81	-0.1
5,238,356	+		Psyr_4381	0.84	+0.7
5,238,356	+		Psyr_4381	0.84	+0.4
5,238,357	-		Psyr_4381	0.84	+0.5
5,238,446	+		Psyr_4381	0.89	-1.4
5,238,447	-		Psyr_4381	0.89	+0.4
5,238,447	-		Psyr_4381	0.89	-0.6
5,238,447	-		Psyr_4381	0.89	+0.3
5,238,519	-				+0.8
5,238,519	-				+0.8
5,238,602	+				+0.5
5,238,602	+				-3.0
5,238,602	+				-0.3
5,238,602	+				-2.6
5,238,602	+				-1.0
5,238,603	-				-1.2
5,238,603	-				+0.5
5,238,603	-				-1.4
5,238,603	-				+0.7
5,238,644	+				-0.2
5,238,679	+				-1.4
5,238,679	+				-1.3
5,238,679	+				-2.9
5,238,680	-				+0.9
5,238,680	-				-1.4
5,238,680	-				-0.7
5,238,680	-				+0.2
5,238,783	+				-1.3
5,238,783	+				-0.7
5,238,784	-				+2.1
5,238,784	-				-2.2
5,238,801	+				+0.8
5,238,801	+				-2.0
5,238,801	+				-1.6
5,238,801	+				-0.5
5,238,801	+				-0.1
5,238,801	+				-0.2
5,238,802	-				-1.8
5,238,802	-				-1.9
5,238,802	-				+0.4
5,238,802	-				+0.1
5,238,825	-				-1.2
5,238,841	+				+0.5
5,238,841	+				-1.4
5,238,841	+				+0.3
5,238,841	+				-1.7
5,238,841	+				-0.5
5,238,842	-				-0.0
5,238,842	-				+0.7
5,238,842	-				+0.4
5,238,842	-				+1.6
5,239,079	+		Psyr_4382	0.15	-2.7
5,239,079	+		Psyr_4382	0.15	-0.9
5,239,079	+		Psyr_4382	0.15	-1.9
5,239,079	+		Psyr_4382	0.15	+2.4
5,239,079	+		Psyr_4382	0.15	+0.8
5,239,079	+		Psyr_4382	0.15	+0.2
5,239,079	+		Psyr_4382	0.15	-0.2
5,239,080	-		Psyr_4382	0.15	+0.7
5,239,080	-		Psyr_4382	0.15	+0.9
5,239,080	-		Psyr_4382	0.15	-1.3
5,239,190	+		Psyr_4382	0.25	-1.2
5,239,230	+		Psyr_4382	0.28	+1.0
5,239,246	+		Psyr_4382	0.30	-2.0
5,239,246	+		Psyr_4382	0.30	-1.2
5,239,246	+		Psyr_4382	0.30	-1.4
5,239,247	-		Psyr_4382	0.30	-3.0
5,239,939	-				-0.5
5,240,026	+				-0.5
5,240,027	-				-0.9
5,240,082	+				-0.6
5,240,082	+				+1.0
5,240,082	+				+0.1
5,240,082	+				+0.4
5,240,083	-				+1.3
5,240,083	-				-0.6
5,240,187	+				-0.5
5,240,187	+				-1.7
5,240,187	+				-0.2
5,240,187	+				+0.7
5,240,187	+				+1.2
5,240,187	+				+0.2
5,240,187	+				+0.9
5,240,188	-				-0.5
5,240,188	-				+1.6
5,240,188	-				+0.6
5,240,188	-				+0.3
5,240,221	+		Psyr_4383	0.13	+0.5
5,240,222	-		Psyr_4383	0.13	-0.5
5,240,222	-		Psyr_4383	0.13	+0.8
5,240,222	-		Psyr_4383	0.13	+0.2
5,240,251	-		Psyr_4383	0.16	+1.2
5,240,251	-		Psyr_4383	0.16	+1.4
5,240,251	-		Psyr_4383	0.16	-0.9
5,240,251	-		Psyr_4383	0.16	-2.3
5,240,251	-		Psyr_4383	0.16	-0.2
5,240,253	+		Psyr_4383	0.17	-0.3
5,240,253	+		Psyr_4383	0.17	-1.2
5,240,254	-		Psyr_4383	0.17	+0.4
5,240,254	-		Psyr_4383	0.17	-0.1
5,240,254	-		Psyr_4383	0.17	-1.7
5,240,266	+		Psyr_4383	0.18	-1.2
5,240,315	-		Psyr_4383	0.23	-3.6
5,240,417	-		Psyr_4383	0.35	+0.8
5,240,426	+		Psyr_4383	0.36	-1.0
5,240,427	-		Psyr_4383	0.36	-0.7
5,240,427	-		Psyr_4383	0.36	+0.0
5,240,427	-		Psyr_4383	0.36	-1.2
5,240,427	-		Psyr_4383	0.36	+0.5
5,240,495	-		Psyr_4383	0.43	+1.3
5,240,545	+		Psyr_4383	0.49	+1.6
5,240,546	-		Psyr_4383	0.49	-0.7
5,240,854	+		Psyr_4383	0.83	-0.3
5,240,854	+		Psyr_4383	0.83	-2.6
5,240,854	+		Psyr_4383	0.83	-0.6
5,240,854	+		Psyr_4383	0.83	+0.5