Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0853 and Psyr_0854 overlap by 4 nucleotides Psyr_0854 and Psyr_0855 overlap by 11 nucleotides Psyr_0855 and Psyr_0856 are separated by 144 nucleotides Psyr_0856 and Psyr_0857 overlap by 8 nucleotides
Psyr_0853: Psyr_0853 - conserved hypothetical protein, at 971,484 to 974,303
_0853
Psyr_0854: Psyr_0854 - conserved hypothetical protein, at 974,300 to 975,007
_0854
Psyr_0855: Psyr_0855 - conserved hypothetical protein, at 974,997 to 976,274
_0855
Psyr_0856: Psyr_0856 - conserved hypothetical protein, at 976,419 to 977,225
_0856
Psyr_0857: Psyr_0857 - [SSU ribosomal protein S18P]-alanine acetyltransferase, at 977,218 to 977,670
_0857
Position (kb) 974
975
976
977 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 974.068 kb on + strand at 974.068 kb on + strand at 974.068 kb on + strand at 974.068 kb on + strand at 974.068 kb on + strand at 974.069 kb on - strand at 974.069 kb on - strand at 974.069 kb on - strand at 974.069 kb on - strand at 974.069 kb on - strand at 974.069 kb on - strand at 974.069 kb on - strand at 974.069 kb on - strand at 974.069 kb on - strand at 974.069 kb on - strand at 974.069 kb on - strand at 974.069 kb on - strand at 974.069 kb on - strand at 974.089 kb on + strand at 974.089 kb on + strand at 974.090 kb on - strand at 974.090 kb on - strand at 974.116 kb on + strand at 974.117 kb on - strand at 974.117 kb on - strand at 974.206 kb on + strand at 974.206 kb on + strand at 974.206 kb on + strand at 974.207 kb on - strand at 974.207 kb on - strand at 974.547 kb on + strand, within Psyr_0854 at 974.548 kb on - strand, within Psyr_0854 at 974.551 kb on + strand, within Psyr_0854 at 974.627 kb on + strand, within Psyr_0854 at 974.627 kb on + strand, within Psyr_0854 at 974.628 kb on - strand, within Psyr_0854 at 974.823 kb on + strand, within Psyr_0854 at 974.823 kb on + strand, within Psyr_0854 at 974.823 kb on + strand, within Psyr_0854 at 974.824 kb on - strand, within Psyr_0854 at 974.824 kb on - strand, within Psyr_0854 at 974.826 kb on + strand, within Psyr_0854 at 974.826 kb on + strand, within Psyr_0854 at 974.826 kb on + strand, within Psyr_0854 at 974.827 kb on - strand, within Psyr_0854 at 974.827 kb on - strand, within Psyr_0854 at 974.827 kb on - strand, within Psyr_0854 at 974.878 kb on + strand, within Psyr_0854 at 974.878 kb on + strand, within Psyr_0854 at 974.879 kb on - strand, within Psyr_0854 at 974.914 kb on - strand, within Psyr_0854 at 974.994 kb on - strand at 975.098 kb on - strand at 975.160 kb on + strand, within Psyr_0855 at 975.352 kb on + strand, within Psyr_0855 at 975.352 kb on + strand, within Psyr_0855 at 975.353 kb on - strand, within Psyr_0855 at 975.353 kb on - strand, within Psyr_0855 at 975.358 kb on + strand, within Psyr_0855 at 975.358 kb on + strand, within Psyr_0855 at 975.358 kb on + strand, within Psyr_0855 at 975.358 kb on + strand, within Psyr_0855 at 975.359 kb on - strand at 975.359 kb on - strand, within Psyr_0855 at 975.359 kb on - strand, within Psyr_0855 at 975.359 kb on - strand, within Psyr_0855 at 975.732 kb on + strand, within Psyr_0855 at 975.732 kb on + strand, within Psyr_0855 at 975.732 kb on + strand, within Psyr_0855 at 975.736 kb on + strand, within Psyr_0855 at 975.736 kb on + strand, within Psyr_0855 at 975.736 kb on + strand, within Psyr_0855 at 975.736 kb on + strand, within Psyr_0855 at 975.737 kb on - strand, within Psyr_0855 at 975.737 kb on - strand, within Psyr_0855 at 975.737 kb on - strand, within Psyr_0855 at 