Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4326

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
5,177,903	+		Psyr_4325	0.41	+0.2
5,177,903	+		Psyr_4325	0.41	+0.1
5,177,903	+		Psyr_4325	0.41	-0.2
5,177,903	+		Psyr_4325	0.41	-0.5
5,177,903	+		Psyr_4325	0.41	+1.0
5,177,903	+		Psyr_4325	0.41	+1.2
5,177,903	+		Psyr_4325	0.41	+2.1
5,177,903	+		Psyr_4325	0.41	+0.7
5,177,903	+		Psyr_4325	0.41	-2.7
5,177,903	+		Psyr_4325	0.41	+0.8
5,177,903	+		Psyr_4325	0.41	-1.9
5,177,903	+		Psyr_4325	0.41	+0.4
5,177,903	+		Psyr_4325	0.41	-0.8
5,177,904	-		Psyr_4325	0.42	+1.5
5,177,904	-		Psyr_4325	0.42	-0.2
5,177,904	-		Psyr_4325	0.42	-0.5
5,177,904	-		Psyr_4325	0.42	+0.2
5,177,904	-		Psyr_4325	0.42	-0.1
5,177,904	-		Psyr_4325	0.42	+0.0
5,177,904	-		Psyr_4325	0.42	+0.4
5,177,904	-		Psyr_4325	0.42	+0.3
5,177,904	-		Psyr_4325	0.42	+1.2
5,177,904	-		Psyr_4325	0.42	-0.6
5,177,904	-		Psyr_4325	0.42	-0.5
5,177,904	-		Psyr_4325	0.42	-1.4
5,177,904	-		Psyr_4325	0.42	-1.1
5,177,904	-		Psyr_4325	0.42	-0.3
5,177,975	+		Psyr_4325	0.47	-2.0
5,177,975	+		Psyr_4325	0.47	+0.8
5,177,976	-		Psyr_4325	0.47	+2.2
5,178,019	+		Psyr_4325	0.50	+0.7
5,178,019	+		Psyr_4325	0.50	-0.0
5,178,019	+		Psyr_4325	0.50	-1.9
5,178,019	+		Psyr_4325	0.50	-1.0
5,178,019	+		Psyr_4325	0.50	-1.7
5,178,020	-		Psyr_4325	0.50	+0.6
5,178,020	-		Psyr_4325	0.50	-0.5
5,178,057	+		Psyr_4325	0.53	+1.1
5,178,058	-		Psyr_4325	0.53	+0.4
5,178,058	-		Psyr_4325	0.53	+0.9
5,178,128	+		Psyr_4325	0.58	-3.2
5,178,129	-		Psyr_4325	0.58	-0.4
5,178,129	-		Psyr_4325	0.58	-1.9
5,178,129	-		Psyr_4325	0.58	+0.6
5,178,163	+		Psyr_4325	0.61	-0.4
5,178,163	+		Psyr_4325	0.61	-1.5
5,178,163	+		Psyr_4325	0.61	+1.8
5,178,163	+		Psyr_4325	0.61	-2.3
5,178,164	-		Psyr_4325	0.61	+0.8
5,178,164	-		Psyr_4325	0.61	+1.3
5,178,229	+		Psyr_4325	0.66	+1.9
5,178,229	+		Psyr_4325	0.66	+1.3
5,178,229	+		Psyr_4325	0.66	+1.5
5,178,230	-		Psyr_4325	0.66	-0.5
5,178,230	-		Psyr_4325	0.66	+3.0
5,178,230	-		Psyr_4325	0.66	+0.2
5,178,230	-		Psyr_4325	0.66	+1.0
5,178,230	-		Psyr_4325	0.66	-0.2
5,178,230	-		Psyr_4325	0.66	-1.6
5,178,230	-		Psyr_4325	0.66	+0.2
5,178,230	-		Psyr_4325	0.66	+0.0
5,178,277	+		Psyr_4325	0.69	-0.2
5,178,277	+		Psyr_4325	0.69	+0.6
5,178,277	+		Psyr_4325	0.69	-0.6
5,178,278	-		Psyr_4325	0.69	-2.0
5,178,278	-		Psyr_4325	0.69	+0.3
5,178,278	-		Psyr_4325	0.69	-1.1
5,178,278	-		Psyr_4325	0.69	-0.1
5,178,278	-		Psyr_4325	0.69	-0.2
5,178,279	+		Psyr_4325	0.70	+0.1
5,178,279	+		Psyr_4325	0.70	-0.2
5,178,280	-		Psyr_4325	0.70	+0.4
5,178,280	-		Psyr_4325	0.70	+1.2
5,178,390	+		Psyr_4325	0.78	-0.1
5,178,390	+		Psyr_4325	0.78	+0.1
