Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0847

Experiment: epiphytic; Green bean

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0846 and Psyr_0847 are separated by 2 nucleotidesPsyr_0847 and Psyr_0848 are separated by 47 nucleotides Psyr_0846: Psyr_0846 - acetolactate synthase, large subunit, at 958,172 to 959,896 _0846 Psyr_0847: Psyr_0847 - acetolactate synthase, small subunit, at 959,899 to 960,390 _0847 Psyr_0848: Psyr_0848 - ketol-acid reductoisomerase, at 960,438 to 961,454 _0848 Position (kb) 959 960 961Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 958.961 kb on + strand, within Psyr_0846at 958.961 kb on + strand, within Psyr_0846at 958.961 kb on + strand, within Psyr_0846at 958.961 kb on + strand, within Psyr_0846at 958.962 kb on - strand, within Psyr_0846at 958.962 kb on - strand, within Psyr_0846at 958.962 kb on - strand, within Psyr_0846at 958.969 kb on + strand, within Psyr_0846at 959.267 kb on + strand, within Psyr_0846at 959.345 kb on + strand, within Psyr_0846at 959.345 kb on + strand, within Psyr_0846at 959.345 kb on + strand, within Psyr_0846at 959.345 kb on + strand, within Psyr_0846at 959.345 kb on + strand, within Psyr_0846at 959.345 kb on + strand, within Psyr_0846at 959.345 kb on + strand, within Psyr_0846at 959.345 kb on + strand, within Psyr_0846at 959.345 kb on + strand, within Psyr_0846at 959.346 kb on - strand, within Psyr_0846at 959.346 kb on - strand, within Psyr_0846at 959.346 kb on - strand, within Psyr_0846at 959.346 kb on - strand, within Psyr_0846at 959.346 kb on - strand, within Psyr_0846at 959.346 kb on - strand, within Psyr_0846at 959.346 kb on - strand, within Psyr_0846at 959.346 kb on - strand, within Psyr_0846at 959.390 kb on + strand, within Psyr_0846at 959.390 kb on + strand, within Psyr_0846at 959.391 kb on - strand, within Psyr_0846at 959.391 kb on - strand, within Psyr_0846at 959.391 kb on - strand, within Psyr_0846at 959.391 kb on - strand, within Psyr_0846at 959.393 kb on + strand, within Psyr_0846at 959.393 kb on + strand, within Psyr_0846at 959.567 kb on + strand, within Psyr_0846at 959.568 kb on - strand, within Psyr_0846at 959.642 kb on + strand, within Psyr_0846at 959.642 kb on + strand, within Psyr_0846at 959.666 kb on + strand, within Psyr_0846at 959.666 kb on + strand, within Psyr_0846at 959.666 kb on + strand, within Psyr_0846at 959.666 kb on + strand, within Psyr_0846at 959.666 kb on + strand, within Psyr_0846at 959.666 kb on + strand, within Psyr_0846at 959.667 kb on - strand, within Psyr_0846at 959.667 kb on - strand, within Psyr_0846at 959.708 kb on + strand, within Psyr_0846at 959.709 kb on - strand, within Psyr_0846at 959.728 kb on + strandat 959.866 kb on + strandat 959.867 kb on - strandat 959.894 kb on + strandat 959.894 kb on + strandat 959.894 kb on + strandat 959.894 kb on + strandat 959.894 kb on + strandat 959.894 kb on + strandat 959.894 kb on + strandat 959.894 kb on + strandat 959.895 kb on - strandat 959.895 kb on - strandat 959.895 kb on - strandat 959.895 kb on - strandat 959.895 kb on - strandat 959.895 kb on - strandat 959.895 kb on - strandat 959.895 kb on - strandat 959.907 kb on + strandat 959.976 kb on + strand, within Psyr_0847at 959.976 kb on + strand, within Psyr_0847at 959.977 kb on - strand, within Psyr_0847at 959.977 kb on - strand, within Psyr_0847at 959.977 kb on - strand, within Psyr_0847at 959.980 kb on + strand, within Psyr_0847at 959.980 kb on + strand, within Psyr_0847at 959.980 kb on + strand, within Psyr_0847at 959.980 kb on + strand, within Psyr_0847at 959.980 kb on + strand, within Psyr_0847at 959.980 kb on + strand, within Psyr_0847at 959.980 kb on + strand, within Psyr_0847at 959.980 kb on + strand, within Psyr_0847at 959.981 kb on - strand, within Psyr_0847at 959.981 kb on - strand, within Psyr_0847at 959.981 kb on - strand, within Psyr_0847at 959.981 kb on - strand, within Psyr_0847at 959.981 kb on - strand, within Psyr_0847at 959.981 kb on - strand, within Psyr_0847at 959.981 kb on - strand, within Psyr_0847at 960.050 kb on + strand, within Psyr_0847at 960.050 kb on + strand, within Psyr_0847at 960.051 kb on - strand, within Psyr_0847at 960.051 kb on - strand, within Psyr_0847at 960.257 kb on - strand, within Psyr_0847at 960.388 kb on + strandat 960.388 kb on + strandat 960.397 kb on + strandat 960.398 kb on - strandat 960.398 kb on - strandat 960.398 kb on - strandat 960.423 kb on + strandat 960.702 kb on + strand, within Psyr_0848at 960.702 kb on + strand, within Psyr_0848at 960.703 kb on - strand, within Psyr_0848at 960.703 kb on - strand, within Psyr_0848at 960.703 kb on - strand, within Psyr_0848at 960.774 kb on + strand, within Psyr_0848at 960.894 kb on + strand, within Psyr_0848at 960.936 kb on + strand, within Psyr_0848at 960.937 kb on - strand, within Psyr_0848at 960.937 kb on - strand, within Psyr_0848at 961.107 kb on + strand, within Psyr_0848at 961.107 kb on + strand, within Psyr_0848at 961.108 kb on - strand, within Psyr_0848at 961.108 kb on - strand, within Psyr_0848at 961.152 kb on + strand, within Psyr_0848at 961.152 kb on + strand, within Psyr_0848at 961.152 kb on + strand, within Psyr_0848at 961.152 kb on + strand, within Psyr_0848at 961.152 kb on + strand, within Psyr_0848at 961.152 kb on + strand, within Psyr_0848at 961.153 kb on - strand, within Psyr_0848at 961.153 kb on - strand, within Psyr_0848at 961.153 kb on - strand, within Psyr_0848at 961.153 kb on - strand, within Psyr_0848at 961.153 kb on - strand, within Psyr_0848at 961.153 kb on - strand, within Psyr_0848at 961.153 kb on - strand, within Psyr_0848at 961.153 kb on - strand, within Psyr_0848at 961.179 kb on + strand, within Psyr_0848at 961.179 kb on + strand, within Psyr_0848at 961.180 kb on - strand, within Psyr_0848at 961.180 kb on - strand, within Psyr_0848at 961.212 kb on + strand, within Psyr_0848at 961.212 kb on + strand, within Psyr_0848at 961.213 kb on - strand, within Psyr_0848at 961.213 kb on - strand, within Psyr_0848at 961.213 kb on - strand, within Psyr_0848at 961.213 kb on - strand, within Psyr_0848at 961.356 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Green bean
remove
958,961 + Psyr_0846 0.46 -1.7
958,961 + Psyr_0846 0.46 -2.1
958,961 + Psyr_0846 0.46 -3.1
958,961 + Psyr_0846 0.46 -2.8
958,962 - Psyr_0846 0.46 -3.0
958,962 - Psyr_0846 0.46 -3.2
958,962 - Psyr_0846 0.46 -0.9
958,969 + Psyr_0846 0.46 -2.3
959,267 + Psyr_0846 0.63 -1.2
959,345 + Psyr_0846 0.68 -2.1
959,345 + Psyr_0846 0.68 -1.9
959,345 + Psyr_0846 0.68 -3.5
959,345 + Psyr_0846 0.68 -0.6
959,345 + Psyr_0846 0.68 -1.2
959,345 + Psyr_0846 0.68 -3.5
959,345 + Psyr_0846 0.68 -0.3
