Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4342 and Psyr_4343 are separated by 296 nucleotides Psyr_4343 and Psyr_4344 are separated by 42 nucleotides Psyr_4344 and Psyr_4345 are separated by 139 nucleotides
Psyr_4342: Psyr_4342 - glutamate-1-semialdehyde 2,1-aminomutase, at 5,195,661 to 5,196,944
_4342
Psyr_4343: Psyr_4343 - Sel1-like repeat protein, at 5,197,241 to 5,197,789
_4343
Psyr_4344: Psyr_4344 - conserved hypothetical protein, at 5,197,832 to 5,198,158
_4344
Psyr_4345: Psyr_4345 - tRNA-i(6)A37 thiotransferase enzyme MiaB, at 5,198,298 to 5,199,626
_4345
Position (kb) 5197
5198 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5196.942 kb on + strand at 5196.942 kb on + strand at 5196.942 kb on + strand at 5196.942 kb on + strand at 5196.942 kb on + strand at 5196.943 kb on - strand at 5196.943 kb on - strand at 5196.943 kb on - strand at 5196.943 kb on - strand at 5196.943 kb on - strand at 5196.943 kb on - strand at 5196.943 kb on - strand at 5197.017 kb on + strand at 5197.017 kb on + strand at 5197.018 kb on - strand at 5197.018 kb on - strand at 5197.018 kb on - strand at 5197.018 kb on - strand at 5197.021 kb on + strand at 5197.021 kb on + strand at 5197.022 kb on - strand at 5197.022 kb on - strand at 5197.022 kb on - strand at 5197.036 kb on + strand at 5197.036 kb on + strand at 5197.036 kb on + strand at 5197.037 kb on - strand at 5197.037 kb on - strand at 5197.037 kb on - strand at 5197.059 kb on + strand at 5197.059 kb on + strand at 5197.060 kb on - strand at 5197.060 kb on - strand at 5197.060 kb on - strand at 5197.060 kb on - strand at 5197.061 kb on + strand at 5197.061 kb on + strand at 5197.061 kb on + strand at 5197.061 kb on + strand at 5197.061 kb on + strand at 5197.061 kb on + strand at 5197.061 kb on + strand at 5197.061 kb on + strand at 5197.061 kb on + strand at 5197.061 kb on + strand at 5197.061 kb on + strand at 5197.061 kb on + strand at 5197.061 kb on + strand at 5197.062 kb on - strand at 5197.062 kb on - strand at 5197.062 kb on - strand at 5197.062 kb on - strand at 5197.062 kb on - strand at 5197.062 kb on - strand at 5197.089 kb on + strand at 5197.151 kb on - strand at 5197.166 kb on + strand at 5197.166 kb on + strand at 5197.166 kb on + strand at 5197.166 kb on + strand at 5197.167 kb on - strand at 5197.167 kb on - strand at 5197.167 kb on - strand at 5197.194 kb on - strand at 5197.228 kb on + strand at 5197.228 kb on + strand at 5197.228 kb on + strand at 5197.228 kb on + strand at 5197.229 kb on - strand at 5197.229 kb on - strand at 5197.266 kb on + strand at 5197.266 kb on + strand at 5197.266 kb on + strand at 5197.266 kb on + strand at 5197.266 kb on + strand at 5197.266 kb on + strand at 5197.267 kb on - strand at 5197.326 kb on + strand, within Psyr_4343 at 5197.327 kb on - strand, within Psyr_4343 at 5197.433 kb on + strand, within Psyr_4343 at 5197.433 kb on + strand, within Psyr_4343 at 