Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0738 and Psyr_0739 are separated by 331 nucleotides Psyr_0739 and Psyr_0740 are separated by 273 nucleotides Psyr_0740 and Psyr_0741 are separated by 80 nucleotides
Psyr_0738: Psyr_0738 - type III effector protein AvrRpm1, at 842,575 to 843,261
_0738
Psyr_0739: Psyr_0739 - CDS, at 843,593 to 844,246
_0739
Psyr_0740: Psyr_0740 - CDS, at 844,520 to 844,927
_0740
Psyr_0741: Psyr_0741 - transcriptional regulator, TetR family, at 845,008 to 845,643
_0741
Position (kb) 843
844
845 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 842.830 kb on + strand, within Psyr_0738 at 842.830 kb on + strand, within Psyr_0738 at 842.871 kb on + strand, within Psyr_0738 at 842.927 kb on + strand, within Psyr_0738 at 842.927 kb on + strand, within Psyr_0738 at 842.927 kb on + strand, within Psyr_0738 at 842.927 kb on + strand, within Psyr_0738 at 842.927 kb on + strand, within Psyr_0738 at 842.928 kb on - strand, within Psyr_0738 at 842.974 kb on - strand, within Psyr_0738 at 842.979 kb on + strand, within Psyr_0738 at 842.980 kb on - strand, within Psyr_0738 at 842.980 kb on - strand, within Psyr_0738 at 842.980 kb on - strand, within Psyr_0738 at 843.019 kb on - strand, within Psyr_0738 at 843.049 kb on + strand, within Psyr_0738 at 843.049 kb on + strand, within Psyr_0738 at 843.049 kb on + strand, within Psyr_0738 at 843.069 kb on + strand, within Psyr_0738 at 843.069 kb on + strand, within Psyr_0738 at 843.070 kb on - strand, within Psyr_0738 at 843.095 kb on + strand, within Psyr_0738 at 843.095 kb on + strand, within Psyr_0738 at 843.095 kb on + strand, within Psyr_0738 at 843.221 kb on + strand at 843.222 kb on - strand at 843.224 kb on + strand at 843.225 kb on - strand at 843.244 kb on - strand at 843.244 kb on - strand at 843.261 kb on + strand at 843.283 kb on + strand at 843.284 kb on - strand at 843.284 kb on - strand at 843.312 kb on + strand at 843.312 kb on + strand at 843.374 kb on + strand at 843.382 kb on - strand at 843.389 kb on + strand at 843.389 kb on + strand at 843.389 kb on + strand at 843.389 kb on + strand at 843.390 kb on - strand at 843.390 kb on - strand at 843.455 kb on - strand at 843.552 kb on - strand at 843.556 kb on - strand at 843.556 kb on - strand at 843.556 kb on - strand at 843.556 kb on - strand at 843.561 kb on - strand at 843.561 kb on - strand at 843.561 kb on - strand at 843.566 kb on - strand at 843.585 kb on + strand at 843.585 kb on + strand at 843.586 kb on - strand at 843.586 kb on - strand at 843.628 kb on + strand at 843.628 kb on + strand at 843.638 kb on + strand at 843.638 kb on + strand at 843.638 kb on + strand at 843.638 kb on + strand at 843.639 kb on - strand at 843.639 kb on - strand at 843.639 kb on - strand at 843.639 kb on - strand at 843.749 kb on + strand, within Psyr_0739 at 843.749 kb on + strand, within Psyr_0739 at 843.756 kb on + strand, within Psyr_0739 at 843.756 kb on + strand, within Psyr_0739 at 843.757 kb on - strand, within Psyr_0739 at 843.757 kb on - strand, within Psyr_0739 at 843.757 kb on - strand, within Psyr_0739 at 843.757 kb on - strand, within Psyr_0739 at 843.808 kb on - strand, within Psyr_0739 at 843.808 kb on - strand, within Psyr_0739 at 844.020 kb on + strand, within Psyr_0739 at 844.059 kb on - strand, within Psyr_0739 at 844.103 kb on + strand, within Psyr_0739 at 844.103 kb on + strand, within Psyr_0739 at 844.103 kb on + strand, within Psyr_0739 at 844.104 kb on - strand, within Psyr_0739 at 844.203 kb on + strand at 844.203 kb on + strand at 844.228 kb on + strand at 844.416 kb on - strand at 844.457 kb on + strand at 844.500 kb on + strand at 844.501 kb on - strand at 844.557 kb on + strand at 844.557 kb on + strand at 844.557 kb on + strand at 844.557 kb on + strand at 844.558 kb on - strand at 844.558 kb on - strand at 844.558 kb on - strand at 844.558 kb on - strand at 844.558 kb on - strand at 844.634 kb on + strand, within Psyr_0740 at 844.634 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.737 kb on - strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.885 kb on - strand, within Psyr_0740 at 844.885 kb on - strand, within Psyr_0740 at 844.885 kb on - strand, within Psyr_0740 at 844.885 kb on - strand, within Psyr_0740 at 844.885 kb on - strand, within Psyr_0740 at 844.885 kb on - strand, within Psyr_0740 at 844.885 kb on - strand, within Psyr_0740 at 844.902 kb on - strand at 844.948 kb on + strand at 844.948 kb on + strand at 844.948 kb on + strand at 844.948 kb on + strand at 844.949 kb on - strand at 844.949 kb on - strand at 844.949 kb on - strand at 844.952 kb on + strand at 844.952 kb on + strand at 844.953 kb on - strand at 844.953 kb on - strand at 844.953 kb on - strand at 844.953 kb on - strand at 844.960 kb on + strand at 844.961 kb on - strand at 844.998 kb on + strand at 844.998 kb on + strand at 844.998 kb on + strand at 844.998 kb on + strand at 844.999 kb on - strand at 844.999 kb on - strand at 844.999 kb on - strand at 844.999 kb on - strand at 845.151 kb on + strand, within Psyr_0741 at 845.151 kb on + strand, within Psyr_0741 at 845.183 kb on + strand, within Psyr_0741 at 845.183 kb on + strand, within Psyr_0741 at 845.183 kb on + strand, within Psyr_0741 at 845.183 kb on + strand, within Psyr_0741 at 845.183 kb on + strand, within Psyr_0741 at 845.238 kb on + strand, within Psyr_0741
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 842,830 + Psyr_0738 0.37 -0.2 842,830 + Psyr_0738 0.37 +1.7 842,871 + Psyr_0738 0.43 -1.2 842,927 + Psyr_0738 0.51 +1.2 842,927 + Psyr_0738 0.51 +0.4 842,927 + Psyr_0738 0.51 -0.2 842,927 + Psyr_0738 0.51 +1.0 842,927 + Psyr_0738 0.51 +1.1 842,928 - Psyr_0738 0.51 +0.4 842,974 - Psyr_0738 0.58 -1.6 842,979 + Psyr_0738 0.59 -0.8 842,980 - Psyr_0738 0.59 -0.1 842,980 - Psyr_0738 0.59 -1.3 842,980 - Psyr_0738 0.59 +0.1 843,019 - Psyr_0738 0.65 -0.6 843,049 + Psyr_0738 0.69 +2.0 843,049 + Psyr_0738 0.69 +0.5 843,049 + Psyr_0738 0.69 +2.7 843,069 + Psyr_0738 0.72 +1.7 843,069 + Psyr_0738 0.72 -2.2 843,070 - Psyr_0738 0.72 -0.1 843,095 + Psyr_0738 0.76 -0.1 843,095 + Psyr_0738 0.76 -1.2 843,095 + Psyr_0738 0.76 +0.4 843,221 + -0.8 843,222 - +0.5 843,224 + +1.7 843,225 - +0.2 843,244 - -0.1 843,244 - +0.1 843,261 + +0.8 843,283 + -0.5 843,284 - +0.5 843,284 - +0.4 843,312 + +0.9 843,312 + -3.2 843,374 + -0.1 843,382 - +0.7 843,389 + +1.7 843,389 + +1.7 843,389 + +0.6 843,389 + -0.0 843,390 - -0.8 843,390 - -1.0 843,455 - +2.1 843,552 - +0.8 843,556 - +0.4 843,556 - +0.1 843,556 - +0.2 843,556 - -1.6 843,561 - -0.2 843,561 - -0.1 843,561 - +1.7 843,566 - -2.4 843,585 + -0.1 843,585 + +0.2 843,586 - +0.4 843,586 - +0.2 843,628 + -1.7 