Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0777 and Psyr_0778 are separated by 667 nucleotides Psyr_0778 and Psyr_0779 are separated by 105 nucleotides
Psyr_0777: Psyr_0777 - transcriptional regulator, LacI family, at 881,642 to 882,655
_0777
Psyr_0778: Psyr_0778 - type III effector HopAG1, at 883,323 to 885,473
_0778
Psyr_0779: Psyr_0779 - type III effector HopAH1, at 885,579 to 886,862
_0779
Position (kb) 883
884
885
886 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 882.376 kb on + strand, within Psyr_0777 at 882.377 kb on - strand, within Psyr_0777 at 882.377 kb on - strand, within Psyr_0777 at 882.377 kb on - strand, within Psyr_0777 at 882.378 kb on + strand, within Psyr_0777 at 882.378 kb on + strand at 882.378 kb on + strand, within Psyr_0777 at 882.378 kb on + strand, within Psyr_0777 at 882.379 kb on - strand, within Psyr_0777 at 882.379 kb on - strand, within Psyr_0777 at 882.379 kb on - strand, within Psyr_0777 at 882.541 kb on + strand, within Psyr_0777 at 882.585 kb on + strand at 882.687 kb on + strand at 882.688 kb on - strand at 882.688 kb on - strand at 882.688 kb on - strand at 882.688 kb on - strand at 882.688 kb on - strand at 882.688 kb on - strand at 882.688 kb on - strand at 882.855 kb on + strand at 882.855 kb on + strand at 882.856 kb on - strand at 882.861 kb on + strand at 882.862 kb on - strand at 882.862 kb on - strand at 882.865 kb on + strand at 882.865 kb on + strand at 882.865 kb on + strand at 882.865 kb on + strand at 882.869 kb on + strand at 882.869 kb on + strand at 882.869 kb on + strand at 882.874 kb on - strand at 882.883 kb on + strand at 882.883 kb on + strand at 882.884 kb on - strand at 882.906 kb on + strand at 882.907 kb on - strand at 882.945 kb on + strand at 882.945 kb on + strand at 882.945 kb on + strand at 882.945 kb on + strand at 882.946 kb on - strand at 882.946 kb on - strand at 882.946 kb on - strand at 882.946 kb on - strand at 882.955 kb on - strand at 883.001 kb on + strand at 883.002 kb on - strand at 883.002 kb on - strand at 883.002 kb on - strand at 883.002 kb on - strand at 883.002 kb on - strand at 883.009 kb on + strand at 883.010 kb on - strand at 883.093 kb on - strand at 883.138 kb on - strand at 883.140 kb on - strand at 883.150 kb on + strand at 883.250 kb on - strand at 883.309 kb on - strand at 883.309 kb on - strand at 883.340 kb on + strand at 883.341 kb on - strand at 883.370 kb on - strand at 883.448 kb on + strand at 883.448 kb on + strand at 883.508 kb on + strand at 883.508 kb on + strand at 883.508 kb on + strand at 883.509 kb on - strand at 883.597 kb on - strand, within Psyr_0778 at 883.597 kb on - strand, within Psyr_0778 at 883.689 kb on - strand, within Psyr_0778 at 883.739 kb on - strand, within Psyr_0778 at 883.745 kb on + strand, within Psyr_0778 at 883.746 kb on - strand, within Psyr_0778 at 883.746 kb on - strand, within Psyr_0778 at 883.746 kb on - strand, within Psyr_0778 at 883.746 kb on - strand, within Psyr_0778 at 883.775 kb on - strand, within Psyr_0778 at 883.775 kb on - strand, within Psyr_0778 at 