975.737 kb on - strand, within Psyr_0855 at 975.737 kb on - strand, within Psyr_0855 at 975.737 kb on - strand, within Psyr_0855 at 975.737 kb on - strand, within Psyr_0855 at 975.737 kb on - strand, within Psyr_0855 at 975.737 kb on - strand, within Psyr_0855 at 975.858 kb on + strand, within Psyr_0855 at 975.859 kb on - strand, within Psyr_0855 at 975.940 kb on + strand, within Psyr_0855 at 975.970 kb on + strand, within Psyr_0855 at 975.970 kb on + strand, within Psyr_0855 at 975.971 kb on - strand, within Psyr_0855 at 976.190 kb on + strand at 976.190 kb on + strand at 976.191 kb on - strand at 976.313 kb on + strand at 976.313 kb on + strand at 976.313 kb on + strand at 976.313 kb on + strand at 976.332 kb on + strand at 976.332 kb on + strand at 976.332 kb on + strand at 976.333 kb on - strand at 976.333 kb on - strand at 976.333 kb on - strand at 976.333 kb on - strand at 976.380 kb on + strand at 976.380 kb on + strand at 976.394 kb on + strand at 976.399 kb on + strand at 977.231 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 974,068 + +1.1 974,068 + +1.4 974,068 + +2.5 974,068 + -2.5 974,068 + -0.1 974,069 - -0.5 974,069 - -1.7 974,069 - -1.0 974,069 - -0.8 974,069 - -1.9 974,069 - -0.4 974,069 - -0.6 974,069 - -1.3 974,069 - +0.7 974,069 - +0.1 974,069 - -1.0 974,069 - -0.0 974,069 - +1.0 974,089 + -0.6 974,089 + -0.9 974,090 - +0.3 974,090 - +1.4 974,116 + +1.4 974,117 - -0.2 974,117 - +1.0 974,206 + +0.5 974,206 + -2.0 974,206 + +1.4 974,207 - -0.6 974,207 - -2.7 974,547 + Psyr_0854 0.35 +0.9 974,548 - Psyr_0854 0.35 +0.6 974,551 + Psyr_0854 0.35 -2.8 974,627 + Psyr_0854 0.46 -1.2 974,627 + Psyr_0854 0.46 -2.2 974,628 - Psyr_0854 0.46 -0.2 974,823 + Psyr_0854 0.74 +1.4 974,823 + Psyr_0854 0.74 -0.9 974,823 + Psyr_0854 0.74 +0.9 974,824 - Psyr_0854 0.74 +0.5 974,824 - Psyr_0854 0.74 -0.2 974,826 + Psyr_0854 0.74 +1.1 974,826 + Psyr_0854 0.74 -0.6 974,826 + Psyr_0854 0.74 +0.1 974,827 - Psyr_0854 0.74 +0.3 974,827 - Psyr_0854 0.74 +0.8 974,827 - Psyr_0854 0.74 -0.2 974,878 + Psyr_0854 0.82 +0.1 974,878 + Psyr_0854 0.82 +1.3 974,879 - Psyr_0854 0.82 -0.2 974,914 - Psyr_0854 0.87 +0.9 974,994 - +0.9 975,098 - -1.0 975,160 + Psyr_0855 0.13 +0.2 975,352 + Psyr_0855 0.28 +0.6 975,352 + Psyr_0855 0.28 -0.1 975,353 - Psyr_0855 0.28 -1.0 975,353 - Psyr_0855 0.28 -0.6 975,358 + Psyr_0855 0.28 -2.1 975,358 + Psyr_0855 0.28 +2.1 975,358 + Psyr_0855 0.28 -1.1 975,358 + Psyr_0855 0.28 -1.3 975,359 - -0.6 975,359 - Psyr_0855 0.28 -0.2 975,359 - Psyr_0855 0.28 -1.6 975,359 - Psyr_0855 0.28 +0.4 975,732 + Psyr_0855 0.58 -0.6 975,732 + Psyr_0855 0.58 -0.8 975,732 + Psyr_0855 0.58 +0.2 975,736 + Psyr_0855 0.58 +0.0 975,736 + Psyr_0855 0.58 -2.0 975,736 + Psyr_0855 0.58 +0.4 975,736 + Psyr_0855 0.58 +0.2 975,737 - Psyr_0855 0.58 +0.6 975,737 - Psyr_0855 0.58 +0.2 975,737 - Psyr_0855 0.58 -1.0 975,737 - Psyr_0855 0.58 +0.4 975,737 - Psyr_0855 0.58 +0.0 975,737 - Psyr_0855 0.58 -0.6 975,737 - Psyr_0855 0.58 +1.0 975,737 - Psyr_0855 0.58 +0.5 975,737 - Psyr_0855 0.58 +0.5 975,858 + Psyr_0855 0.67 +0.0 975,859 - Psyr_0855 0.67 -1.3 975,940 + Psyr_0855 0.74 +1.2 975,970 + Psyr_0855 0.76 -1.0 975,970 + Psyr_0855 0.76 +0.6 975,971 - Psyr_0855 0.76 -0.2 976,190 + +0.5 976,190 + -0.2 976,191 - -0.6 976,313 + +0.8 976,313 + +0.7 976,313 + +0.3 976,313 + +1.0 976,332 + +0.9 976,332 + +2.1 976,332 + -0.2 976,333 - +1.1 976,333 - -2.1 976,333 - -2.2 976,333 - +0.1 976,380 + +0.9 976,380 + +0.8 976,394 + +0.5 976,399 + -0.1 977,231 + -0.2
Or see this region's nucleotide sequence