Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4078

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
4,859,933	+		Psyr_4076	0.58	-0.1
4,859,933	+		Psyr_4076	0.58	-1.1
4,859,933	+		Psyr_4076	0.58	+0.1
4,859,934	-		Psyr_4076	0.58	+0.4
4,859,934	-		Psyr_4076	0.58	+0.8
4,859,934	-		Psyr_4076	0.58	+0.4
4,860,039	+		Psyr_4076	0.68	+0.1
4,860,039	+		Psyr_4076	0.68	-0.4
4,860,039	+		Psyr_4076	0.68	+1.9
4,860,040	-		Psyr_4076	0.68	+2.6
4,860,040	-		Psyr_4076	0.68	+0.7
4,860,040	-		Psyr_4076	0.68	-0.5
4,860,040	-		Psyr_4076	0.68	+1.0
4,860,040	-		Psyr_4076	0.68	-0.6
4,860,216	-		Psyr_4076	0.86	+1.2
4,860,216	-		Psyr_4076	0.86	+1.1
4,860,360	+				+0.9
4,860,360	+				-0.3
4,860,360	+				-0.4
4,860,360	+				-2.8
4,860,360	+				+0.9
4,860,360	+				-0.3
4,860,361	-				-1.0
4,860,361	-				-1.2
4,860,371	+				-0.6
4,860,371	+				-1.0
4,860,371	+				-0.7
4,860,371	+				+0.3
4,860,371	+				-0.3
4,860,371	+				-1.1
4,860,371	+				+0.8
4,860,372	-				-0.4
4,860,372	-				-1.5
4,860,372	-				+1.5
4,860,372	-				-0.0
4,860,372	-				-0.1
4,860,372	-				+0.6
4,860,372	-				-0.7
4,860,372	-				+0.5
4,860,372	-				+0.3
4,860,380	+				-1.9
4,860,432	+				+0.2
4,860,432	+				+0.0
4,860,432	+				-1.1
4,860,432	+				-0.3
4,860,432	+				+0.9
4,860,432	+				-0.7
4,860,433	-				+0.4
4,860,433	-				-1.1
4,860,433	-				-1.2
4,860,433	-				-1.1
4,860,433	-				+1.9
4,860,433	-				-0.0
4,860,433	-				-1.0
4,860,503	+				-0.1
4,860,535	+				-0.1
4,860,535	+				+0.9
4,860,535	+				+0.9
4,860,535	+				-0.0
4,860,535	+				-0.3
4,860,536	-				-1.7
4,860,536	-				+0.1
4,860,536	-				-1.2
4,860,536	-				-0.8
4,860,541	+				+1.2
4,860,542	-				+1.2
4,860,542	-				-0.1
4,860,592	-		Psyr_4077	0.20	-2.7
4,860,653	-		Psyr_4077	0.38	-0.3
4,860,653	-		Psyr_4077	0.38	-1.3
4,860,653	-		Psyr_4077	0.38	-0.9
4,860,653	-		Psyr_4077	0.38	-1.5
4,860,690	-		Psyr_4077	0.48	+0.6
4,860,805	+		Psyr_4077	0.80	+0.0
4,860,845	+				+0.1
4,860,873	+				-0.3
4,860,873	+				-1.0
4,860,966	+				+0.0
4,860,986	-				-1.3
4,860,991	+				-1.9
4,861,023	+				-1.0
4,861,023	+				-3.3
4,861,023	+				-2.5
4,861,023	+				-2.6
4,861,023	+				-1.9
4,861,023	+				-2.4
4,861,024	-				-2.1
4,861,024	-				+0.7
4,861,024	-				-3.1
4,861,024	-				-3.0
4,861,024	-				-2.6
4,861,024	-				-0.1
4,861,024	-				-1.5
4,861,024	-				-1.7
4,861,024	-				-1.3
4,861,024	-				-0.3
4,861,025	+				-0.3
4,861,025	+				+0.3
4,861,025	+				-0.3
4,861,025	+				+0.3
4,861,025	+				-1.9
4,861,025	+				-3.2
4,861,025	+				+0.3
4,861,025	+				-1.3
4,861,025	+				-2.9
4,861,025	+				-0.2
4,861,025	+				-0.7
4,861,025	+				-0.9