5197.434 kb on - strand, within Psyr_4343 at 5197.451 kb on + strand, within Psyr_4343 at 5197.451 kb on + strand, within Psyr_4343 at 5197.451 kb on + strand, within Psyr_4343 at 5197.451 kb on + strand, within Psyr_4343 at 5197.452 kb on - strand, within Psyr_4343 at 5197.452 kb on - strand, within Psyr_4343 at 5197.452 kb on - strand, within Psyr_4343 at 5197.452 kb on - strand, within Psyr_4343 at 5197.454 kb on + strand, within Psyr_4343 at 5197.455 kb on - strand, within Psyr_4343 at 5197.499 kb on + strand, within Psyr_4343 at 5197.500 kb on - strand, within Psyr_4343 at 5197.601 kb on + strand, within Psyr_4343 at 5197.601 kb on + strand, within Psyr_4343 at 5197.602 kb on - strand, within Psyr_4343 at 5197.602 kb on - strand, within Psyr_4343 at 5197.602 kb on - strand, within Psyr_4343 at 5197.602 kb on - strand, within Psyr_4343 at 5197.733 kb on + strand, within Psyr_4343 at 5197.733 kb on + strand, within Psyr_4343 at 5197.733 kb on + strand, within Psyr_4343 at 5197.734 kb on - strand, within Psyr_4343 at 5197.734 kb on - strand, within Psyr_4343 at 5197.734 kb on - strand, within Psyr_4343 at 5197.734 kb on - strand, within Psyr_4343 at 5197.833 kb on + strand at 5197.834 kb on - strand at 5197.834 kb on - strand at 5197.865 kb on + strand, within Psyr_4344 at 5197.865 kb on + strand, within Psyr_4344 at 5197.865 kb on + strand, within Psyr_4344 at 5197.865 kb on + strand, within Psyr_4344 at 5197.865 kb on + strand, within Psyr_4344 at 5197.865 kb on + strand, within Psyr_4344 at 5197.865 kb on + strand, within Psyr_4344 at 5197.865 kb on + strand, within Psyr_4344 at 5197.865 kb on + strand, within Psyr_4344 at 5197.866 kb on - strand, within Psyr_4344 at 5197.866 kb on - strand, within Psyr_4344 at 5197.866 kb on - strand, within Psyr_4344 at 5197.866 kb on - strand, within Psyr_4344 at 5197.866 kb on - strand, within Psyr_4344 at 5197.866 kb on - strand, within Psyr_4344 at 5197.866 kb on - strand, within Psyr_4344 at 5198.076 kb on + strand, within Psyr_4344 at 5198.077 kb on - strand, within Psyr_4344 at 5198.077 kb on - strand, within Psyr_4344 at 5198.091 kb on + strand, within Psyr_4344 at 5198.091 kb on + strand, within Psyr_4344 at 5198.091 kb on + strand, within Psyr_4344 at 5198.091 kb on + strand, within Psyr_4344 at 5198.091 kb on + strand, within Psyr_4344 at 5198.092 kb on - strand, within Psyr_4344 at 5198.092 kb on - strand, within Psyr_4344 at 5198.092 kb on - strand, within Psyr_4344 at 5198.092 kb on - strand, within Psyr_4344 at 5198.092 kb on - strand, within Psyr_4344 at 5198.133 kb on + strand at 5198.133 kb on + strand at 5198.133 kb on + strand at 5198.133 kb on + strand at 5198.133 kb on + strand at 5198.134 kb on - strand at 5198.134 kb on - strand at 5198.200 kb on + strand at 5198.200 kb on + strand at 5198.200 kb on + strand at 5198.201 kb on - strand at 5198.201 kb on - strand at 5198.201 kb on - strand at 5198.202 