Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1183

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
1,335,778	+		Psyr_1182	0.32	-0.4
1,335,784	+		Psyr_1182	0.33	+1.0
1,335,785	-		Psyr_1182	0.33	-0.8
1,335,785	-		Psyr_1182	0.33	+0.8
1,335,936	-		Psyr_1182	0.49	-0.0
1,335,936	-		Psyr_1182	0.49	-0.7
1,335,936	-		Psyr_1182	0.49	+0.6
1,335,953	+		Psyr_1182	0.51	+1.1
1,335,954	-		Psyr_1182	0.51	+1.7
1,336,055	-		Psyr_1182	0.62	+0.3
1,336,055	-		Psyr_1182	0.62	+0.4
1,336,077	+		Psyr_1182	0.64	-0.9
1,336,078	-		Psyr_1182	0.64	+0.0
1,336,078	-		Psyr_1182	0.64	+0.5
1,336,131	+		Psyr_1182	0.70	-1.4
1,336,131	+		Psyr_1182	0.70	-1.3
1,336,144	+		Psyr_1182	0.71	+0.5
1,336,204	+		Psyr_1182	0.78	+0.9
1,336,233	+		Psyr_1182	0.81	-0.0
1,336,233	+		Psyr_1182	0.81	-1.1
1,336,234	-		Psyr_1182	0.81	+2.0
1,336,281	+		Psyr_1182	0.86	-2.7
1,336,281	+		Psyr_1182	0.86	-0.9
1,336,281	+		Psyr_1182	0.86	-1.7
1,336,282	-		Psyr_1182	0.86	+0.4
1,336,363	+				-0.6
1,336,363	+				+0.8
1,336,363	+				-1.9
1,336,363	+				+0.4
1,336,363	+				-0.7
1,336,363	+				+0.4
1,336,363	+				-0.1
1,336,363	+				-0.7
1,336,364	-				+0.1
1,336,364	-				-0.0
1,336,364	-				+0.3
1,336,364	-				-1.2
1,336,364	-				-0.2
1,336,364	-				-1.3
1,336,364	-				+1.3
1,336,364	-				-1.8
1,336,364	-				-1.6
1,336,364	-				-0.7
1,336,364	-				-1.6
1,336,483	-				+1.3
1,336,483	-				-0.4
1,336,483	-				+0.3
1,336,497	-				-1.4
1,336,507	+				-0.3
1,336,508	-				+0.1
1,336,508	-				-0.3
1,336,735	+				+3.5
1,336,735	+				+0.7
1,336,735	+				+0.3
1,336,735	+				-0.1
1,336,735	+				-0.1
1,336,735	+				+0.5
1,336,735	+				-2.3
1,336,736	-				-0.9
1,336,736	-				-1.1
1,336,736	-				-2.4
1,336,736	-				+0.4
1,336,736	-				+2.0
1,336,736	-				-1.7
1,336,736	-				-1.7
1,336,743	-				+0.8
1,336,813	-				-0.7
1,336,912	+		Psyr_1183	0.11	+0.4
1,336,912	+		Psyr_1183	0.11	+1.0
1,336,912	+		Psyr_1183	0.11	-0.1
1,336,912	+		Psyr_1183	0.11	+1.4
1,336,912	+		Psyr_1183	0.11	+0.5
1,336,913	-		Psyr_1183	0.11	+0.5
1,336,913	-		Psyr_1183	0.11	+1.7
1,336,913	-		Psyr_1183	0.11	-0.5
1,336,913	-		Psyr_1183	0.11	-0.5
1,337,151	+		Psyr_1183	0.27	-1.6
1,337,151	+		Psyr_1183	0.27	+1.2
1,337,151	+		Psyr_1183	0.27	-0.6
1,337,151	+		Psyr_1183	0.27	+1.3
1,337,151	+		Psyr_1183	0.27	+1.3
1,337,151	+		Psyr_1183	0.27	+1.3
1,337,151	+		Psyr_1183	0.27	+0.4
1,337,151	+		Psyr_1183	0.27	+0.5
1,337,152	-		Psyr_1183	0.27	-0.7
1,337,152	-		Psyr_1183	0.27	-0.6
1,337,152	-		Psyr_1183	0.27	-0.1
1,337,152	-		Psyr_1183	0.27	+1.3
1,337,152	-		Psyr_1183	0.27	-1.0
1,337,292	+		Psyr_1183	0.37	-2.6
1,337,403	+		Psyr_1183	0.44	-0.7
1,337,404	-		Psyr_1183	0.44	-1.1
1,337,534	+		Psyr_1183	0.53	+0.7
1,337,534	+		Psyr_1183	0.53	+0.6
1,337,534	+		Psyr_1183	0.53	+0.0
1,337,535	-		Psyr_1183	0.54	+0.0
1,337,647	-		Psyr_1183	0.61	-0.2
1,337,895	-		Psyr_1183	0.78	-0.2
1,337,988	-		Psyr_1183	0.85	-1.3
1,338,021	+		Psyr_1183	0.87	+0.1
1,338,021	+		Psyr_1183	0.87	-0.0
1,338,021	+		Psyr_1183	0.87	-0.3
1,338,021	+		Psyr_1183	0.87	+1.5
1,338,021	+		Psyr_1183	0.87	+0.5
1,338,021	+		Psyr_1183	0.87	+0.0
1,338,021	+		Psyr_1183	0.87	+0.3
1,338,021	+		Psyr_1183	0.87	+0.7
1,338,021	+		Psyr_1183	0.87	-0.4