4,861,025	+				+1.0
4,861,025	+				-0.4
4,861,025	+				+0.3
4,861,025	+				-2.1
4,861,025	+				+0.2
4,861,025	+				-0.1
4,861,026	-				-1.0
4,861,026	-				+1.3
4,861,026	-				-0.3
4,861,026	-				+1.3
4,861,026	-				-2.0
4,861,026	-				-1.9
4,861,026	-				-1.7
4,861,026	-				-0.3
4,861,026	-				-3.5
4,861,026	-				-1.7
4,861,026	-				-2.8
4,861,026	-				+1.0
4,861,026	-				-1.7
4,861,026	-				-2.8
4,861,026	-				-2.6
4,861,026	-				+1.9
4,861,026	-				-1.0
4,861,026	-				+0.3
4,861,026	-				+1.3
4,861,026	-				-0.3
4,861,026	-				-0.3
4,861,124	+		Psyr_4078	0.13	-1.2
4,861,124	+		Psyr_4078	0.13	-1.3
4,861,124	+		Psyr_4078	0.13	+2.9
4,861,124	+		Psyr_4078	0.13	-0.7
4,861,125	-		Psyr_4078	0.13	-2.3
4,861,125	-		Psyr_4078	0.13	+0.2
4,861,125	-		Psyr_4078	0.13	-1.7
4,861,392	+		Psyr_4078	0.30	-0.6
4,861,392	+		Psyr_4078	0.30	+0.3
4,861,392	+		Psyr_4078	0.30	-1.8
4,861,392	+		Psyr_4078	0.30	-2.4
4,861,392	+		Psyr_4078	0.30	+0.3
4,861,392	+		Psyr_4078	0.30	-1.7
4,861,392	+		Psyr_4078	0.30	+0.3
4,861,392	+		Psyr_4078	0.30	+1.3
4,861,392	+		Psyr_4078	0.30	-1.3
4,861,392	+		Psyr_4078	0.30	-1.3
4,861,392	+		Psyr_4078	0.30	-0.8
4,861,392	+		Psyr_4078	0.30	-1.4
4,861,392	+		Psyr_4078	0.30	-2.6
4,861,393	-		Psyr_4078	0.30	-1.8
4,861,393	-		Psyr_4078	0.30	-3.1
4,861,393	-		Psyr_4078	0.30	-0.7
4,861,393	-		Psyr_4078	0.30	+1.3
4,861,393	-		Psyr_4078	0.30	-0.5
4,861,393	-		Psyr_4078	0.30	+0.4
4,861,393	-		Psyr_4078	0.30	-0.1
4,861,393	-		Psyr_4078	0.30	-1.0
4,861,393	-		Psyr_4078	0.30	-1.5
4,861,393	-		Psyr_4078	0.30	-0.4
4,861,443	+		Psyr_4078	0.33	-1.9
4,861,443	+		Psyr_4078	0.33	-2.0
4,861,443	+		Psyr_4078	0.33	-1.9
4,861,443	+		Psyr_4078	0.33	-0.4
4,861,444	-		Psyr_4078	0.33	-1.3
4,861,444	-		Psyr_4078	0.33	-3.2
4,861,444	-		Psyr_4078	0.33	-0.3
4,861,444	-		Psyr_4078	0.33	-2.5
4,861,479	+		Psyr_4078	0.35	-1.7
4,861,480	-		Psyr_4078	0.35	+0.7
4,861,480	-		Psyr_4078	0.35	-2.6
4,861,506	+		Psyr_4078	0.37	-2.3
4,861,506	+		Psyr_4078	0.37	-1.3
4,861,506	+		Psyr_4078	0.37	-1.7
4,861,506	+		Psyr_4078	0.37	-0.3
4,861,506	+		Psyr_4078	0.37	+0.3
4,861,506	+		Psyr_4078	0.37	-0.0
4,861,506	+		Psyr_4078	0.37	-1.6
4,861,506	+		Psyr_4078	0.37	+0.6
4,861,506	+		Psyr_4078	0.37	-0.4
4,861,506	+		Psyr_4078	0.37	+0.7
4,861,506	+		Psyr_4078	0.37	-0.8
4,861,506	+		Psyr_4078	0.37	-0.3
4,861,506	+		Psyr_4078	0.37	-1.7
4,861,506	+		Psyr_4078	0.37	+0.1
4,861,506	+		Psyr_4078	0.37	-1.9
4,861,506	+		Psyr_4078	0.37	-0.1
4,861,506	+		Psyr_4078	0.37	-1.7
4,861,506	+		Psyr_4078	0.37	+1.1
4,861,506	+		Psyr_4078	0.37	-0.6
4,861,506	+		Psyr_4078	0.37	+0.1
