Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3930

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
4,672,857	-		Psyr_3928	0.86	+0.6
4,672,907	+				+0.4
4,672,910	+				+0.3
4,672,910	+				-2.2
4,673,035	+		Psyr_3929	0.10	+1.2
4,673,035	+		Psyr_3929	0.10	-0.4
4,673,035	+		Psyr_3929	0.10	-0.3
4,673,035	+		Psyr_3929	0.10	-1.8
4,673,035	+		Psyr_3929	0.10	-0.6
4,673,036	-		Psyr_3929	0.10	-0.2
4,673,036	-		Psyr_3929	0.10	-0.3
4,673,036	-		Psyr_3929	0.10	-0.1
4,673,036	-		Psyr_3929	0.10	+0.2
4,673,159	-		Psyr_3929	0.50	+0.9
4,673,159	-		Psyr_3929	0.50	-0.3
4,673,159	-		Psyr_3929	0.50	+2.9
4,673,315	+				-1.8
4,673,315	+				-0.7
4,673,315	+				-0.9
4,673,316	-				-0.3
4,673,316	-				-1.9
4,673,332	+				-1.9
4,673,482	-				+1.5
4,673,509	-				+0.2
4,673,509	-				+0.1
4,673,628	+				+0.2
4,673,628	+				-1.1
4,673,628	+				-1.5
4,673,628	+				+0.1
4,673,628	+				+0.7
4,673,629	-				+0.1
4,673,645	+				+1.6
4,673,645	+				-0.7
4,673,645	+				-1.3
4,673,646	-				-0.3
4,673,646	-				+1.2
4,673,646	-				-2.1
4,673,649	+				+0.7
4,673,649	+				+1.0
4,673,649	+				-0.0
4,673,649	+				+1.2
4,673,649	+				-1.1
4,673,649	+				-0.3
4,673,650	-				-0.9
4,673,650	-				+1.5
4,673,672	-				+0.7
4,673,672	-				+0.2
4,673,672	-				+0.9
4,673,672	-				-0.2
4,673,695	+				-0.7
4,673,695	+				+0.9
4,673,798	+				-1.1
4,673,798	+				-1.3
4,673,798	+				+0.4
4,673,798	+				-1.8
4,673,798	+				+0.2
4,673,798	+				-1.2
4,673,799	-				+0.6
4,673,799	-				+0.9
4,673,799	-				-0.2
4,673,799	-				-0.9
4,673,799	-				-0.9
4,673,799	-				+0.2
4,673,799	-				-0.3
4,673,801	+				-0.3
4,673,802	-				-0.1
4,673,802	-				+0.1
4,674,365	+		Psyr_3930	0.29	+0.9
4,674,365	+		Psyr_3930	0.29	-2.5
4,674,365	+		Psyr_3930	0.29	-1.2
4,674,366	-		Psyr_3930	0.29	+0.3
4,674,366	-		Psyr_3930	0.29	-0.0
4,674,366	-		Psyr_3930	0.29	+1.5
4,674,366	-		Psyr_3930	0.29	-0.6
4,674,366	-		Psyr_3930	0.29	+0.2
4,674,506	+		Psyr_3930	0.34	+0.4
4,674,506	+		Psyr_3930	0.34	+0.7
4,674,507	-		Psyr_3930	0.34	-1.7
4,674,507	-		Psyr_3930	0.34	+1.4
4,674,738	-		Psyr_3930	0.44	+0.4
4,674,740	+		Psyr_3930	0.44	-0.2
4,674,740	+		Psyr_3930	0.44	-0.8
4,674,740	+		Psyr_3930	0.44	+0.8
4,674,740	+		Psyr_3930	0.44	-0.6
4,674,741	-		Psyr_3930	0.44	-1.2
4,674,741	-		Psyr_3930	0.44	+0.2
4,674,843	-		Psyr_3930	0.48	+1.0
4,674,843	-		Psyr_3930	0.48	-1.5
4,674,849	+		Psyr_3930	0.49	-0.8
