Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1105

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
1,249,435	+		Psyr_1103	0.41	+0.3
1,249,436	-		Psyr_1103	0.42	+0.1
1,249,436	-		Psyr_1103	0.42	+1.4
1,249,436	-		Psyr_1103	0.42	-0.0
1,249,436	-		Psyr_1103	0.42	+0.3
1,249,436	-		Psyr_1103	0.42	-0.1
1,249,569	+		Psyr_1103	0.71	+0.3
1,249,569	+		Psyr_1103	0.71	-0.0
1,249,570	-		Psyr_1103	0.71	+0.3
1,249,603	-		Psyr_1103	0.78	+3.3
1,249,636	+		Psyr_1103	0.85	-0.8
1,249,636	+		Psyr_1103	0.85	-1.9
1,249,636	+		Psyr_1103	0.85	+1.0
1,249,636	+		Psyr_1103	0.85	-0.8
1,249,636	+		Psyr_1103	0.85	+0.2
1,249,637	-		Psyr_1103	0.85	-0.9
1,249,637	-		Psyr_1103	0.85	-0.5
1,249,637	-		Psyr_1103	0.85	+2.3
1,249,650	+		Psyr_1103	0.88	-0.1
1,249,681	-				+1.0
1,250,136	+		Psyr_1104	0.71	-0.1
1,250,137	-		Psyr_1104	0.71	-0.0
1,250,167	-		Psyr_1104	0.76	-0.1
1,250,167	-		Psyr_1104	0.76	-1.2
1,250,191	-		Psyr_1104	0.80	+0.6
1,250,317	+				+0.9
1,250,318	-				+1.3
1,250,318	-				+0.5
1,250,349	+				-0.8
1,250,349	+				-2.0
1,250,350	-				-1.3
1,250,350	-				-0.8
1,250,559	-				+0.9
1,250,579	+				+0.7
1,250,579	+				-0.0
1,250,580	-				-0.5
1,250,618	+				+0.7
1,250,618	+				+0.3
1,250,618	+				+0.1
1,250,618	+				+0.7
1,250,618	+				-1.0
1,250,618	+				+0.1
1,250,618	+				+1.2
1,250,618	+				+1.0
1,250,618	+				-0.4
1,250,619	-				-0.3
1,250,619	-				-2.0
1,250,619	-				+2.7
1,250,619	-				+0.3
1,250,619	-				+0.0
1,250,843	+		Psyr_1105	0.16	-0.4
1,250,844	-		Psyr_1105	0.16	+0.9
1,250,941	+		Psyr_1105	0.20	-2.5
1,250,941	+		Psyr_1105	0.20	-0.4
1,250,941	+		Psyr_1105	0.20	+0.8
1,250,941	+		Psyr_1105	0.20	+0.9
1,250,941	+		Psyr_1105	0.20	+0.6
1,250,941	+		Psyr_1105	0.20	+1.0
1,250,941	+		Psyr_1105	0.20	+0.1
1,250,942	-		Psyr_1105	0.20	+1.1
1,250,942	-		Psyr_1105	0.20	-0.2
1,250,942	-		Psyr_1105	0.20	+0.7
1,250,942	-		Psyr_1105	0.20	-1.7
1,250,942	-		Psyr_1105	0.20	+0.0
1,251,011	+		Psyr_1105	0.22	-0.1
1,251,020	+		Psyr_1105	0.23	+0.8
1,251,020	+		Psyr_1105	0.23	-0.0
1,251,020	+		Psyr_1105	0.23	-0.8
1,251,020	+		Psyr_1105	0.23	-0.1
1,251,021	-		Psyr_1105	0.23	+1.6
1,251,021	-		Psyr_1105	0.23	+1.5
1,251,194	+		Psyr_1105	0.30	+0.5
1,251,204	-		Psyr_1105	0.30	+0.3
1,251,204	-		Psyr_1105	0.30	+0.9
1,251,212	+		Psyr_1105	0.30	+1.0
1,251,212	+		Psyr_1105	0.30	-0.4
1,251,212	+		Psyr_1105	0.30	+0.2
1,251,212	+		Psyr_1105	0.30	+0.3
1,251,212	+		Psyr_1105	0.30	+1.3
1,251,213	-		Psyr_1105	0.30	-0.4
1,251,213	-		Psyr_1105	0.30	-0.3
1,251,230	+		Psyr_1105	0.31	+0.2
1,251,230	+		Psyr_1105	0.31	-0.5
1,251,230	+		Psyr_1105	0.31	+0.5
1,251,231	-		Psyr_1105	0.31	+0.4
1,251,231	-		Psyr_1105	0.31	+1.9
1,251,231	-		Psyr_1105	0.31	+0.5
1,251,231	-		Psyr_1105	0.31	-1.9
1,251,422	+		Psyr_1105	0.38	-0.6
1,251,423	-		Psyr_1105	0.38	-1.0
1,251,423	-		Psyr_1105	0.38	-0.5
1,251,579	-		Psyr_1105	0.44	-0.4
1,251,656	+		Psyr_1105	0.47	-0.3
1,251,702	-		Psyr_1105	0.49	-0.3
1,251,702	-		Psyr_1105	0.49	+0.2
1,251,702	-		Psyr_1105	0.49	+3.6
1,251,740	+		Psyr_1105	0.51	-0.5
1,251,741	-		Psyr_1105	0.51	+0.3
1,251,848	+		Psyr_1105	0.55	+0.9
1,251,848	+		Psyr_1105	0.55	+1.4
1,251,848	+		Psyr_1105	0.55	-0.7
