Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1446

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
1,635,275	+				-1.2
1,635,275	+				+1.7
1,635,275	+				+0.5
1,635,275	+				+0.2
1,635,276	-				-0.8
1,635,276	-				+0.8
1,635,276	-				-2.3
1,635,291	+				-2.0
1,635,387	+		Psyr_1445	0.10	-0.1
1,635,387	+		Psyr_1445	0.10	+1.3
1,635,387	+		Psyr_1445	0.10	+0.4
1,635,388	-		Psyr_1445	0.11	-0.8
1,635,388	-		Psyr_1445	0.11	-0.0
1,635,388	-		Psyr_1445	0.11	+0.4
1,635,388	-		Psyr_1445	0.11	+0.2
1,635,388	-		Psyr_1445	0.11	-0.6
1,635,388	-		Psyr_1445	0.11	-0.7
1,635,430	-		Psyr_1445	0.15	-0.8
1,635,430	-		Psyr_1445	0.15	-0.1
1,635,430	-		Psyr_1445	0.15	+0.6
1,635,557	+		Psyr_1445	0.29	-0.6
1,635,557	+		Psyr_1445	0.29	+1.0
1,635,557	+		Psyr_1445	0.29	+2.4
1,635,558	-		Psyr_1445	0.29	-0.0
1,635,558	-		Psyr_1445	0.29	+0.4
1,635,558	-		Psyr_1445	0.29	+0.9
1,635,558	-		Psyr_1445	0.29	-0.3
1,635,578	+		Psyr_1445	0.31	-0.0
1,635,578	+				+2.6
1,635,578	+		Psyr_1445	0.31	-0.3
1,635,578	+				+1.2
1,635,579	-		Psyr_1445	0.31	-0.9
1,635,579	-		Psyr_1445	0.31	-0.5
1,635,669	+		Psyr_1445	0.41	-1.8
1,635,669	+		Psyr_1445	0.41	+1.7
1,635,669	+		Psyr_1445	0.41	+0.0
1,635,670	-		Psyr_1445	0.41	+0.3
1,635,670	-		Psyr_1445	0.41	-0.7
1,635,670	-		Psyr_1445	0.41	+2.2
1,635,811	+		Psyr_1445	0.56	+0.5
1,635,811	+		Psyr_1445	0.56	-0.4
1,635,812	-		Psyr_1445	0.56	-1.9
1,635,898	+		Psyr_1445	0.66	-1.1
1,635,898	+		Psyr_1445	0.66	-1.8
1,635,899	-		Psyr_1445	0.66	-1.0
1,635,965	+		Psyr_1445	0.73	-1.6
1,635,965	+		Psyr_1445	0.73	-1.8
1,635,966	-		Psyr_1445	0.73	-0.4
1,635,966	-		Psyr_1445	0.73	+0.7
1,635,966	-		Psyr_1445	0.73	-0.3
1,635,967	+		Psyr_1445	0.73	+0.2
1,635,967	+		Psyr_1445	0.73	-0.8
1,635,967	+		Psyr_1445	0.73	-0.5
1,635,967	+		Psyr_1445	0.73	+0.5
1,635,967	+		Psyr_1445	0.73	+0.1
1,635,968	-		Psyr_1445	0.73	+0.2
1,635,968	-		Psyr_1445	0.73	+0.7
1,635,968	-		Psyr_1445	0.73	-0.2
1,635,968	-		Psyr_1445	0.73	-3.5
1,635,968	-		Psyr_1445	0.73	-1.7
1,635,968	-		Psyr_1445	0.73	-1.8
1,635,987	+		Psyr_1445	0.75	-0.5
1,635,987	+		Psyr_1445	0.75	-2.4
1,635,987	+		Psyr_1445	0.75	+1.6
1,635,987	+		Psyr_1445	0.75	+0.2
1,635,987	+		Psyr_1445	0.75	+0.0
1,635,988	-		Psyr_1445	0.76	+1.4
1,636,178	+				+0.8
1,636,196	+				+0.6
1,636,197	-				-1.5
1,636,197	-				-1.4
1,636,284	-		Psyr_1446	0.11	+0.3
1,636,284	-		Psyr_1446	0.11	-0.2
1,636,284	-		Psyr_1446	0.11	+1.0
1,636,284	-		Psyr_1446	0.11	+2.0
1,636,332	+		Psyr_1446	0.18	+0.4
1,636,332	+		Psyr_1446	0.18	+0.2
1,636,332	+		Psyr_1446	0.18	-2.1
1,636,332	+		Psyr_1446	0.18	+0.7
1,636,332	+		Psyr_1446	0.18	+3.1
1,636,332	+		Psyr_1446	0.18	-0.8
