Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0868 and Psyr_0869 are separated by 8 nucleotides Psyr_0869 and Psyr_0870 are separated by 81 nucleotides Psyr_0870 and Psyr_0871 are separated by 303 nucleotides
Psyr_0868: Psyr_0868 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 989,205 to 990,845
_0868
Psyr_0869: Psyr_0869 - GCN5-related N-acetyltransferase, at 990,854 to 991,291
_0869
Psyr_0870: Psyr_0870 - GGDEF domain protein, at 991,373 to 992,566
_0870
Psyr_0871: Psyr_0871 - PAS, at 992,870 to 994,183
_0871
Position (kb) 991
992
993 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 990.827 kb on - strand at 990.848 kb on + strand at 990.848 kb on + strand at 990.848 kb on + strand at 990.848 kb on + strand at 990.848 kb on + strand at 990.848 kb on + strand at 990.848 kb on + strand at 990.848 kb on + strand at 990.849 kb on - strand at 990.849 kb on - strand at 990.849 kb on - strand at 990.849 kb on - strand at 990.849 kb on - strand at 990.849 kb on - strand at 990.849 kb on - strand at 990.849 kb on - strand at 990.849 kb on - strand at 991.325 kb on + strand at 991.325 kb on + strand at 991.326 kb on - strand at 991.326 kb on - strand at 991.326 kb on - strand at 991.393 kb on + strand at 991.393 kb on + strand at 991.393 kb on + strand at 991.393 kb on + strand at 991.394 kb on - strand at 991.394 kb on - strand at 991.416 kb on + strand at 991.700 kb on - strand, within Psyr_0870 at 991.719 kb on + strand, within Psyr_0870 at 991.719 kb on + strand, within Psyr_0870 at 991.719 kb on + strand, within Psyr_0870 at 991.719 kb on + strand, within Psyr_0870 at 991.719 kb on + strand, within Psyr_0870 at 991.719 kb on + strand, within Psyr_0870 at 991.719 kb on + strand, within Psyr_0870 at 991.720 kb on - strand, within Psyr_0870 at 991.720 kb on - strand, within Psyr_0870 at 991.720 kb on - strand, within Psyr_0870 at 991.720 kb on - strand, within Psyr_0870 at 991.720 kb on - strand, within Psyr_0870 at 991.720 kb on - strand, within Psyr_0870 at 991.720 kb on - strand, within Psyr_0870 at 991.731 kb on + strand, within Psyr_0870 at 991.731 kb on + strand, within Psyr_0870 at 991.732 kb on - strand, within Psyr_0870 at 991.732 kb on - strand, within Psyr_0870 at 991.917 kb on + strand, within Psyr_0870 at 991.917 kb on + strand, within Psyr_0870 at 991.917 kb on + strand, within Psyr_0870 at 991.918 kb on - strand, within Psyr_0870 at 991.947 kb on + strand, within Psyr_0870 at 991.947 kb on + strand, within Psyr_0870 at 991.947 kb on + strand, within Psyr_0870 at 991.947 kb on + strand, within Psyr_0870 at 991.948 kb on - strand, within Psyr_0870 at 991.948 kb on - strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.034 kb on + strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.035 kb on - strand, within Psyr_0870 at 992.066 kb on + strand, within Psyr_0870 at 992.066 kb on + strand, within Psyr_0870 at 992.066 kb on + strand, within Psyr_0870 at 992.066 kb on + strand, within Psyr_0870 at 992.066 kb on + strand, within Psyr_0870 at 992.067 kb on - strand, within Psyr_0870 at 992.067 kb on - strand, within Psyr_0870 at 992.067 kb on - strand, within Psyr_0870 at 992.067 kb on - strand, within Psyr_0870 at 992.067 kb on - strand, within Psyr_0870 at 992.118 kb on + strand, within