5,178,390	+		Psyr_4325	0.78	+1.7
5,178,394	+		Psyr_4325	0.78	+0.8
5,178,394	+		Psyr_4325	0.78	-2.9
5,178,394	+		Psyr_4325	0.78	-0.6
5,178,394	+		Psyr_4325	0.78	-2.3
5,178,394	+		Psyr_4325	0.78	+0.7
5,178,394	+		Psyr_4325	0.78	+0.7
5,178,395	-		Psyr_4325	0.78	+0.5
5,178,395	-		Psyr_4325	0.78	-1.6
5,178,395	-		Psyr_4325	0.78	-1.2
5,178,395	-		Psyr_4325	0.78	-0.8
5,178,488	+		Psyr_4325	0.85	+1.2
5,178,488	+		Psyr_4325	0.85	-0.7
5,178,488	+		Psyr_4325	0.85	-1.4
5,178,488	+		Psyr_4325	0.85	-1.1
5,178,489	-		Psyr_4325	0.85	+2.0
5,178,489	-		Psyr_4325	0.85	-2.0
5,178,489	-		Psyr_4325	0.85	+0.2
5,178,489	-		Psyr_4325	0.85	+0.2
5,178,489	-		Psyr_4325	0.85	-2.6
5,178,489	-		Psyr_4325	0.85	-1.0
5,178,489	-		Psyr_4325	0.85	-1.1
5,178,520	+		Psyr_4325	0.87	-0.3
5,178,555	-				+0.5
5,178,555	-				-0.0
5,178,620	-				-0.4
5,178,639	-				-0.7
5,178,665	+				-2.2
5,178,666	-				+1.3
5,178,666	-				-0.9
5,178,706	+				+1.3
5,178,706	+				+1.7
5,178,706	+				+0.1
5,178,707	-				-1.6
5,178,707	-				-0.6
5,178,707	-				-0.5
5,178,707	-				+2.5
5,178,747	-				-1.8
5,178,826	+				-2.7
5,178,931	+		Psyr_4326	0.15	-1.2
5,178,931	+		Psyr_4326	0.15	-0.0
5,178,931	+		Psyr_4326	0.15	+0.1
5,178,932	-		Psyr_4326	0.15	+0.7
5,178,932	-		Psyr_4326	0.15	-1.7
5,178,932	-		Psyr_4326	0.15	-1.9
5,178,932	-		Psyr_4326	0.15	-0.2
5,178,952	+		Psyr_4326	0.17	+0.3
5,178,952	+		Psyr_4326	0.17	-0.5
5,178,952	+		Psyr_4326	0.17	-0.4
5,178,952	+		Psyr_4326	0.17	+2.7
5,178,953	-		Psyr_4326	0.17	-2.0
5,179,009	+		Psyr_4326	0.23	-0.3
5,179,009	+		Psyr_4326	0.23	-0.9
5,179,010	-		Psyr_4326	0.23	+1.3
5,179,010	-		Psyr_4326	0.23	+0.3
5,179,010	-		Psyr_4326	0.23	-0.3
5,179,010	-		Psyr_4326	0.23	+1.4
5,179,010	-		Psyr_4326	0.23	-0.8
5,179,010	-		Psyr_4326	0.23	-0.5
5,179,206	-		Psyr_4326	0.42	-0.2
5,179,206	-		Psyr_4326	0.42	+0.3
5,179,206	-		Psyr_4326	0.42	+0.3
5,179,343	-		Psyr_4326	0.56	-0.0
5,179,439	+		Psyr_4326	0.65	-1.0
5,179,720	-				-0.9
5,179,720	-				+0.3
5,179,907	+				+0.3
5,180,025	+		Psyr_4327	0.29	+0.6
5,180,025	+		Psyr_4327	0.29	-1.5
5,180,025	+		Psyr_4327	0.29	-1.0
5,180,025	+		Psyr_4327	0.29	-1.2
5,180,025	+		Psyr_4327	0.29	+1.1
5,180,025	+		Psyr_4327	0.29	+0.2
5,180,026	-		Psyr_4327	0.29	+0.1
5,180,026	-		Psyr_4327	0.29	+0.2
5,180,026	-		Psyr_4327	0.29	+0.9
5,180,067	+		Psyr_4327	0.40	+1.1
5,180,067	+		Psyr_4327	0.40	-1.2
5,180,067	+		Psyr_4327	0.40	+0.7
5,180,067	+		Psyr_4327	0.40	-0.3
5,180,068	-		Psyr_4327	0.40	-1.1
5,180,068	-		Psyr_4327	0.40	+0.1
5,180,068	-		Psyr_4327	0.40	-0.4
5,180,068	-		Psyr_4327	0.40	-0.3
5,180,068	-		Psyr_4327	0.40	-0.2
5,180,404	+				-1.2