883.788 kb on - strand, within Psyr_0778 at 883.818 kb on + strand, within Psyr_0778 at 884.042 kb on + strand, within Psyr_0778 at 884.063 kb on + strand, within Psyr_0778 at 884.091 kb on - strand, within Psyr_0778 at 884.091 kb on - strand, within Psyr_0778 at 884.192 kb on + strand, within Psyr_0778 at 884.193 kb on - strand, within Psyr_0778 at 884.235 kb on + strand, within Psyr_0778 at 884.235 kb on + strand, within Psyr_0778 at 884.235 kb on + strand, within Psyr_0778 at 884.235 kb on + strand, within Psyr_0778 at 884.236 kb on - strand, within Psyr_0778 at 884.236 kb on - strand, within Psyr_0778 at 884.261 kb on + strand, within Psyr_0778 at 884.261 kb on + strand, within Psyr_0778 at 884.261 kb on + strand, within Psyr_0778 at 884.261 kb on + strand, within Psyr_0778 at 884.262 kb on - strand, within Psyr_0778 at 884.269 kb on + strand, within Psyr_0778 at 884.270 kb on - strand, within Psyr_0778 at 884.296 kb on - strand, within Psyr_0778 at 884.326 kb on + strand, within Psyr_0778 at 884.326 kb on + strand, within Psyr_0778 at 884.326 kb on + strand, within Psyr_0778 at 884.326 kb on + strand, within Psyr_0778 at 884.326 kb on + strand, within Psyr_0778 at 884.326 kb on + strand, within Psyr_0778 at 884.326 kb on + strand, within Psyr_0778 at 884.327 kb on - strand, within Psyr_0778 at 884.327 kb on - strand, within Psyr_0778 at 884.327 kb on - strand, within Psyr_0778 at 884.327 kb on - strand, within Psyr_0778 at 884.327 kb on - strand, within Psyr_0778 at 884.327 kb on - strand, within Psyr_0778 at 884.327 kb on - strand, within Psyr_0778 at 884.327 kb on - strand, within Psyr_0778 at 884.374 kb on + strand, within Psyr_0778 at 884.374 kb on + strand, within Psyr_0778 at 884.375 kb on - strand, within Psyr_0778 at 884.375 kb on - strand, within Psyr_0778 at 884.375 kb on - strand, within Psyr_0778 at 884.377 kb on + strand, within Psyr_0778 at 884.377 kb on + strand, within Psyr_0778 at 884.378 kb on - strand, within Psyr_0778 at 884.399 kb on + strand, within Psyr_0778 at 884.574 kb on - strand, within Psyr_0778 at 884.663 kb on + strand, within Psyr_0778 at 884.829 kb on + strand, within Psyr_0778 at 884.829 kb on + strand, within Psyr_0778 at 884.829 kb on + strand, within Psyr_0778 at 884.830 kb on - strand, within Psyr_0778 at 884.830 kb on - strand, within Psyr_0778 at 884.830 kb on - strand, within Psyr_0778 at 884.830 kb on - strand, within Psyr_0778 at 884.830 kb on - strand, within Psyr_0778 at 884.831 kb on + strand, within Psyr_0778 at 884.831 kb on + strand, within Psyr_0778 at 884.831 kb on + strand, within Psyr_0778 at 884.831 kb on + strand, within Psyr_0778 at 884.831 kb on + strand, within Psyr_0778 at 884.831 kb on + strand, within Psyr_0778 at 884.831 kb on + strand, within Psyr_0778 at 884.831 kb on + strand, within Psyr_0778 at 884.832 kb on - strand, within Psyr_0778 at 884.832 kb on - strand, within Psyr_0778 at 884.832 kb on - strand, within Psyr_0778 at 884.832 kb on - strand, within Psyr_0778 at 884.832 kb on - strand, within Psyr_0778 at 884.832 kb on - strand, within