959,345 + Psyr_0846 0.68 -1.8
959,345 + Psyr_0846 0.68 +1.0
959,346 - Psyr_0846 0.68 +0.1
959,346 - Psyr_0846 0.68 -2.1
959,346 - Psyr_0846 0.68 -2.4
959,346 - Psyr_0846 0.68 +0.8
959,346 - Psyr_0846 0.68 -2.7
959,346 - Psyr_0846 0.68 -2.6
959,346 - Psyr_0846 0.68 +0.1
959,346 - Psyr_0846 0.68 -0.9
959,390 + Psyr_0846 0.71 -1.8
959,390 + Psyr_0846 0.71 -2.2
959,391 - Psyr_0846 0.71 -1.6
959,391 - Psyr_0846 0.71 -2.5
959,391 - Psyr_0846 0.71 -3.3
959,391 - Psyr_0846 0.71 +0.4
959,393 + Psyr_0846 0.71 -1.3
959,393 + Psyr_0846 0.71 -3.1
959,567 + Psyr_0846 0.81 -3.0
959,568 - Psyr_0846 0.81 -1.8
959,642 + Psyr_0846 0.85 -1.6
959,642 + Psyr_0846 0.85 -2.1
959,666 + Psyr_0846 0.87 -2.7
959,666 + Psyr_0846 0.87 -0.2
959,666 + Psyr_0846 0.87 -2.4
959,666 + Psyr_0846 0.87 -1.8
959,666 + Psyr_0846 0.87 -0.9
959,666 + Psyr_0846 0.87 -1.1
959,667 - Psyr_0846 0.87 -2.4
959,667 - Psyr_0846 0.87 +0.7
959,708 + Psyr_0846 0.89 -1.1
959,709 - Psyr_0846 0.89 -2.1
959,728 + -1.5
959,866 + -2.1
959,867 - +0.4
959,894 + -1.0
959,894 + +0.1
959,894 + +0.6
959,894 + +1.4
959,894 + -0.7
959,894 + -1.4
959,894 + -2.3
959,894 + -0.5
959,895 - -0.2
959,895 - +1.5
959,895 - -2.7
959,895 - -0.2
959,895 - +0.3
959,895 - -2.4
959,895 - -3.2
959,895 - -2.3
959,907 + -0.9
959,976 + Psyr_0847 0.16 -0.2
959,976 + Psyr_0847 0.16 -1.6
959,977 - Psyr_0847 0.16 -0.6
959,977 - Psyr_0847 0.16 -3.8
959,977 - Psyr_0847 0.16 -3.6
959,980 + Psyr_0847 0.16 -1.8
959,980 + Psyr_0847 0.16 -1.2
959,980 + Psyr_0847 0.16 -1.0
959,980 + Psyr_0847 0.16 -1.4
959,980 + Psyr_0847 0.16 -1.6
959,980 + Psyr_0847 0.16 -3.7
959,980 + Psyr_0847 0.16 +0.0
959,980 + Psyr_0847 0.16 -1.5
959,981 - Psyr_0847 0.17 -0.6
959,981 - Psyr_0847 0.17 -1.1
959,981 - Psyr_0847 0.17 +0.4
959,981 - Psyr_0847 0.17 -3.0
959,981 - Psyr_0847 0.17 -3.2
959,981 - Psyr_0847 0.17 -1.6
959,981 - Psyr_0847 0.17 +1.6
960,050 + Psyr_0847 0.31 -1.2
960,050 + Psyr_0847 0.31 -0.5
960,051 - Psyr_0847 0.31 -0.3
960,051 - Psyr_0847 0.31 -2.0
960,257 - Psyr_0847 0.73 -3.0
960,388 + -2.4
960,388 + -0.2
960,397 + -0.3
960,398 - -0.6
960,398 - -1.9
960,398 - -2.1
960,423 + +1.0
960,702 + Psyr_0848 0.26 -3.9
960,702 + Psyr_0848 0.26 -0.3
960,703 - Psyr_0848 0.26 +0.4
960,703 - Psyr_0848 0.26 -2.1
960,703 - Psyr_0848 0.26 -0.2
960,774 + Psyr_0848 0.33 -0.5
960,894 + Psyr_0848 0.45 -0.6
960,936 + Psyr_0848 0.49 -1.3
960,937 - Psyr_0848 0.49 -1.3
960,937 - Psyr_0848 0.49 -3.4
961,107 + Psyr_0848 0.66 -1.2
961,107 + Psyr_0848 0.66 -0.1
961,108 - Psyr_0848 0.66 -0.7
961,108 - Psyr_0848 0.66 -2.2
961,152 + Psyr_0848 0.70 +0.4
961,152 + Psyr_0848 0.70 -0.7
961,152 + Psyr_0848 0.70 -1.4
961,152 + Psyr_0848 0.70 -1.8
961,152 + Psyr_0848 0.70 -0.4
961,152 + Psyr_0848 0.70 +0.6
961,153 - Psyr_0848 0.70 -2.6
961,153 - Psyr_0848 0.70 -2.1
961,153 - Psyr_0848 0.70 -3.3
961,153 - Psyr_0848 0.70 -0.2
961,153 - Psyr_0848 0.70 -0.1
961,153 - Psyr_0848 0.70 -1.4
961,153 - Psyr_0848 0.70 -2.4
961,153 - Psyr_0848 0.70 -1.5
961,179 + Psyr_0848 0.73 -1.8
961,179 + Psyr_0848 0.73 -0.4
961,180 - Psyr_0848 0.73 -1.6
961,180 - Psyr_0848 0.73 -3.3
961,212 + Psyr_0848 0.76 -3.2
961,212 + Psyr_0848 0.76 +0.1
961,213 - Psyr_0848 0.76 -2.1
961,213 - Psyr_0848 0.76 -2.8
961,213 - Psyr_0848 0.76 -1.4
961,213 - Psyr_0848 0.76 -1.8
961,356 - -0.6

Or see this region's nucleotide sequence