Psyr_0870 at 992.119 kb on - strand, within Psyr_0870 at 992.148 kb on + strand, within Psyr_0870 at 992.211 kb on - strand, within Psyr_0870 at 992.211 kb on - strand, within Psyr_0870 at 992.325 kb on + strand, within Psyr_0870 at 992.325 kb on + strand, within Psyr_0870 at 992.325 kb on + strand, within Psyr_0870 at 992.326 kb on - strand, within Psyr_0870 at 992.326 kb on - strand, within Psyr_0870 at 992.326 kb on - strand, within Psyr_0870 at 992.326 kb on - strand, within Psyr_0870 at 992.345 kb on + strand, within Psyr_0870 at 992.345 kb on + strand, within Psyr_0870 at 992.376 kb on + strand, within Psyr_0870 at 992.376 kb on + strand, within Psyr_0870 at 992.376 kb on + strand, within Psyr_0870 at 992.376 kb on + strand, within Psyr_0870 at 992.376 kb on + strand, within Psyr_0870 at 992.377 kb on - strand, within Psyr_0870 at 992.377 kb on - strand, within Psyr_0870 at 992.377 kb on - strand, within Psyr_0870 at 992.446 kb on - strand, within Psyr_0870 at 992.582 kb on + strand at 992.583 kb on - strand at 992.583 kb on - strand at 992.597 kb on + strand at 992.597 kb on + strand at 992.597 kb on + strand at 992.597 kb on + strand at 992.597 kb on + strand at 992.597 kb on + strand at 992.598 kb on - strand at 992.598 kb on - strand at 992.598 kb on - strand at 992.598 kb on - strand at 992.598 kb on - strand at 992.598 kb on - strand at 992.598 kb on - strand at 992.598 kb on - strand at 992.634 kb on - strand at 992.781 kb on + strand at 992.781 kb on + strand at 992.781 kb on + strand at 992.781 kb on + strand at 992.781 kb on + strand at 992.782 kb on - strand at 992.824 kb on + strand at 992.838 kb on + strand at 992.838 kb on + strand at 992.839 kb on - strand at 992.839 kb on - strand at 992.840 kb on + strand at 992.840 kb on + strand at 992.840 kb on + strand at 992.840 kb on + strand at 992.840 kb on + strand at 992.840 kb on + strand at 992.840 kb on + strand at 992.840 kb on + strand at 992.840 kb on + strand at 992.840 kb on + strand at 992.840 kb on + strand at 992.841 kb on - strand at 992.841 kb on - strand at 992.841 kb on - strand at 992.841 kb on - strand at 992.841 kb on - strand at 992.841 kb on - strand at 992.841 kb on - strand at 992.842 kb on + strand at 992.842 kb on + strand at 992.842 kb on + strand at 992.842 kb on + strand at 992.842 kb on + strand at 992.842 kb on + strand at 992.842 kb on + strand at 992.842 kb on + strand at 992.842 kb on + strand at 992.842 kb on + strand at 992.842 kb on + strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.843 kb on - strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.846 kb on + strand at 992.847 kb on - strand at 992.847 kb on - strand at 992.847 kb on - strand at 992.847 kb on - strand at 992.847 kb on - strand at 992.847 kb on - strand at 992.847 kb on - strand at 992.898 kb on + strand at 992.899 kb on - strand at 992.899 kb on - strand at 992.919 kb on + strand at 992.919 kb on + strand at 992.920 kb on - strand at 992.920 kb on - strand at 992.920 kb on - strand at 992.927 kb on + strand at 992.928 kb on - strand at 992.988 kb on - strand at 992.988 kb on - strand at 993.022 kb on + strand, within Psyr_0871 at 993.083 kb on + strand, within Psyr_0871 at 993.083 kb on + strand, within Psyr_0871 at 993.083 kb