1,636,332	+		Psyr_1446	0.18	+0.1
1,636,333	-		Psyr_1446	0.18	-0.1
1,636,333	-		Psyr_1446	0.18	+1.6
1,636,333	-		Psyr_1446	0.18	-0.2
1,636,336	+		Psyr_1446	0.19	-0.8
1,636,336	+		Psyr_1446	0.19	-1.1
1,636,336	+		Psyr_1446	0.19	-1.8
1,636,336	+		Psyr_1446	0.19	-0.7
1,636,336	+		Psyr_1446	0.19	-0.6
1,636,336	+		Psyr_1446	0.19	-3.3
1,636,336	+		Psyr_1446	0.19	-0.9
1,636,336	+		Psyr_1446	0.19	+2.0
1,636,336	+		Psyr_1446	0.19	+0.3
1,636,336	+		Psyr_1446	0.19	-1.8
1,636,336	+		Psyr_1446	0.19	+1.2
1,636,336	+		Psyr_1446	0.19	-1.4
1,636,336	+		Psyr_1446	0.19	+0.4
1,636,336	+		Psyr_1446	0.19	-1.4
1,636,336	+		Psyr_1446	0.19	+0.3
1,636,336	+		Psyr_1446	0.19	-1.6
1,636,337	-		Psyr_1446	0.19	-0.8
1,636,337	-		Psyr_1446	0.19	+0.0
1,636,337	-		Psyr_1446	0.19	-0.1
1,636,337	-		Psyr_1446	0.19	-0.6
1,636,337	-		Psyr_1446	0.19	-0.4
1,636,337	-		Psyr_1446	0.19	+1.9
1,636,337	-		Psyr_1446	0.19	-1.8
1,636,337	-		Psyr_1446	0.19	-0.5
1,636,337	-		Psyr_1446	0.19	-0.4
1,636,337	-		Psyr_1446	0.19	+1.0
1,636,337	-		Psyr_1446	0.19	-1.0
1,636,337	-		Psyr_1446	0.19	-0.4
1,636,391	+		Psyr_1446	0.27	-0.2
1,636,392	-		Psyr_1446	0.27	+0.2
1,636,392	-		Psyr_1446	0.27	-0.7
1,636,392	-		Psyr_1446	0.27	-0.7
1,636,434	+		Psyr_1446	0.33	-0.4
1,636,516	+		Psyr_1446	0.46	+0.3
1,636,516	+		Psyr_1446	0.46	-1.8
1,636,517	-		Psyr_1446	0.46	-0.5
1,636,517	-		Psyr_1446	0.46	+1.2
1,636,517	-		Psyr_1446	0.46	+1.0
1,636,559	+		Psyr_1446	0.52	+0.4
1,636,560	-		Psyr_1446	0.52	-1.8
1,636,560	-		Psyr_1446	0.52	+1.3
1,636,583	+		Psyr_1446	0.56	-0.6
1,636,583	+		Psyr_1446	0.56	-3.0
1,636,583	+		Psyr_1446	0.56	-1.0
1,636,583	+		Psyr_1446	0.56	+1.2
1,636,583	+		Psyr_1446	0.56	-1.2
1,636,583	+		Psyr_1446	0.56	+1.0
1,636,583	+		Psyr_1446	0.56	-1.2
1,636,583	+		Psyr_1446	0.56	+0.5
1,636,583	+		Psyr_1446	0.56	+0.2
1,636,583	+		Psyr_1446	0.56	-1.4
1,636,583	+		Psyr_1446	0.56	-2.3
1,636,583	+		Psyr_1446	0.56	+0.2
1,636,584	-		Psyr_1446	0.56	+1.0
1,636,584	-		Psyr_1446	0.56	-1.4
1,636,584	-		Psyr_1446	0.56	+1.0
1,636,584	-		Psyr_1446	0.56	+0.9
1,636,584	-		Psyr_1446	0.56	+1.6
1,636,584	-		Psyr_1446	0.56	+0.3
1,636,584	-		Psyr_1446	0.56	-2.6
1,636,584	-		Psyr_1446	0.56	-0.8
1,636,584	-		Psyr_1446	0.56	+1.1
1,636,584	-		Psyr_1446	0.56	-1.3
1,636,584	-		Psyr_1446	0.56	-0.3
1,636,584	-		Psyr_1446	0.56	+0.3
1,636,584	-		Psyr_1446	0.56	+0.5
1,636,584	-		Psyr_1446	0.56	+1.2
1,636,584	-		Psyr_1446	0.56	+2.0
1,636,584	-		Psyr_1446	0.56	+1.7
1,636,584	-		Psyr_1446	0.56	-0.8
1,636,584	-		Psyr_1446	0.56	+0.4
1,636,602	+		Psyr_1446	0.59	+1.2
1,636,661	+		Psyr_1446	0.67	-1.2
1,636,661	+		Psyr_1446	0.67	-1.0