Psyr_0778 at 884.832 kb on - strand, within Psyr_0778 at 884.832 kb on - strand, within Psyr_0778 at 884.874 kb on - strand, within Psyr_0778 at 884.904 kb on - strand, within Psyr_0778 at 884.904 kb on - strand, within Psyr_0778 at 884.938 kb on + strand, within Psyr_0778 at 884.990 kb on + strand, within Psyr_0778 at 884.990 kb on + strand, within Psyr_0778 at 884.990 kb on + strand, within Psyr_0778 at 884.990 kb on + strand, within Psyr_0778 at 884.990 kb on + strand, within Psyr_0778 at 884.990 kb on + strand, within Psyr_0778 at 884.990 kb on + strand, within Psyr_0778 at 884.991 kb on - strand, within Psyr_0778 at 884.991 kb on - strand, within Psyr_0778 at 884.991 kb on - strand, within Psyr_0778 at 884.991 kb on - strand, within Psyr_0778 at 884.991 kb on - strand, within Psyr_0778 at 884.991 kb on - strand, within Psyr_0778 at 884.991 kb on - strand, within Psyr_0778 at 885.026 kb on + strand, within Psyr_0778 at 885.027 kb on - strand, within Psyr_0778 at 885.027 kb on - strand, within Psyr_0778 at 885.027 kb on - strand, within Psyr_0778 at 885.231 kb on + strand, within Psyr_0778 at 885.232 kb on - strand, within Psyr_0778 at 885.309 kb on + strand at 885.309 kb on + strand at 885.309 kb on + strand at 885.309 kb on + strand at 885.309 kb on + strand at 885.310 kb on - strand at 885.310 kb on - strand at 885.310 kb on - strand at 885.310 kb on - strand at 885.310 kb on - strand at 885.310 kb on - strand at 885.325 kb on + strand at 885.325 kb on + strand at 885.325 kb on + strand at 885.325 kb on + strand at 885.326 kb on - strand at 885.326 kb on - strand at 885.326 kb on - strand at 885.334 kb on + strand at 885.334 kb on + strand at 885.384 kb on - strand at 885.450 kb on + strand at 885.450 kb on + strand at 885.450 kb on + strand at 885.451 kb on - strand at 885.451 kb on - strand at 885.451 kb on - strand at 885.451 kb on - strand at 885.451 kb on - strand at 885.454 kb on + strand at 885.455 kb on - strand at 885.455 kb on - strand at 885.455 kb on - strand at 885.455 kb on - strand at 885.455 kb on - strand at 885.455 kb on - strand at 885.504 kb on - strand at 885.585 kb on - strand at 885.590 kb on + strand at 885.590 kb on + strand at 885.590 kb on + strand at 885.591 kb on - strand at 885.591 kb on - strand at 885.591 kb on - strand at 885.591 kb on - strand at 885.660 kb on + strand at 885.661 kb on - strand at 885.668 kb on + strand at 885.668 kb on + strand at 885.669 kb on - strand at 885.669 kb on - strand at 885.875 kb on + strand, within Psyr_0779 at 885.875 kb on + strand, within Psyr_0779 at 885.875 kb on + strand, within Psyr_0779 at 885.875 kb on + strand, within Psyr_0779 at 885.876 kb on - strand, within Psyr_0779 at 885.876 kb on - strand, within Psyr_0779 at 885.890 kb on + strand, within Psyr_0779 at 885.891 kb on - strand, within Psyr_0779 at 885.891 kb on - strand, within Psyr_0779 at 886.020 kb on - strand, within Psyr_0779 at 886.236 kb on - strand, within Psyr_0779 at 886.236 kb on - strand, within Psyr_0779 at 886.354 kb on + strand, within Psyr_0779 at 886.355 kb on - strand, within Psyr_0779 at 886.361 kb on + strand, within Psyr_0779 at 886.361 kb on + strand, within Psyr_0779 at 886.446 kb on + strand, within Psyr_0779 at 886.447 kb on - strand, within Psyr_0779 at 886.447 kb on - strand, within Psyr_0779
