Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3846

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
4,584,132	+		Psyr_3845	0.37	+0.8
4,584,133	-		Psyr_3845	0.37	+0.8
4,584,192	+		Psyr_3845	0.42	+0.3
4,584,192	+		Psyr_3845	0.42	-0.1
4,584,192	+		Psyr_3845	0.42	+0.5
4,584,192	+		Psyr_3845	0.42	-0.7
4,584,192	+		Psyr_3845	0.42	-1.1
4,584,192	+		Psyr_3845	0.42	+0.2
4,584,193	-		Psyr_3845	0.42	-2.1
4,584,193	-		Psyr_3845	0.42	-1.7
4,584,193	-		Psyr_3845	0.42	+0.7
4,584,193	-		Psyr_3845	0.42	-0.8
4,584,193	-		Psyr_3845	0.42	-0.1
4,584,193	-		Psyr_3845	0.42	-0.6
4,584,193	-		Psyr_3845	0.42	-0.2
4,584,193	-		Psyr_3845	0.42	+0.7
4,584,193	-		Psyr_3845	0.42	+0.3
4,584,193	-		Psyr_3845	0.42	-0.6
4,584,193	-		Psyr_3845	0.42	-0.5
4,584,249	+		Psyr_3845	0.47	+0.7
4,584,261	-		Psyr_3845	0.48	+1.0
4,584,394	-		Psyr_3845	0.60	+0.6
4,584,396	+		Psyr_3845	0.60	-0.5
4,584,397	-		Psyr_3845	0.60	-0.2
4,584,397	-		Psyr_3845	0.60	-0.1
4,584,843	+				-0.6
4,584,843	+				+1.8
4,584,844	-				-0.5
4,584,844	-				+0.7
4,584,844	-				-1.7
4,584,939	+				+0.3
4,584,939	+				-0.8
4,584,939	+				+1.1
4,584,939	+				+1.6
4,584,939	+				-0.1
4,584,939	+				-0.0
4,584,939	+				+0.4
4,584,939	+				-0.0
4,584,939	+				-0.6
4,584,939	+				-0.7
4,584,939	+				-0.0
4,584,939	+				+1.0
4,584,939	+				-2.9
4,584,940	-				+0.1
4,584,940	-				+0.3
4,584,940	-				-0.3
4,584,940	-				+0.0
4,585,003	+				-1.2
4,585,059	+				-0.0
4,585,060	-				+0.8
4,585,060	-				+0.0
4,585,083	+				+0.5
4,585,084	-				+0.5
4,585,091	+				-0.0
4,585,091	+				-1.4
4,585,091	+				-0.3
4,585,091	+				-0.8
4,585,091	+				-1.1
4,585,091	+				-0.4
4,585,091	+				+0.7
4,585,092	-				-1.0
4,585,092	-				-1.4
4,585,092	-				-0.9
4,585,129	+				+0.6
4,585,129	+				-0.1
4,585,129	+				-0.7
4,585,130	-				+0.5
4,585,130	-				-1.9
4,585,130	-				-1.4
4,585,130	-				-0.4
4,585,133	+				-1.1
4,585,133	+				+0.6
4,585,133	+				-2.4
4,585,133	+				+0.2
4,585,133	+				-0.2
4,585,133	+				+0.8
4,585,133	+				+2.4
4,585,133	+				-1.6
4,585,133	+				-0.5
4,585,134	-				+0.4
4,585,134	-				-1.8
4,585,134	-				-0.5
4,585,134	-				-0.6
4,585,134	-				-1.5
4,585,134	-				+0.9
4,585,134	-				-1.3
4,585,134	-				-0.8
4,585,134	-				-0.3
4,585,134	-				+0.5
4,585,134	-				-0.0
4,585,134	-				+0.3
4,585,134	-				-0.4
4,585,134	-				+0.7
4,585,154	+				+0.6
4,585,155	-				-0.6
4,585,166	+		Psyr_3846	0.10	+0.7
4,585,166	+		Psyr_3846	0.10	+1.4
4,585,167	-		Psyr_3846	0.10	+1.0
4,585,208	+		Psyr_3846	0.15	-3.0
4,585,208	+		Psyr_3846	0.15	+0.6
4,585,208	+		Psyr_3846	0.15	-0.4
4,585,208	+		Psyr_3846	0.15	-0.1
4,585,208	+		Psyr_3846	0.15	-1.5
4,585,208	+		Psyr_3846	0.15	-2.1
4,585,208	+		Psyr_3846	0.15	-0.2
4,585,208	+		Psyr_3846	0.15	-0.4
4,585,208	+		Psyr_3846	0.15	+0.1
4,585,208	+		Psyr_3846	0.15	-0.0