kb on + strand at 5198.202 kb on + strand at 5198.202 kb on + strand at 5198.202 kb on + strand at 5198.202 kb on + strand at 5198.202 kb on + strand at 5198.202 kb on + strand at 5198.202 kb on + strand at 5198.202 kb on + strand at 5198.202 kb on + strand at 5198.202 kb on + strand at 5198.202 kb on + strand at 5198.202 kb on + strand at 5198.202 kb on + strand at 5198.202 kb on + strand at 5198.202 kb on + strand at 5198.203 kb on - strand at 5198.203 kb on - strand at 5198.203 kb on - strand at 5198.203 kb on - strand at 5198.203 kb on - strand at 5198.203 kb on - strand at 5198.203 kb on - strand at 5198.203 kb on - strand at 5198.260 kb on + strand at 5198.260 kb on + strand at 5198.260 kb on + strand at 5198.261 kb on - strand at 5198.261 kb on - strand at 5198.261 kb on - strand at 5198.261 kb on - strand at 5198.261 kb on - strand at 5198.262 kb on + strand at 5198.262 kb on + strand at 5198.262 kb on + strand at 5198.262 kb on + strand at 5198.262 kb on + strand at 5198.262 kb on + strand at 5198.262 kb on + strand at 5198.262 kb on + strand at 5198.263 kb on - strand at 5198.263 kb on - strand at 5198.263 kb on - strand at 5198.263 kb on - strand at 5198.263 kb on - strand at 5198.263 kb on - strand at 5198.263 kb on - strand at 5198.313 kb on + strand at 5198.314 kb on - strand at 5198.314 kb on - strand at 5198.314 kb on - strand at 5198.314 kb on - strand at 5198.314 kb on - strand at 5198.346 kb on + strand at 5198.438 kb on + strand, within Psyr_4345 at 5198.439 kb on - strand, within Psyr_4345 at 5198.589 kb on + strand, within Psyr_4345 at 5198.589 kb on + strand, within Psyr_4345 at 5198.589 kb on + strand, within Psyr_4345 at 5198.589 kb on + strand, within Psyr_4345 at 5198.590 kb on - strand, within Psyr_4345 at 5198.590 kb on - strand, within Psyr_4345 at 5198.590 kb on - strand, within Psyr_4345 at 5198.590 kb on - strand, within Psyr_4345 at 5198.590 kb on - strand, within Psyr_4345 at 5198.745 kb on + strand, within Psyr_4345 at 5198.745 kb on + strand, within Psyr_4345 at 5198.745 kb on + strand, within Psyr_4345 at 5198.745 kb on + strand, within Psyr_4345 at 5198.745 kb on + strand, within Psyr_4345 at 5198.745 kb on + strand, within Psyr_4345 at 5198.745 kb on + strand, within Psyr_4345 at 5198.745 kb on + strand, within Psyr_4345 at 5198.745 kb on + strand, within Psyr_4345 at 5198.745 kb on + strand, within Psyr_4345 at 5198.745 kb on + strand, within Psyr_4345 at 5198.745 kb on + strand, within Psyr_4345 at 5198.745 kb on + strand, within Psyr_4345 at 5198.745 kb on + strand, within Psyr_4345 at 5198.745 kb on + strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.746 kb on - strand, within Psyr_4345 at 5198.775 kb on + strand, within Psyr_4345 at 5198.776 kb on - strand, within Psyr_4345 at 5198.776 kb on - strand, within Psyr_4345