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 882,376 + Psyr_0777 0.72 -0.1 882,377 - Psyr_0777 0.72 -1.3 882,377 - Psyr_0777 0.72 +0.8 882,377 - Psyr_0777 0.72 -1.2 882,378 + Psyr_0777 0.73 -0.2 882,378 + +0.4 882,378 + Psyr_0777 0.73 +0.6 882,378 + Psyr_0777 0.73 -0.8 882,379 - Psyr_0777 0.73 +1.6 882,379 - Psyr_0777 0.73 +1.6 882,379 - Psyr_0777 0.73 +0.7 882,541 + Psyr_0777 0.89 +0.8 882,585 + +0.2 882,687 + -2.0 882,688 - -0.5 882,688 - -2.9 882,688 - +0.2 882,688 - +0.7 882,688 - -0.7 882,688 - +0.5 882,688 - -0.6 882,855 + +1.9 882,855 + -0.2 882,856 - +0.4 882,861 + +0.8 882,862 - +1.3 882,862 - -1.0 882,865 + -0.5 882,865 + +0.6 882,865 + -1.2 882,865 + -0.9 882,869 + -0.8 882,869 + -0.8 882,869 + -0.1 882,874 - +0.1 882,883 + +0.1 882,883 + -0.8 882,884 - +0.9 882,906 + -0.1 882,907 - -0.8 882,945 + -3.1 882,945 + +1.2 882,945 + +0.4 882,945 + -0.0 882,946 - -0.1 882,946 - +1.4 882,946 - +1.0 882,946 - +1.1 882,955 - +0.3 883,001 + -1.4 883,002 - +0.4 883,002 - +1.8 883,002 - +0.6 883,002 - -0.4 883,002 - +0.9 883,009 + -1.2 883,010 - -1.0 883,093 - +1.5 883,138 - -0.1 883,140 - -1.0 883,150 + -0.2 883,250 - +0.4 883,309 - -1.2 883,309 - +2.1 883,340 + -1.9 883,341 - -1.3 883,370 - -0.6 883,448 + -0.6 883,448 + -0.8 883,508 + +2.5 883,508 + +1.4 883,508 + -0.9 883,509 - -0.4 883,597 - Psyr_0778 0.13 +0.2 883,597 - Psyr_0778 0.13 +0.0 883,689 - Psyr_0778 0.17 -1.2 883,739 - Psyr_0778 0.19 -1.1 883,745 + Psyr_0778 0.20 -1.7 883,746 - Psyr_0778 0.20 -0.3 883,746 - Psyr_0778 0.20 +1.4 883,746 - Psyr_0778 0.20 +0.1 883,746 - Psyr_0778 0.20 -0.0 883,775 - Psyr_0778 0.21 -0.6 883,775 - Psyr_0778 0.21 +0.6 883,788 - Psyr_0778 0.22 +0.0 883,818 + Psyr_0778 0.23 -0.7 884,042 + Psyr_0778 0.33 -0.0 884,063 + Psyr_0778 0.34 +0.7 884,091 - Psyr_0778 0.36 +0.1 884,091 - Psyr_0778 0.36 +1.0 884,192 + Psyr_0778 0.40 -0.1 884,193 - Psyr_0778 0.40 +0.0 884,235 + Psyr_0778 0.42 +0.7 884,235 + Psyr_0778 0.42 +0.7 884,235 + Psyr_0778 0.42 -2.1 884,235 + Psyr_0778 0.42 +0.6 884,236 - Psyr_0778 0.42 -1.6 884,236 - Psyr_0778 0.42 +0.5 884,261 + Psyr_0778 0.44 -0.7 884,261 + Psyr_0778 0.44 -0.6 884,261 + Psyr_0778 0.44 +0.6 884,261 + Psyr_0778 0.44 +0.6 884,262 - Psyr_0778 0.44 -0.3 884,269 + Psyr_0778 0.44 +0.4 884,270 - Psyr_0778 0.44 -1.3 884,296 - Psyr_0778 0.45 -0.5 884,326 + Psyr_0778 0.47 +1.4 884,326 + Psyr_0778 0.47 +0.3 884,326 + Psyr_0778 0.47 +0.2 884,326 + Psyr_0778 0.47 -1.3 884,326 + Psyr_0778 0.47 +1.0 884,326 + Psyr_0778 0.47 -0.4 884,326 + Psyr_0778 0.47 -0.4 884,327 - Psyr_0778 0.47 +0.8 884,327 - Psyr_0778 0.47 +0.6 884,327 - Psyr_0778 0.47 -1.6 884,327 - Psyr_0778 0.47 -0.6 884,327 - Psyr_0778 0.47 -0.2 884,327 - Psyr_0778 0.47 -2.0 884,327 - Psyr_0778 0.47 +0.6 884,327 - Psyr_0778 0.47 -0.5 884,374 + Psyr_0778 0.49 -2.0 884,374 + Psyr_0778 0.49 +0.7 884,375 - Psyr_0778 