4,585,208	+		Psyr_3846	0.15	+0.2
4,585,208	+		Psyr_3846	0.15	-2.6
4,585,208	+		Psyr_3846	0.15	-1.7
4,585,208	+		Psyr_3846	0.15	+3.8
4,585,208	+		Psyr_3846	0.15	+1.3
4,585,209	-		Psyr_3846	0.15	-1.4
4,585,209	-		Psyr_3846	0.15	-0.1
4,585,209	-		Psyr_3846	0.15	-0.7
4,585,209	-		Psyr_3846	0.15	-1.3
4,585,209	-		Psyr_3846	0.15	+0.2
4,585,209	-		Psyr_3846	0.15	+1.0
4,585,209	-		Psyr_3846	0.15	+0.2
4,585,209	-		Psyr_3846	0.15	-1.0
4,585,209	-		Psyr_3846	0.15	-2.1
4,585,209	-		Psyr_3846	0.15	+0.9
4,585,223	+		Psyr_3846	0.16	+0.4
4,585,223	+		Psyr_3846	0.16	-2.7
4,585,223	+		Psyr_3846	0.16	-3.1
4,585,223	+		Psyr_3846	0.16	+0.5
4,585,223	+		Psyr_3846	0.16	-3.8
4,585,223	+		Psyr_3846	0.16	-0.0
4,585,223	+		Psyr_3846	0.16	-0.5
4,585,223	+		Psyr_3846	0.16	-1.3
4,585,223	+		Psyr_3846	0.16	+0.9
4,585,224	-		Psyr_3846	0.16	-0.4
4,585,224	-		Psyr_3846	0.16	+0.4
4,585,224	-		Psyr_3846	0.16	+0.4
4,585,224	-		Psyr_3846	0.16	-0.2
4,585,224	-		Psyr_3846	0.16	-1.4
4,585,328	+		Psyr_3846	0.28	+1.6
4,585,328	+		Psyr_3846	0.28	-0.4
4,585,533	-		Psyr_3846	0.50	-0.2
4,585,533	-		Psyr_3846	0.50	-2.3
4,585,533	-		Psyr_3846	0.50	-2.1
4,585,533	-		Psyr_3846	0.50	+1.5
4,585,533	-		Psyr_3846	0.50	-0.9
4,585,737	+		Psyr_3846	0.72	-0.7
4,585,737	+		Psyr_3846	0.72	-0.8
4,585,738	-		Psyr_3846	0.72	-0.1
4,585,748	+		Psyr_3846	0.73	-0.3
4,585,810	-		Psyr_3846	0.80	-1.1
4,585,904	+				-2.4
4,585,905	-				+0.7
4,585,905	-				+0.3
4,585,905	-				+0.7
4,585,992	+				-1.5
4,585,992	+				-0.0
4,585,993	-				-1.6
4,585,993	-				-2.8
4,585,993	-				-3.6
4,585,993	-				+0.2
4,585,993	-				+2.7
4,586,050	+				-0.2
4,586,131	-		Psyr_3847	0.11	-0.4
4,586,131	-		Psyr_3847	0.11	-2.3
4,586,356	+		Psyr_3847	0.29	-0.7
4,586,356	+		Psyr_3847	0.29	+1.5
4,586,356	+		Psyr_3847	0.29	+1.0
4,586,356	+		Psyr_3847	0.29	+0.0
4,586,357	-		Psyr_3847	0.29	-0.4
4,586,357	-		Psyr_3847	0.29	+0.4
4,586,357	-				+1.2
4,586,357	-		Psyr_3847	0.29	-1.5
4,586,357	-		Psyr_3847	0.29	-0.2
4,586,357	-		Psyr_3847	0.29	+3.1
4,586,419	+		Psyr_3847	0.34	-0.5
4,586,419	+		Psyr_3847	0.34	-0.1
4,586,420	-		Psyr_3847	0.34	-1.6
4,586,452	+		Psyr_3847	0.36	+0.1
4,586,452	+		Psyr_3847	0.36	-1.1
4,586,452	+		Psyr_3847	0.36	-2.2
4,586,452	+		Psyr_3847	0.36	+1.6
4,586,453	-		Psyr_3847	0.36	-1.2
4,586,453	-		Psyr_3847	0.36	-1.5
4,586,470	+		Psyr_3847	0.38	-1.0
4,586,471	-		Psyr_3847	0.38	+0.5
4,586,471	-		Psyr_3847	0.38	-0.5
4,586,471	-		Psyr_3847	0.38	-2.3
4,586,471	-		Psyr_3847	0.38	-3.7
4,586,471	-		Psyr_3847	0.38	-0.1
4,586,572	+		Psyr_3847	0.46	-2.0
4,586,572	+		Psyr_3847	0.46	-0.8
4,586,572	+		Psyr_3847	0.46	+0.9
4,586,573	-		Psyr_3847	0.46	+0.2
4,586,755	+		Psyr_3847	0.60	+0.2
4,586,756	-		Psyr_3847	0.60	-1.0
4,586,756	-		Psyr_3847	0.60	-1.5
4,586,973	+		Psyr_3847	0.77	-1.1
4,586,973	+		Psyr_3847	0.77	-0.1
4,586,974	-		Psyr_3847	0.77	-1.1