4,674,849	+		Psyr_3930	0.49	+0.1
4,674,849	+		Psyr_3930	0.49	-0.9
4,674,849	+		Psyr_3930	0.49	+0.3
4,674,849	+		Psyr_3930	0.49	-1.6
4,674,849	+		Psyr_3930	0.49	+0.1
4,674,849	+		Psyr_3930	0.49	-0.0
4,674,849	+		Psyr_3930	0.49	-1.6
4,674,849	+		Psyr_3930	0.49	-0.3
4,674,850	-		Psyr_3930	0.49	-1.8
4,674,850	-		Psyr_3930	0.49	+0.6
4,674,850	-		Psyr_3930	0.49	-0.4
4,674,926	+		Psyr_3930	0.52	-1.0
4,674,926	+		Psyr_3930	0.52	-0.9
4,674,926	+		Psyr_3930	0.52	-0.2
4,674,926	+		Psyr_3930	0.52	-0.8
4,674,926	+		Psyr_3930	0.52	+0.8
4,674,926	+		Psyr_3930	0.52	-1.1
4,674,927	-		Psyr_3930	0.52	+0.8
4,674,989	+		Psyr_3930	0.54	-0.7
4,675,003	+		Psyr_3930	0.55	-0.8
4,675,036	+		Psyr_3930	0.56	-0.8
4,675,036	+		Psyr_3930	0.56	-1.2
4,675,055	+		Psyr_3930	0.57	+0.9
4,675,055	+		Psyr_3930	0.57	-1.8
4,675,056	-		Psyr_3930	0.57	-0.0
4,675,056	-		Psyr_3930	0.57	-1.0
4,675,109	+		Psyr_3930	0.59	-1.9
4,675,204	-		Psyr_3930	0.63	+2.1
4,675,232	+		Psyr_3930	0.64	+0.9
4,675,232	+		Psyr_3930	0.64	+0.5
4,675,232	+		Psyr_3930	0.64	-0.8
4,675,232	+		Psyr_3930	0.64	-1.6
4,675,233	-		Psyr_3930	0.64	-0.2
4,675,233	-		Psyr_3930	0.64	-1.8
4,675,233	-		Psyr_3930	0.64	+0.2
4,675,233	-		Psyr_3930	0.64	+1.7
4,675,233	-		Psyr_3930	0.64	+0.9
4,675,233	-		Psyr_3930	0.64	+0.2
4,675,233	-		Psyr_3930	0.64	-1.6
4,675,233	-		Psyr_3930	0.64	+0.5
4,675,233	-		Psyr_3930	0.64	-3.1
4,675,233	-		Psyr_3930	0.64	-1.6
4,675,233	-		Psyr_3930	0.64	+0.6
4,675,246	+		Psyr_3930	0.65	-0.6
4,675,247	-		Psyr_3930	0.65	-1.3
4,675,247	-		Psyr_3930	0.65	-3.2
4,675,366	+		Psyr_3930	0.70	-0.6
4,675,520	-		Psyr_3930	0.76	-1.3
4,675,561	+		Psyr_3930	0.78	+0.8
4,675,561	+		Psyr_3930	0.78	+0.0
4,675,561	+		Psyr_3930	0.78	-0.6
4,675,562	-		Psyr_3930	0.78	+1.6
4,675,562	-		Psyr_3930	0.78	-2.5
4,675,562	-		Psyr_3930	0.78	+0.7
4,675,562	-		Psyr_3930	0.78	+0.3
4,675,565	+		Psyr_3930	0.78	-0.2
4,675,565	+		Psyr_3930	0.78	-0.4
4,675,565	+		Psyr_3930	0.78	-0.3
4,675,565	+		Psyr_3930	0.78	-1.1
4,675,565	+		Psyr_3930	0.78	-0.2
4,675,565	+		Psyr_3930	0.78	+2.5
4,675,565	+		Psyr_3930	0.78	+0.4
4,675,565	+		Psyr_3930	0.78	-0.5
4,675,565	+		Psyr_3930	0.78	-3.1
4,675,565	+		Psyr_3930	0.78	+1.0
4,675,565	+		Psyr_3930	0.78	-0.2
4,675,565	+		Psyr_3930	0.78	-1.1
4,675,565	+		Psyr_3930	0.78	+1.1
4,675,565	+		Psyr_3930	0.78	-0.0
4,675,565	+		Psyr_3930	0.78	+1.1
4,675,565	+		Psyr_3930	0.78	+1.1