1,636,661	+		Psyr_1446	0.67	+0.4
1,636,662	-		Psyr_1446	0.68	+0.6
1,636,662	-		Psyr_1446	0.68	+3.2
1,636,662	-		Psyr_1446	0.68	+0.8
1,636,662	-		Psyr_1446	0.68	+1.6
1,636,662	-		Psyr_1446	0.68	-0.6
1,636,676	+		Psyr_1446	0.70	-1.3
1,636,676	+		Psyr_1446	0.70	-1.8
1,636,676	+		Psyr_1446	0.70	-0.5
1,636,676	+		Psyr_1446	0.70	-0.8
1,636,676	+		Psyr_1446	0.70	-0.2
1,636,676	+		Psyr_1446	0.70	-0.2
1,636,676	+		Psyr_1446	0.70	-2.4
1,636,677	-		Psyr_1446	0.70	+0.2
1,636,677	-		Psyr_1446	0.70	+0.8
1,636,677	-		Psyr_1446	0.70	-1.4
1,636,677	-		Psyr_1446	0.70	+0.6
1,636,677	-		Psyr_1446	0.70	-0.4
1,636,677	-		Psyr_1446	0.70	+0.1
1,636,677	-		Psyr_1446	0.70	-0.7
1,636,677	-		Psyr_1446	0.70	-1.1
1,636,714	-		Psyr_1446	0.75	-0.8
1,636,795	-		Psyr_1446	0.87	+0.6
1,636,810	+		Psyr_1446	0.90	-0.9
1,636,810	+		Psyr_1446	0.90	+0.8
1,636,810	+		Psyr_1446	0.90	+1.9
1,636,811	-				+1.2
1,636,811	-		Psyr_1446	0.90	+0.4
1,636,811	-		Psyr_1446	0.90	+0.3
1,636,811	-		Psyr_1446	0.90	-1.2
1,636,811	-		Psyr_1446	0.90	+0.5
1,636,811	-		Psyr_1446	0.90	-1.2
1,636,811	-		Psyr_1446	0.90	-0.0
1,636,811	-		Psyr_1446	0.90	+0.4
1,636,811	-		Psyr_1446	0.90	-1.3
1,636,811	-		Psyr_1446	0.90	-0.5
1,636,811	-		Psyr_1446	0.90	-2.2
1,636,811	-		Psyr_1446	0.90	-0.8
1,636,968	+		Psyr_1447	0.24	+0.3
1,636,969	-		Psyr_1447	0.24	-2.8
1,637,062	-		Psyr_1447	0.48	+3.6
1,637,175	-		Psyr_1447	0.76	+0.3
1,637,277	+				-1.5
1,637,314	+				+0.3
1,637,314	+				-1.5
1,637,315	-				-0.1
1,637,315	-				+0.2
1,637,315	-				-2.1
1,637,450	+		Psyr_1448	0.45	-0.6
1,637,450	+		Psyr_1448	0.45	+0.5
1,637,450	+		Psyr_1448	0.45	-0.3
1,637,450	+		Psyr_1448	0.45	+1.0
1,637,450	+		Psyr_1448	0.45	+0.9
1,637,450	+		Psyr_1448	0.45	+0.1
1,637,450	+		Psyr_1448	0.45	-0.3
1,637,450	+		Psyr_1448	0.45	+0.4
1,637,450	+		Psyr_1448	0.45	+0.2
1,637,450	+		Psyr_1448	0.45	-0.8
1,637,451	-		Psyr_1448	0.46	-1.5
1,637,451	-		Psyr_1448	0.46	-0.1
1,637,451	-		Psyr_1448	0.46	+0.3
1,637,451	-		Psyr_1448	0.46	-1.2
1,637,485	+		Psyr_1448	0.55	+1.0
1,637,485	+		Psyr_1448	0.55	-1.3
1,637,485	+		Psyr_1448	0.55	+0.1
1,637,510	+		Psyr_1448	0.62	-0.8
1,637,510	+		Psyr_1448	0.62	+0.7
1,637,511	-		Psyr_1448	0.62	+2.7
1,637,561	+		Psyr_1448	0.75	-0.1
1,637,561	+		Psyr_1448	0.75	-0.1
1,637,561	+		Psyr_1448	0.75	+1.6
1,637,655	+				-1.0
1,637,655	+				+0.2
1,637,694	+				-1.6
1,637,694	+				-1.2
1,637,745	+		Psyr_1449	0.31	+0.5
1,637,745	+		Psyr_1449	0.31	-0.8
1,637,775	-		Psyr_1449	0.43	-0.4
1,637,775	-		Psyr_1449	0.43	+1.4
1,637,782	+		Psyr_1449	0.46	+0.1
1,637,782	+		Psyr_1449	0.46	-2.9
1,637,782	+		Psyr_1449	0.46	+0.9
1,637,803	+		Psyr_1449	0.55	+0.1