1,251,848	+		Psyr_1105	0.55	+2.3
1,251,848	+		Psyr_1105	0.55	+2.2
1,251,848	+		Psyr_1105	0.55	-1.5
1,251,849	-		Psyr_1105	0.55	-0.1
1,251,849	-		Psyr_1105	0.55	+1.2
1,251,849	-		Psyr_1105	0.55	+0.6
1,251,849	-		Psyr_1105	0.55	-0.3
1,251,849	-		Psyr_1105	0.55	+0.9
1,251,849	-		Psyr_1105	0.55	-0.4
1,251,849	-		Psyr_1105	0.55	-2.5
1,251,849	-		Psyr_1105	0.55	+1.7
1,251,849	-		Psyr_1105	0.55	+1.4
1,251,923	+		Psyr_1105	0.58	+0.6
1,251,923	+		Psyr_1105	0.58	-2.2
1,251,924	-		Psyr_1105	0.58	+1.1
1,251,932	+		Psyr_1105	0.58	+1.3
1,251,962	+		Psyr_1105	0.59	-0.6
1,252,232	+		Psyr_1105	0.70	+0.3
1,252,232	+		Psyr_1105	0.70	+1.3
1,252,232	+		Psyr_1105	0.70	+0.3
1,252,232	+		Psyr_1105	0.70	+0.4
1,252,233	-		Psyr_1105	0.70	+0.6
1,252,233	-		Psyr_1105	0.70	+1.2
1,252,233	-		Psyr_1105	0.70	+0.4
1,252,233	-		Psyr_1105	0.70	+1.3
1,252,235	+		Psyr_1105	0.70	-2.6
1,252,235	+		Psyr_1105	0.70	+0.3
1,252,235	+		Psyr_1105	0.70	+1.0
1,252,235	+		Psyr_1105	0.70	+0.3
1,252,235	+		Psyr_1105	0.70	+0.6
1,252,236	-		Psyr_1105	0.70	+0.9
1,252,236	-		Psyr_1105	0.70	-0.5
1,252,236	-		Psyr_1105	0.70	+0.7
1,252,236	-		Psyr_1105	0.70	+0.9
1,252,236	-		Psyr_1105	0.70	+0.4
1,252,328	+		Psyr_1105	0.74	-0.5
1,252,328	+		Psyr_1105	0.74	-0.6
1,252,328	+		Psyr_1105	0.74	+0.5
1,252,328	+		Psyr_1105	0.74	+0.9
1,252,328	+		Psyr_1105	0.74	-0.6
1,252,328	+		Psyr_1105	0.74	-1.9
1,252,328	+		Psyr_1105	0.74	+0.8
1,252,328	+		Psyr_1105	0.74	+0.2
1,252,328	+		Psyr_1105	0.74	-0.1
1,252,329	-		Psyr_1105	0.74	-0.5
1,252,329	-		Psyr_1105	0.74	+0.0
1,252,329	-		Psyr_1105	0.74	-1.5
1,252,329	-		Psyr_1105	0.74	-0.6
1,252,329	-		Psyr_1105	0.74	+0.5
1,252,329	-		Psyr_1105	0.74	-0.7
1,252,329	-		Psyr_1105	0.74	+0.1
1,252,329	-		Psyr_1105	0.74	-0.7
1,252,329	-		Psyr_1105	0.74	-1.9
1,252,329	-		Psyr_1105	0.74	-0.1
1,252,431	+		Psyr_1105	0.78	-0.3
1,252,431	+		Psyr_1105	0.78	-0.7
1,252,432	-		Psyr_1105	0.78	-0.7
1,252,432	-		Psyr_1105	0.78	+1.1
1,252,433	+		Psyr_1105	0.78	+0.6
1,252,433	+		Psyr_1105	0.78	+0.1
1,252,434	-		Psyr_1105	0.78	+1.2
1,252,434	-		Psyr_1105	0.78	-0.2
1,252,546	+		Psyr_1105	0.82	-0.1
1,252,546	+		Psyr_1105	0.82	+0.1
1,252,547	-		Psyr_1105	0.82	+0.5
1,252,547	-		Psyr_1105	0.82	-1.5
1,252,547	-		Psyr_1105	0.82	-0.3
1,252,789	+				-0.5
1,252,789	+				-0.4
1,252,789	+				-0.3
1,252,790	-				-0.6
1,252,863	-				+0.2
1,252,863	-				-0.1
1,252,891	-				-0.3
1,252,891	-				-0.5
1,252,965	+				+1.3
1,252,965	+				+1.5
1,253,041	+				+0.5
1,253,041	+				+1.9
1,253,042	-				+0.9
1,253,042	-				-0.2
1,253,048	+				-0.9
1,253,049	-				-0.1
1,253,049	-				+1.9
1,253,049	-				+1.8
1,253,091	+				+1.3
1,253,092	-				+0.1
1,253,227	-				-0.9
1,253,287	-		Psyr_1106	0.16	+1.2
1,253,310	-		Psyr_1106	0.18	-0.4
1,253,310	-		Psyr_1106	0.18	+1.3
1,253,336	+		Psyr_1106	0.21	+0.9
1,253,336	+		Psyr_1106	0.21	+0.3
1,253,495	+		Psyr_1106	0.38	+1.1
1,253,496	-		Psyr_1106	0.38	-0.8
1,253,496	-		Psyr_1106	0.38	-0.1
1,253,496	-		Psyr_1106	0.38	-2.0
1,253,625	+		Psyr_1106	0.51	-1.0
1,253,625	+		Psyr_1106	0.51	-1.7
1,253,626	-		Psyr_1106	0.51	+1.5
1,253,626	-		Psyr_1106	0.51	-1.4
1,253,626	-		Psyr_1106	0.51	+0.1