4,861,507	-		Psyr_4078	0.37	-0.6
4,861,507	-		Psyr_4078	0.37	-2.3
4,861,507	-		Psyr_4078	0.37	-2.3
4,861,507	-		Psyr_4078	0.37	-1.7
4,861,507	-		Psyr_4078	0.37	-0.1
4,861,507	-		Psyr_4078	0.37	+1.0
4,861,507	-		Psyr_4078	0.37	-1.7
4,861,507	-		Psyr_4078	0.37	-1.5
4,861,507	-		Psyr_4078	0.37	-1.3
4,861,507	-		Psyr_4078	0.37	-1.1
4,861,507	-		Psyr_4078	0.37	-0.2
4,861,507	-		Psyr_4078	0.37	+1.6
4,861,507	-		Psyr_4078	0.37	-1.3
4,861,507	-		Psyr_4078	0.37	-3.1
4,861,507	-		Psyr_4078	0.37	-3.6
4,861,507	-		Psyr_4078	0.37	+0.2
4,861,507	-		Psyr_4078	0.37	-2.5
4,861,507	-		Psyr_4078	0.37	-1.7
4,861,507	-		Psyr_4078	0.37	-0.7
4,861,686	+		Psyr_4078	0.49	+1.8
4,861,686	+		Psyr_4078	0.49	-0.2
4,861,686	+		Psyr_4078	0.49	-0.0
4,861,686	+		Psyr_4078	0.49	-0.5
4,861,687	-		Psyr_4078	0.49	-1.5
4,861,777	-		Psyr_4078	0.55	-2.6
4,861,909	-		Psyr_4078	0.63	+1.0
4,861,953	+		Psyr_4078	0.66	-0.6
4,861,954	-		Psyr_4078	0.66	-1.5
4,861,954	-		Psyr_4078	0.66	-0.1
4,861,971	-		Psyr_4078	0.67	-1.3
4,862,168	+		Psyr_4078	0.80	-0.7
4,862,224	-		Psyr_4078	0.83	-1.9
4,862,265	+		Psyr_4078	0.86	-0.0
4,862,266	-		Psyr_4078	0.86	+1.6
4,862,316	+		Psyr_4078	0.89	+0.9
4,862,425	+				+0.9
4,862,425	+				-0.7
4,862,426	-				+0.8
4,862,426	-				-2.9
4,862,426	-				-1.6
4,862,609	-		Psyr_4079	0.30	-0.3
4,862,609	-		Psyr_4079	0.30	+0.3
4,862,609	-		Psyr_4079	0.30	-0.1
4,862,713	+		Psyr_4079	0.61	+0.8
4,862,714	-		Psyr_4079	0.62	-1.5
4,862,727	-		Psyr_4079	0.65	-1.1
4,862,753	+		Psyr_4079	0.73	-0.3
4,862,753	+		Psyr_4079	0.73	+0.7
4,862,753	+		Psyr_4079	0.73	-0.3
4,862,753	+		Psyr_4079	0.73	+0.8
4,862,753	+		Psyr_4079	0.73	-0.3
4,862,753	+				+1.3
4,862,753	+		Psyr_4079	0.73	+0.4
4,862,753	+		Psyr_4079	0.73	+0.4
4,862,753	+		Psyr_4079	0.73	-0.1
4,862,753	+		Psyr_4079	0.73	-0.1
4,862,754	-		Psyr_4079	0.74	-1.3
4,862,754	-		Psyr_4079	0.74	-0.4
4,862,754	-		Psyr_4079	0.74	+0.8
4,862,754	-		Psyr_4079	0.74	+2.7
4,862,754	-		Psyr_4079	0.74	+0.4
4,862,754	-		Psyr_4079	0.74	-0.2
4,862,754	-		Psyr_4079	0.74	+1.3
4,862,754	-		Psyr_4079	0.74	-1.5
4,862,754	-		Psyr_4079	0.74	-0.2
4,862,754	-		Psyr_4079	0.74	+0.4
4,862,757	+		Psyr_4079	0.74	-2.3
4,862,757	+		Psyr_4079	0.74	-0.7
4,862,757	+		Psyr_4079	0.74	-1.6
4,862,757	+		Psyr_4079	0.74	-0.1
4,862,757	+		Psyr_4079	0.74	+0.1
4,862,757	+		Psyr_4079	0.74	+0.8
4,862,758	-		Psyr_4079	0.75	+1.1
4,862,758	-		Psyr_4079	0.75	+1.4
4,862,758	-		Psyr_4079	0.75	+1.3
4,862,758	-		Psyr_4079	0.75	+0.6
4,862,758	-		Psyr_4079	0.75	+1.3
4,862,758	-		Psyr_4079	0.75	+0.2
4,862,758	-		Psyr_4079	0.75	+0.5
4,862,758	-		Psyr_4079	0.75	+0.0