on + strand, within Psyr_0871 at 993.083 kb on + strand, within Psyr_0871 at 993.083 kb on + strand, within Psyr_0871 at 993.083 kb on + strand, within Psyr_0871 at 993.083 kb on + strand, within Psyr_0871 at 993.083 kb on + strand, within Psyr_0871 at 993.083 kb on + strand, within Psyr_0871 at 993.084 kb on - strand, within Psyr_0871 at 993.084 kb on - strand, within Psyr_0871 at 993.084 kb on - strand, within Psyr_0871 at 993.084 kb on - strand, within Psyr_0871 at 993.084 kb on - strand, within Psyr_0871 at 993.084 kb on - strand, within Psyr_0871 at 993.084 kb on - strand, within Psyr_0871 at 993.084 kb on - strand, within Psyr_0871 at 993.251 kb on + strand, within Psyr_0871 at 993.305 kb on - strand, within Psyr_0871 at 993.422 kb on - strand, within Psyr_0871 at 993.530 kb on - strand, within Psyr_0871 at 993.535 kb on + strand, within Psyr_0871
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 990,827 - +0.1 990,848 + -1.8 990,848 + +1.0 990,848 + +0.9 990,848 + -2.2 990,848 + +1.7 990,848 + +0.4 990,848 + +0.9 990,848 + +1.4 990,849 - +1.6 990,849 - +0.4 990,849 - -0.0 990,849 - +0.6 990,849 - +0.9 990,849 - -0.1 990,849 - -0.6 990,849 - +0.0 990,849 - -0.9 991,325 + +0.9 991,325 + +0.2 991,326 - +1.4 991,326 - -0.5 991,326 - -0.2 991,393 + +1.0 991,393 + +0.2 991,393 + -2.0 991,393 + -1.4 991,394 - +0.4 991,394 - -0.6 991,416 + -0.1 991,700 - Psyr_0870 0.27 +0.4 991,719 + Psyr_0870 0.29 -0.5 991,719 + Psyr_0870 0.29 -3.0 991,719 + Psyr_0870 0.29 +1.3 991,719 + Psyr_0870 0.29 +2.5 991,719 + Psyr_0870 0.29 +1.9 991,719 + Psyr_0870 0.29 +0.2 991,719 + Psyr_0870 0.29 -0.8 991,720 - Psyr_0870 0.29 -0.8 991,720 - Psyr_0870 0.29 +0.6 991,720 - Psyr_0870 0.29 -0.0 991,720 - Psyr_0870 0.29 +0.5 991,720 - Psyr_0870 0.29 -0.6 991,720 - Psyr_0870 0.29 -1.9 991,720 - Psyr_0870 0.29 -1.6 991,731 + Psyr_0870 0.30 +2.9 991,731 + Psyr_0870 0.30 +1.6 991,732 - Psyr_0870 0.30 -2.0 991,732 - Psyr_0870 0.30 +0.6 991,917 + Psyr_0870 0.46 -0.6 991,917 + Psyr_0870 0.46 +0.7 991,917 + Psyr_0870 0.46 -1.2 991,918 - Psyr_0870 0.46 +0.4 991,947 + Psyr_0870 0.48 +0.1 991,947 + Psyr_0870 0.48 +0.4 991,947 + Psyr_0870 0.48 -0.6 991,947 + Psyr_0870 0.48 +0.9 991,948 - Psyr_0870 0.48 +2.2 991,948 - Psyr_0870 0.48 -0.2 992,034 + Psyr_0870 0.55 +0.0 992,034 + Psyr_0870 0.55 -2.6 992,034 + Psyr_0870 0.55 -1.3 992,034 + Psyr_0870 0.55 +0.5 992,034 + Psyr_0870 0.55 +0.2 992,034 + Psyr_0870 0.55 -0.7 992,034 + Psyr_0870 0.55 +0.5 992,034 + Psyr_0870 0.55 +1.6 992,034 + Psyr_0870 0.55 +2.0 992,034 + Psyr_0870 0.55 -0.8 992,034 + Psyr_0870 0.55 +0.7 992,034 + Psyr_0870 0.55 +2.9 992,034 + Psyr_0870 0.55 -1.3 992,034 + Psyr_0870 0.55 +1.5 992,034 + Psyr_0870 0.55 -0.5 992,034 + Psyr_0870 0.55 -2.3 992,034 + Psyr_0870 0.55 +3.9 992,034 + Psyr_0870 0.55 +0.1 992,035 - Psyr_0870 0.55 +0.4 992,035 - Psyr_0870 0.55 +0.8 992,035 - Psyr_0870 0.55 +0.3 992,035 - Psyr_0870 0.55 -0.2 992,035 - Psyr_0870 0.55 +0.4 992,035 - Psyr_0870 0.55 +2.1 992,035 - Psyr_0870 0.55 +0.3 992,035 - Psyr_0870 0.55 -1.3 992,035 - Psyr_0870 0.55 -1.0 992,035 - Psyr_0870 0.55 +1.0 992,035 - Psyr_0870 0.55 -0.1 992,035 - Psyr_0870 0.55 +0.4 992,035 - Psyr_0870 0.55 -0.2 992,035 - Psyr_0870 0.55 +0.7 992,035 - Psyr_0870 0.55 +0.2 992,066 + Psyr_0870 0.58 +1.4 992,066 + Psyr_0870 0.58 +1.1 992,066 + Psyr_0870 0.58 +0.8 992,066 + Psyr_0870 0.58 +3.8 992,066 + Psyr_0870 0.58 +3.2 992,067 - Psyr_0870 0.58 -0.3 992,067 - Psyr_0870 0.58 +0.5 992,067 - Psyr_0870 0.58 -0.8 992,067 - Psyr_0870 0.58 -0.6 992,067 - Psyr_0870 0.58 +1.1 992,118 + Psyr_0870 0.62 +1.0 992,119 - Psyr_0870 0.62 -0.1 992,148 + Psyr_0870 0.65 +0.6 992,211 - Psyr_0870 0.70 +0.1 992,211 - Psyr_0870 0.70 +0.4 992,325 + Psyr_0870 0.80 -0.1 992,325 + Psyr_0870 0.80 +0.9 992,325 + Psyr_0870 0.80 +2.3 992,326 - Psyr_0870 0.80 -0.2 992,326 - Psyr_0870 0.80 +1.9 992,326 - Psyr_0870 0.80 +0.9 992,326 - Psyr_0870 0.80 -0.8 992,345 + Psyr_0870 0.81 +0.5 992,345 + Psyr_0870 0.81 +0.6 992,376 + Psyr_0870 0.84 -0.4 992,376 + Psyr_0870 0.84 -1.8 992,376 + Psyr_0870 0.84 +0.7 992,376 + Psyr_0870 0.84 +0.1 992,376 + Psyr_0870 0.84 -0.3 992,377 - Psyr_0870 0.84 +0.7 992,377 - Psyr_0870 0.84 +0.8 992,377 - Psyr_0870 0.84 +0.3 992,446 - Psyr_0870 0.90 -0.1 992,582 + -0.5 992,583 - -0.8 992,583 - +0.7 992,597 + +0.3 992,597 + -1.2 992,597 + -0.5 992,597 + +1.2 992,597 + -0.1 992,597 + -0.6 992,598 - +0.2 992,598 - +0.2 992,598 - -0.5 992,598 - +0.9 992,598 - -1.5 992,598 - -2.8 992,598 - -0.1 992,598 - -1.2 992,634 - +0.1 992,781 + -2.5 992,781 + -1.8 992,781 + -0.7 992,781 + -0.5 992,781 + -0.4 992,782 - -0.6 992,824 + -0.2 992,838 + +1.1 992,838 + +1.6 992,839 - +1.1 992,839 - +0.0 992,840 + -0.6 992,840 + +0.8 992,840 + +0.1 992,840 + -0.1 992,840 + -0.0 992,840 + -0.6 992,840 + -1.8 992,840 + +0.9 992,840 + -2.2 992,840 + +0.0 992,840 + -1.4 992,841 - +0.2 992,841 - -0.2 992,841 - +1.2 992,841 - -1.6 992,841 - -0.5 992,841 - +0.4 992,841 - +0.5 992,842 + +1.2 992,842 + -2.2 992,842 + -0.4 992,842 + -1.1 992,842 + -0.2 992,842 + -0.2 992,842 + -0.5 992,842 + +0.4 992,842 + +1.4 992,842 + +0.2 992,842 + +0.6 992,843 - -1.2 992,843 - +0.9 992,843 - +1.4 992,843 - -1.2 992,843 - -0.4 992,843 - +0.0 992,843 - +0.3 992,843 - -0.6 992,843 - +0.1 992,843 - +1.1 992,843 - -0.7 992,843 - -0.4 992,846 + -1.5 992,846 + +0.4 992,846 + +1.2 992,846 + -1.2 992,846 + +0.0 992,846 + -2.0 992,846 + +1.4 992,846 + -0.2 992,846 + -2.3 992,846 + -0.9 992,846 + +0.1 992,846 + -1.0 992,846 + -0.2 992,846 + -1.3 992,846 + -0.1 992,846 + -1.7 992,846 + +0.2 992,847 - +0.1 992,847 - +0.7 992,847 - +0.7 992,847 - -1.7 992,847 - +0.9 992,847 - -1.3 992,847 - -1.5 992,898 + +0.2 992,899 - -0.4 992,899 - -1.5 992,919 + -0.3 992,919 + -0.4 992,920 - +0.7 992,920 - +0.9 992,920 - +1.9 992,927 + +0.0 992,928 - +1.4 992,988 - -0.0 992,988 - -0.2 993,022 + Psyr_0871 0.12 -1.5 993,083 + Psyr_0871 0.16 +0.3 993,083 + Psyr_0871 0.16 -0.1 993,083 + Psyr_0871 0.16 +0.6 993,083 + Psyr_0871 0.16 -3.2 993,083 + Psyr_0871 0.16 -0.0 993,083 + Psyr_0871 0.16 -1.0 993,083 + Psyr_0871 0.16 -1.0 993,083 + Psyr_0871 0.16 -1.8 993,083 + Psyr_0871 0.16 -2.2 993,084 - Psyr_0871 0.16 +0.0 993,084 - Psyr_0871 0.16 -0.2 993,084 - Psyr_0871 0.16 +1.2 993,084 - Psyr_0871 0.16 -2.1 993,084 - Psyr_0871 0.16 -0.1 993,084 - Psyr_0871 0.16 +0.5 993,084 - Psyr_0871 0.16 +0.5 993,084 - Psyr_0871 0.16 +1.4 993,251 + Psyr_0871 0.29 -0.7 993,305 - Psyr_0871 0.33 +4.4 993,422 - Psyr_0871 0.42 +0.5 993,530 - Psyr_0871 0.50 +0.0 993,535 + Psyr_0871 0.51 +0.1
Or see this region's nucleotide sequence