1,338,021	+		Psyr_1183	0.87	+0.7
1,338,021	+		Psyr_1183	0.87	-2.9
1,338,021	+		Psyr_1183	0.87	-1.2
1,338,021	+		Psyr_1183	0.87	+1.3
1,338,021	+		Psyr_1183	0.87	+0.6
1,338,022	-		Psyr_1183	0.87	-0.1
1,338,022	-		Psyr_1183	0.87	+1.1
1,338,022	-		Psyr_1183	0.87	+2.3
1,338,022	-		Psyr_1183	0.87	-0.7
1,338,022	-		Psyr_1183	0.87	-0.9
1,338,022	-		Psyr_1183	0.87	+1.8
1,338,022	-		Psyr_1183	0.87	-2.9
1,338,022	-		Psyr_1183	0.87	+1.5
1,338,022	-		Psyr_1183	0.87	+0.5
1,338,022	-		Psyr_1183	0.87	-2.2
1,338,022	-		Psyr_1183	0.87	+0.2
1,338,022	-		Psyr_1183	0.87	-0.1
1,338,022	-		Psyr_1183	0.87	+0.1
1,338,025	+		Psyr_1183	0.87	-0.5
1,338,025	+		Psyr_1183	0.87	+1.1
1,338,025	+		Psyr_1183	0.87	+1.3
1,338,025	+		Psyr_1183	0.87	+0.7
1,338,025	+		Psyr_1183	0.87	-2.3
1,338,025	+		Psyr_1183	0.87	+0.6
1,338,026	-		Psyr_1183	0.87	-0.0
1,338,026	-		Psyr_1183	0.87	+0.9
1,338,026	-		Psyr_1183	0.87	-0.5
1,338,026	-		Psyr_1183	0.87	+0.0
1,338,026	-		Psyr_1183	0.87	-0.9
1,338,026	-		Psyr_1183	0.87	+1.7
1,338,026	-		Psyr_1183	0.87	+0.8
1,338,026	-		Psyr_1183	0.87	-0.7
1,338,026	-		Psyr_1183	0.87	+0.0
1,338,026	-		Psyr_1183	0.87	+0.4
1,338,026	-		Psyr_1183	0.87	+1.7
1,338,026	-		Psyr_1183	0.87	+0.9
1,338,026	-		Psyr_1183	0.87	-1.7
1,338,026	-		Psyr_1183	0.87	+0.6
1,338,026	-		Psyr_1183	0.87	+3.9
1,338,115	+				-1.3
1,338,115	+				+1.4
1,338,115	+				+0.2
1,338,115	+				+0.2
1,338,116	-				-0.4
1,338,116	-				+1.1
1,338,116	-				+0.3
1,338,116	-				+0.8
1,338,207	+				-1.0
1,338,207	+				+0.4
1,338,208	-				-0.1
1,338,282	+				+0.4
1,338,282	+				-0.2
1,338,282	+				+2.2
1,338,282	+				-0.7
1,338,282	+				+0.8
1,338,282	+				+0.6
1,338,282	+				-0.7
1,338,282	+				-0.2
1,338,282	+				-0.5
1,338,282	+				-1.0
1,338,282	+				-1.9
1,338,283	-				-2.9
1,338,283	-				-0.1
1,338,283	-				-0.5
1,338,283	-				+1.1
1,338,283	-				-0.3
1,338,283	-				-1.1
1,338,283	-				+0.3
1,338,283	-				-1.5
1,338,283	-				+0.2
1,338,283	-				-0.1
1,338,283	-				-2.2
1,338,334	-				+0.5
1,338,671	-		Psyr_1184	0.29	+1.3
1,338,928	+		Psyr_1184	0.48	+0.8
1,339,074	+		Psyr_1184	0.59	+1.3
1,339,074	+		Psyr_1184	0.59	+2.5
1,339,074	+		Psyr_1184	0.59	-0.1
1,339,074	+		Psyr_1184	0.59	+1.0
1,339,074	+		Psyr_1184	0.59	+2.3
1,339,074	+		Psyr_1184	0.59	-2.2
1,339,074	+		Psyr_1184	0.59	+0.3
1,339,074	+		Psyr_1184	0.59	-0.1
1,339,074	+		Psyr_1184	0.59	-0.3
1,339,074	+		Psyr_1184	0.59	-0.4
1,339,075	-		Psyr_1184	0.59	-1.5
1,339,075	-		Psyr_1184	0.59	+0.5
1,339,075	-		Psyr_1184	0.59	+0.3
1,339,075	-		Psyr_1184	0.59	+0.9
1,339,075	-		Psyr_1184	0.59	-0.2
1,339,075	-		Psyr_1184	0.59	-0.4
1,339,075	-		Psyr_1184	0.59	+1.8
1,339,075	-		Psyr_1184	0.59	+0.6
1,339,075	-		Psyr_1184	0.59	+0.6
1,339,075	-		Psyr_1184	0.59	-0.2
1,339,075	-		Psyr_1184	0.59	-0.6
1,339,075	-		Psyr_1184	0.59	-2.5
1,339,075	-		Psyr_1184	0.59	-0.9
1,339,075	-		Psyr_1184	0.59	+0.2
1,339,075	-		Psyr_1184	0.59	-3.1
1,339,075	-		Psyr_1184	0.59	-0.7
1,339,075	-		Psyr_1184	0.59	+0.1
1,339,078	+		Psyr_1184	0.59	-0.6
1,339,079	-		Psyr_1184	0.59	-0.5
1,339,111	+		Psyr_1184	0.62	-0.8
1,339,111	+		Psyr_1184	0.62	-0.8
1,339,145	-		Psyr_1184	0.64	-0.3
1,339,145	-		Psyr_1184	0.64	+0.4
1,339,181	-		Psyr_1184	0.67	-0.7