0.49 -0.1 884,375 - Psyr_0778 0.49 -0.4 884,375 - Psyr_0778 0.49 -1.6 884,377 + Psyr_0778 0.49 +1.1 884,377 + Psyr_0778 0.49 -1.1 884,378 - Psyr_0778 0.49 +1.1 884,399 + Psyr_0778 0.50 +1.6 884,574 - Psyr_0778 0.58 -0.2 884,663 + Psyr_0778 0.62 -1.2 884,829 + Psyr_0778 0.70 -1.4 884,829 + Psyr_0778 0.70 -1.0 884,829 + Psyr_0778 0.70 -1.2 884,830 - Psyr_0778 0.70 -0.2 884,830 - Psyr_0778 0.70 -1.2 884,830 - Psyr_0778 0.70 +0.4 884,830 - Psyr_0778 0.70 -1.9 884,830 - Psyr_0778 0.70 -0.8 884,831 + Psyr_0778 0.70 +0.4 884,831 + Psyr_0778 0.70 -0.1 884,831 + Psyr_0778 0.70 -0.4 884,831 + Psyr_0778 0.70 +0.9 884,831 + Psyr_0778 0.70 -0.3 884,831 + Psyr_0778 0.70 +1.4 884,831 + Psyr_0778 0.70 -0.2 884,831 + Psyr_0778 0.70 +1.3 884,832 - Psyr_0778 0.70 +1.0 884,832 - Psyr_0778 0.70 -0.9 884,832 - Psyr_0778 0.70 -1.2 884,832 - Psyr_0778 0.70 -1.1 884,832 - Psyr_0778 0.70 -0.3 884,832 - Psyr_0778 0.70 +0.3 884,832 - Psyr_0778 0.70 -0.2 884,832 - Psyr_0778 0.70 -0.2 884,874 - Psyr_0778 0.72 -1.2 884,904 - Psyr_0778 0.74 -1.4 884,904 - Psyr_0778 0.74 -2.0 884,938 + Psyr_0778 0.75 +0.8 884,990 + Psyr_0778 0.77 -0.8 884,990 + Psyr_0778 0.77 -1.2 884,990 + Psyr_0778 0.77 -0.6 884,990 + Psyr_0778 0.77 +1.9 884,990 + Psyr_0778 0.77 +0.5 884,990 + Psyr_0778 0.77 +0.1 884,990 + Psyr_0778 0.77 +0.5 884,991 - Psyr_0778 0.78 -0.1 884,991 - Psyr_0778 0.78 -0.6 884,991 - Psyr_0778 0.78 +0.5 884,991 - Psyr_0778 0.78 +0.1 884,991 - Psyr_0778 0.78 +0.4 884,991 - Psyr_0778 0.78 -1.9 884,991 - Psyr_0778 0.78 +0.1 885,026 + Psyr_0778 0.79 +0.6 885,027 - Psyr_0778 0.79 +0.6 885,027 - Psyr_0778 0.79 +0.1 885,027 - Psyr_0778 0.79 +0.1 885,231 + Psyr_0778 0.89 -0.7 885,232 - Psyr_0778 0.89 -1.0 885,309 + -0.2 885,309 + +0.3 885,309 + +0.0 885,309 + +2.2 885,309 + -0.8 885,310 - -1.5 885,310 - -0.1 885,310 - +0.6 885,310 - +0.4 885,310 - -1.8 885,310 - +0.3 885,325 + +1.7 885,325 + +0.1 885,325 + +1.9 885,325 + -0.1 885,326 - -0.1 885,326 - +0.5 885,326 - +0.7 885,334 + -0.6 885,334 + +0.2 885,384 - -0.1 885,450 + -1.3 885,450 + +1.7 885,450 + -2.0 885,451 - +0.3 885,451 - -0.5 885,451 - +0.5 885,451 - -0.2 885,451 - -0.9 885,454 + +1.0 885,455 - -1.4 885,455 - +0.2 885,455 - +1.0 885,455 - -1.0 885,455 - -0.2 885,455 - -0.7 885,504 - -0.7 885,585 - +0.3 885,590 + +1.0 885,590 + +0.1 885,590 + -0.9 885,591 - -0.6 885,591 - +0.2 885,591 - -2.5 885,591 - +1.1 885,660 + +1.3 885,661 - +0.4 885,668 + +0.5 885,668 + -0.8 885,669 - -0.8 885,669 - +0.1 885,875 + Psyr_0779 0.23 +1.1 885,875 + Psyr_0779 0.23 +0.2 885,875 + Psyr_0779 0.23 -1.9 885,875 + Psyr_0779 0.23 +0.6 885,876 - Psyr_0779 0.23 -2.2 885,876 - Psyr_0779 0.23 +0.3 885,890 + Psyr_0779 0.24 -1.3 885,891 - Psyr_0779 0.24 -1.1 885,891 - Psyr_0779 0.24 +0.6 886,020 - Psyr_0779 0.34 +0.3 886,236 - Psyr_0779 0.51 -1.2 886,236 - Psyr_0779 0.51 +0.9 886,354 + Psyr_0779 0.60 +0.8 886,355 - Psyr_0779 0.60 +0.1 886,361 + Psyr_0779 0.61 +1.6 886,361 + Psyr_0779 0.61 +0.1 886,446 + Psyr_0779 0.68 +0.3 886,447 - Psyr_0779 0.68 +1.4 886,447 - Psyr_0779 0.68 +2.2
Or see this region's nucleotide sequence