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 5,196,942 + +0.4 5,196,942 + -0.2 5,196,942 + +0.4 5,196,942 + -0.6 5,196,942 + -1.3 5,196,943 - +0.5 5,196,943 - -1.6 5,196,943 - +1.0 5,196,943 - +1.0 5,196,943 - +3.8 5,196,943 - -0.3 5,196,943 - +0.9 5,197,017 + -0.6 5,197,017 + -1.7 5,197,018 - -0.2 5,197,018 - -0.9 5,197,018 - -0.3 5,197,018 - +0.7 5,197,021 + +0.9 5,197,021 + -0.4 5,197,022 - +1.3 5,197,022 - -0.6 5,197,022 - +0.5 5,197,036 + +0.4 5,197,036 + -1.0 5,197,036 + +1.1 5,197,037 - +2.0 5,197,037 - +0.9 5,197,037 - -0.9 5,197,059 + -1.4 5,197,059 + -0.0 5,197,060 - +1.5 5,197,060 - -1.2 5,197,060 - -2.3 5,197,060 - -1.7 5,197,061 + +0.1 5,197,061 + -1.9 5,197,061 + -0.2 5,197,061 + -1.1 5,197,061 + -2.4 5,197,061 + +1.1 5,197,061 + +0.7 5,197,061 + -0.9 5,197,061 + -0.4 5,197,061 + +0.9 5,197,061 + +0.3 5,197,061 + +2.2 5,197,061 + -0.6 5,197,062 - -0.9 5,197,062 - +0.1 5,197,062 - -2.9 5,197,062 - -1.2 5,197,062 - -1.9 5,197,062 - -1.3 5,197,089 + -0.4 5,197,151 - +0.5 5,197,166 + +1.5 5,197,166 + +0.0 5,197,166 + +0.2 5,197,166 + -1.1 5,197,167 - +0.3 5,197,167 - -0.3 5,197,167 - -3.0 5,197,194 - +0.2 5,197,228 + +0.1 5,197,228 + +0.7 5,197,228 + -1.9 5,197,228 + +0.0 5,197,229 - +0.9 5,197,229 - -1.5 5,197,266 + -2.2 5,197,266 + +1.0 5,197,266 + -1.9 5,197,266 + -0.6 5,197,266 + -3.2 5,197,266 + -0.5 5,197,267 - +0.4 5,197,326 + Psyr_4343 0.15 +0.2 5,197,327 - Psyr_4343 0.16 -1.2 5,197,433 + Psyr_4343 0.35 -0.6 5,197,433 + Psyr_4343 0.35 +0.2 5,197,434 - Psyr_4343 0.35 -2.3 5,197,451 + Psyr_4343 0.38 -0.7 5,197,451 + Psyr_4343 0.38 -2.8 5,197,451 + Psyr_4343 0.38 -1.1 5,197,451 + Psyr_4343 0.38 +1.1 5,197,452 - Psyr_4343 0.38 -1.3 5,197,452 - Psyr_4343 0.38 -2.9 5,197,452 - Psyr_4343 0.38 +1.1 5,197,452 - Psyr_4343 0.38 -1.6 5,197,454 + Psyr_4343 0.39 -0.9 5,197,455 - Psyr_4343 0.39 -0.0 5,197,499 + Psyr_4343 0.47 -0.9 5,197,500 - Psyr_4343 0.47 -0.6 5,197,601 + Psyr_4343 0.66 -1.2 5,197,601 + Psyr_4343 0.66 -1.6 5,197,602 - Psyr_4343 0.66 +0.4 5,197,602 - Psyr_4343 0.66 -2.3 5,197,602 - Psyr_4343 0.66 -1.8 5,197,602 - Psyr_4343 0.66 -1.4 5,197,733 + Psyr_4343 0.90 -0.6 5,197,733 + Psyr_4343 0.90 +3.1 5,197,733 + Psyr_4343 0.90 -1.3 5,197,734 - Psyr_4343 0.90 -1.4 5,197,734 - Psyr_4343 0.90 +0.4 5,197,734 - Psyr_4343 0.90 -0.7 5,197,734 - Psyr_4343 0.90 +0.8 5,197,833 + -1.4 5,197,834 - +0.3 5,197,834 - -1.2 5,197,865 + Psyr_4344 0.10 +1.3 5,197,865 + Psyr_4344 0.10 -1.2 5,197,865 + Psyr_4344 0.10 +0.6 5,197,865 + Psyr_4344 0.10 +0.5 5,197,865 + Psyr_4344 0.10 -0.8 5,197,865 + Psyr_4344 0.10 -2.5 5,197,865 + Psyr_4344 0.10 -0.1 5,197,865 + Psyr_4344 0.10 -1.3 5,197,865 + Psyr_4344 0.10 -0.9 5,197,866 - Psyr_4344 0.10 -0.4 5,197,866 - Psyr_4344 0.10 +0.9 5,197,866 - Psyr_4344 0.10 -2.5 5,197,866 - Psyr_4344 0.10 +0.2 5,197,866 - Psyr_4344 0.10 +0.3 5,197,866 - Psyr_4344 0.10 -0.2 5,197,866 - Psyr_4344 0.10 +1.3 5,198,076 + Psyr_4344 0.75 -1.4 5,198,077 - Psyr_4344 0.75 +1.2 5,198,077 - Psyr_4344 0.75 +1.9 5,198,091 + Psyr_4344 