4,675,566	-		Psyr_3930	0.78	+1.3
4,675,566	-		Psyr_3930	0.78	-0.1
4,675,566	-		Psyr_3930	0.78	+0.2
4,675,566	-		Psyr_3930	0.78	-1.6
4,675,566	-		Psyr_3930	0.78	-1.8
4,675,566	-		Psyr_3930	0.78	-0.6
4,675,566	-		Psyr_3930	0.78	-0.6
4,675,566	-		Psyr_3930	0.78	+0.6
4,675,566	-		Psyr_3930	0.78	+0.7
4,675,566	-		Psyr_3930	0.78	+0.7
4,675,566	-		Psyr_3930	0.78	-2.5
4,675,566	-		Psyr_3930	0.78	+1.7
4,675,566	-		Psyr_3930	0.78	+0.9
4,675,566	-		Psyr_3930	0.78	-0.6
4,675,644	+		Psyr_3930	0.81	-1.8
4,675,733	+		Psyr_3930	0.85	-0.1
4,675,734	-		Psyr_3930	0.85	+0.4
4,675,734	-		Psyr_3930	0.85	+0.9
4,675,852	+		Psyr_3930	0.90	-0.8
4,675,853	-				-0.8
4,675,853	-				-0.3
4,675,853	-				+0.3
4,675,853	-				-2.3
4,675,892	-				-1.5
4,675,904	+				-0.5
4,675,916	+				+0.0
4,675,916	+				-0.3
4,675,917	-				-0.8
4,675,917	-				+0.2
4,675,917	-				+1.5
4,675,917	-				+1.1
4,675,917	-				+0.6
4,675,917	-				+0.7
4,675,988	+				-0.3
4,675,989	-				-0.0
4,675,989	-				-2.0
4,676,012	+				-1.7
4,676,012	+				+0.2
4,676,012	+				+0.0
4,676,013	-				+0.4
4,676,013	-				+2.0
4,676,013	-				+0.5
4,676,013	-				-2.6
4,676,013	-				-0.6
4,676,013	-				+0.5
4,676,066	+				+2.6
4,676,067	-				+0.9
4,676,067	-				+1.7
4,676,089	+				+0.1
4,676,093	+				-0.3
4,676,093	+				+0.4
4,676,093	+				-0.6
4,676,093	+				-0.1
4,676,093	+				+0.2
4,676,093	+				-1.1
4,676,093	+				-0.0
4,676,094	-				+0.3
4,676,094	-				+0.5
4,676,094	-				+0.1
4,676,094	-				-0.2
4,676,183	+				+0.9
4,676,344	-				+0.2
4,676,344	-				+2.5
4,676,403	+				-1.9
4,676,404	-				-0.3
4,676,780	+				+0.5
4,676,886	+				-0.8
4,676,886	+				+0.0
4,676,886	+				+0.6
4,676,887	-				-0.4
4,676,887	-				+0.7
4,676,943	+		Psyr_3931	0.10	+1.2
4,676,944	-		Psyr_3931	0.10	+1.2
4,677,030	+		Psyr_3931	0.17	-0.4
4,677,036	+		Psyr_3931	0.18	-0.7
4,677,090	+		Psyr_3931	0.22	+1.2
4,677,090	+		Psyr_3931	0.22	+2.5
4,677,090	+		Psyr_3931	0.22	-0.2
4,677,090	+		Psyr_3931	0.22	+0.1
4,677,090	+		Psyr_3931	0.22	-0.2
4,677,090	+		Psyr_3931	0.22	+1.6
4,677,090	+		Psyr_3931	0.22	-0.8
4,677,091	-		Psyr_3931	0.22	+0.8
4,677,091	-		Psyr_3931	0.22	-3.4
4,677,091	-		Psyr_3931	0.22	-1.0
4,677,091	-		Psyr_3931	0.22	-0.6
4,677,091	-		Psyr_3931	0.22	+1.0
4,677,091	-		Psyr_3931	0.22	-1.1
4,677,091	-		Psyr_3931	0.22	+1.4
4,677,091	-		Psyr_3931	0.22	-2.1
4,677,091	-		Psyr_3931	0.22	-1.3
4,677,093	+		Psyr_3931	0.23	+0.2