4,862,758	-		Psyr_4079	0.75	+0.3
4,862,809	-				+0.8
4,862,815	-				-0.2
4,862,826	+				+0.3
4,862,826	+				+0.6
4,862,826	+				-0.3
4,862,826	+				-1.4
4,862,826	+				+0.4
4,862,827	-				+0.9
4,862,827	-				-0.4
4,862,827	-				-0.7
4,862,827	-				-0.8
4,862,828	+				+1.5
4,862,828	+				+0.9
4,862,828	+				-0.6
4,862,828	+				-0.2
4,862,828	+				-0.0
4,862,828	+				+1.3
4,862,828	+				-0.3
4,862,828	+				+0.7
4,862,828	+				-1.1
4,862,828	+				-0.4
4,862,828	+				-1.9
4,862,829	-				+1.3
4,862,829	-				-0.2
4,862,829	-				-0.0
4,862,829	-				+0.5
4,862,829	-				-1.7
4,862,829	-				+0.2
4,862,829	-				+0.0
4,862,829	-				+0.5
4,862,829	-				+0.9
4,862,829	-				-0.7
4,862,889	+				+0.9
4,862,890	-				-0.0
4,862,891	+				+0.6
4,862,891	+				-0.4
4,862,891	+				+1.5
4,862,891	+				+0.3
4,862,891	+				-2.3
4,862,891	+				-1.5
4,862,891	+				-0.1
4,862,891	+				+2.0
4,862,891	+				-1.7
4,862,891	+				-1.1
4,862,892	-				-0.7
4,862,892	-				-0.7
4,862,892	-				-0.3
4,862,892	-				+0.7
4,862,892	-				-0.8
4,862,892	-				+0.3
4,862,892	-				+0.5
4,862,892	-				-1.5
4,862,892	-				+0.2
4,862,907	+				+0.6
4,862,965	-				-1.4
4,863,002	+				+0.0
4,863,002	+				-0.1
4,863,003	-				+0.7
4,863,003	-				+0.3
4,863,003	-				+0.3
4,863,003	-				-1.3
4,863,023	+				+1.7
4,863,024	-				-0.3
4,863,054	+				+0.8
4,863,080	+				+0.1
4,863,081	-				+0.0
4,863,081	-				-2.0
4,863,081	-				-0.0
4,863,083	-				-2.8
4,863,083	-				+0.6
4,863,083	-				-0.3
4,863,083	-				-0.2
4,863,083	-				-0.1
4,863,083	-				+0.6
4,863,100	+				-2.5
4,863,100	+				+1.0
4,863,100	+				-1.3
4,863,100	+				-0.6
4,863,100	+				+0.6
4,863,100	+				-0.8
4,863,101	-				+1.4
4,863,101	-				-0.5
4,863,101	-				-0.3
4,863,101	-				-0.7
4,863,101	-				-0.3
4,863,103	-				+1.0
4,863,137	+				-0.1
4,863,138	-				-3.1
4,863,139	+				+0.0
4,863,139	+				-0.7
4,863,139	+				+0.4
4,863,139	+				-0.4
4,863,139	+				-0.1
4,863,140	-				-0.6
4,863,140	-				+2.8
4,863,140	-				+0.6
4,863,140	-				+2.3
4,863,140	-				-2.2
4,863,141	+				-2.3
4,863,142	-				-2.2
4,863,142	-				-0.1
4,863,158	+				+0.4
4,863,159	-				-0.4
4,863,167	+				+0.1
4,863,365	+				-1.9
4,863,365	+				+0.7
4,863,366	-				-0.6
4,863,366	-				+0.4
4,863,392	-				+0.5
4,863,392	-				+1.5
4,863,403	+				+0.3
4,863,403	+				-1.2
4,863,403	+				+0.7
4,863,403	+				+1.3
4,863,403	+				+1.8
4,863,403	+				+1.7
4,863,404	-				+1.3
4,863,404	-				-1.3
4,863,404	-				+0.6
4,863,404	-				-0.1
4,863,404	-				-0.5
4,863,404	-				-0.6
4,863,405	+				-0.7
4,863,405	+				-0.1
4,863,405	+				-0.6
4,863,451	+		Psyr_4080	0.12	-0.4