0.79 -1.4 5,198,091 + Psyr_4344 0.79 +1.1 5,198,091 + Psyr_4344 0.79 -1.2 5,198,091 + Psyr_4344 0.79 +1.1 5,198,091 + Psyr_4344 0.79 +1.0 5,198,092 - Psyr_4344 0.80 -0.2 5,198,092 - Psyr_4344 0.80 +0.6 5,198,092 - Psyr_4344 0.80 -2.7 5,198,092 - Psyr_4344 0.80 -0.5 5,198,092 - Psyr_4344 0.80 -0.9 5,198,133 + -0.7 5,198,133 + +1.4 5,198,133 + -1.9 5,198,133 + -0.8 5,198,133 + +1.2 5,198,134 - +1.2 5,198,134 - -1.4 5,198,200 + +0.7 5,198,200 + +1.5 5,198,200 + -0.1 5,198,201 - +0.7 5,198,201 - +0.1 5,198,201 - +1.7 5,198,202 + +0.9 5,198,202 + +0.4 5,198,202 + -0.5 5,198,202 + -0.5 5,198,202 + +0.9 5,198,202 + -0.1 5,198,202 + +0.2 5,198,202 + -0.5 5,198,202 + +0.5 5,198,202 + -0.4 5,198,202 + +1.3 5,198,202 + +0.9 5,198,202 + +0.2 5,198,202 + -0.0 5,198,202 + +0.0 5,198,202 + -0.3 5,198,203 - -0.2 5,198,203 - -1.7 5,198,203 - -2.0 5,198,203 - -0.9 5,198,203 - +1.3 5,198,203 - -0.1 5,198,203 - -0.8 5,198,203 - +0.8 5,198,260 + -0.1 5,198,260 + +0.7 5,198,260 + +0.3 5,198,261 - -0.3 5,198,261 - -1.2 5,198,261 - +1.0 5,198,261 - +0.9 5,198,261 - -1.7 5,198,262 + -0.4 5,198,262 + +1.0 5,198,262 + +0.2 5,198,262 + +1.4 5,198,262 + -0.3 5,198,262 + -0.9 5,198,262 + -0.1 5,198,262 + +0.5 5,198,263 - -0.7 5,198,263 - +1.3 5,198,263 - -2.5 5,198,263 - +1.2 5,198,263 - +0.2 5,198,263 - -1.6 5,198,263 - +1.7 5,198,313 + -2.4 5,198,314 - +0.6 5,198,314 - +0.7 5,198,314 - +0.1 5,198,314 - -3.6 5,198,314 - +1.5 5,198,346 + -2.3 5,198,438 + Psyr_4345 0.11 -2.2 5,198,439 - Psyr_4345 0.11 -1.2 5,198,589 + Psyr_4345 0.22 -0.5 5,198,589 + Psyr_4345 0.22 -0.3 5,198,589 + Psyr_4345 0.22 -1.3 5,198,589 + Psyr_4345 0.22 -0.1 5,198,590 - Psyr_4345 0.22 -1.4 5,198,590 - Psyr_4345 0.22 +0.6 5,198,590 - Psyr_4345 0.22 +1.4 5,198,590 - Psyr_4345 0.22 -1.7 5,198,590 - Psyr_4345 0.22 +0.2 5,198,745 + Psyr_4345 0.34 -1.2 5,198,745 + Psyr_4345 0.34 -0.6 5,198,745 + Psyr_4345 0.34 -0.4 5,198,745 + Psyr_4345 0.34 +0.9 5,198,745 + Psyr_4345 0.34 +0.3 5,198,745 + Psyr_4345 0.34 -0.4 5,198,745 + Psyr_4345 0.34 -3.0 5,198,745 + Psyr_4345 0.34 +0.1 5,198,745 + Psyr_4345 0.34 +1.6 5,198,745 + Psyr_4345 0.34 -1.1 5,198,745 + Psyr_4345 0.34 -2.4 5,198,745 + Psyr_4345 0.34 +1.0 5,198,745 + Psyr_4345 0.34 -2.8 5,198,745 + Psyr_4345 0.34 -2.2 5,198,745 + Psyr_4345 0.34 +0.2 5,198,746 - Psyr_4345 0.34 +0.8 5,198,746 - Psyr_4345 0.34 +0.5 5,198,746 - Psyr_4345 0.34 +2.1 5,198,746 - Psyr_4345 0.34 -0.8 5,198,746 - Psyr_4345 0.34 -0.6 5,198,746 - Psyr_4345 0.34 +0.1 5,198,746 - Psyr_4345 0.34 +0.3 5,198,746 - Psyr_4345 0.34 +0.2 5,198,746 - Psyr_4345 0.34 -1.6 5,198,746 - Psyr_4345 0.34 +0.8 5,198,746 - Psyr_4345 0.34 -0.4 5,198,746 - Psyr_4345 0.34 -1.8 5,198,746 - Psyr_4345 0.34 -0.1 5,198,746 - Psyr_4345 0.34 +0.1 5,198,746 - Psyr_4345 0.34 +1.3 5,198,746 - Psyr_4345 0.34 +0.4 5,198,775 + Psyr_4345 0.36 -2.2 5,198,776 - Psyr_4345 0.36 -0.9 5,198,776 - Psyr_4345 0.36 +1.4
Or see this region's nucleotide sequence