843,628 + +2.4 843,638 + +0.0 843,638 + +0.5 843,638 + -0.4 843,638 + -0.4 843,639 - -0.6 843,639 - +0.1 843,639 - +1.3 843,639 - -1.5 843,749 + Psyr_0739 0.24 +0.4 843,749 + Psyr_0739 0.24 -0.4 843,756 + Psyr_0739 0.25 +0.2 843,756 + Psyr_0739 0.25 -0.1 843,757 - Psyr_0739 0.25 -0.5 843,757 - Psyr_0739 0.25 -1.4 843,757 - Psyr_0739 0.25 -1.6 843,757 - Psyr_0739 0.25 +0.2 843,808 - Psyr_0739 0.33 +1.5 843,808 - Psyr_0739 0.33 -1.8 844,020 + Psyr_0739 0.65 -0.0 844,059 - Psyr_0739 0.71 -3.3 844,103 + Psyr_0739 0.78 -0.4 844,103 + Psyr_0739 0.78 -2.9 844,103 + Psyr_0739 0.78 +0.8 844,104 - Psyr_0739 0.78 -2.2 844,203 + +0.1 844,203 + +1.5 844,228 + -1.4 844,416 - +0.8 844,457 + +0.3 844,500 + +0.3 844,501 - +0.5 844,557 + +1.0 844,557 + -1.8 844,557 + +1.5 844,557 + -1.8 844,558 - +1.1 844,558 - -1.3 844,558 - +1.1 844,558 - -0.3 844,558 - -1.8 844,634 + Psyr_0740 0.28 -1.4 844,634 + Psyr_0740 0.28 -1.8 844,656 + Psyr_0740 0.33 -1.2 844,656 + Psyr_0740 0.33 +0.4 844,656 + Psyr_0740 0.33 +0.7 844,656 + Psyr_0740 0.33 -2.6 844,656 + Psyr_0740 0.33 +0.7 844,656 + Psyr_0740 0.33 +0.3 844,656 + Psyr_0740 0.33 +0.8 844,656 + Psyr_0740 0.33 +0.4 844,656 + Psyr_0740 0.33 -3.1 844,656 + Psyr_0740 0.33 +1.0 844,656 + Psyr_0740 0.33 +1.1 844,656 + Psyr_0740 0.33 +0.3 844,656 + Psyr_0740 0.33 -0.7 844,656 + Psyr_0740 0.33 -0.6 844,656 + Psyr_0740 0.33 -0.2 844,656 + Psyr_0740 0.33 -0.4 844,656 + Psyr_0740 0.33 -0.9 844,656 + Psyr_0740 0.33 -1.3 844,656 + Psyr_0740 0.33 +1.2 844,657 - Psyr_0740 0.34 +2.0 844,657 - Psyr_0740 0.34 +0.6 844,657 - Psyr_0740 0.34 +0.0 844,657 - Psyr_0740 0.34 -0.3 844,657 - Psyr_0740 0.34 +0.4 844,657 - Psyr_0740 0.34 -1.2 844,657 - Psyr_0740 0.34 +0.3 844,657 - Psyr_0740 0.34 -0.1 844,657 - Psyr_0740 0.34 -0.5 844,657 - Psyr_0740 0.34 -0.2 844,657 - Psyr_0740 0.34 +0.6 844,657 - Psyr_0740 0.34 -1.2 844,657 - Psyr_0740 0.34 +1.4 844,657 - Psyr_0740 0.34 -0.8 844,657 - Psyr_0740 0.34 -0.9 844,657 - Psyr_0740 0.34 -0.2 844,657 - Psyr_0740 0.34 -0.2 844,657 - Psyr_0740 0.34 +1.0 844,657 - Psyr_0740 0.34 +2.3 844,657 - Psyr_0740 0.34 -1.8 844,657 - Psyr_0740 0.34 +0.6 844,657 - Psyr_0740 0.34 +0.8 844,657 - Psyr_0740 0.34 +0.9 844,737 - Psyr_0740 0.53 +0.1 844,884 + Psyr_0740 0.89 -0.1 844,884 + Psyr_0740 0.89 +0.5 844,884 + Psyr_0740 0.89 +0.6 844,884 + Psyr_0740 0.89 +1.0 844,884 + Psyr_0740 0.89 -0.7 844,884 + Psyr_0740 0.89 +0.5 844,884 + Psyr_0740 0.89 +0.3 844,884 + Psyr_0740 0.89 -0.6 844,884 + Psyr_0740 0.89 +0.8 844,884 + Psyr_0740 0.89 +0.9 844,884 + Psyr_0740 0.89 +1.9 844,884 + Psyr_0740 0.89 +1.0 844,885 - Psyr_0740 0.89 +1.0 844,885 - Psyr_0740 0.89 +0.2 844,885 - Psyr_0740 0.89 +0.1 844,885 - Psyr_0740 0.89 -3.4 844,885 - Psyr_0740 0.89 -1.2 844,885 - Psyr_0740 0.89 -1.0 844,885 - Psyr_0740 0.89 -0.3 844,902 - -0.6 844,948 + +0.5 844,948 + +0.3 844,948 + -1.9 844,948 + +0.2 844,949 - +0.8 844,949 - +0.4 844,949 - +2.4 844,952 + +1.2 844,952 + +1.8 844,953 - -0.7 844,953 - +0.2 844,953 - +1.0 844,953 - +1.4 844,960 + +0.9 844,961 - -0.4 844,998 + +1.0 844,998 + -0.6 844,998 + -0.2 844,998 + +3.2 844,999 - -0.7 844,999 - +0.1 844,999 - -0.0 844,999 - +0.5 845,151 + Psyr_0741 0.22 +0.1 845,151 + Psyr_0741 0.22 -0.1 845,183 + Psyr_0741 0.28 +0.8 845,183 + Psyr_0741 0.28 +1.4 845,183 + Psyr_0741 0.28 +0.2 845,183 + Psyr_0741 0.28 +1.0 845,183 + Psyr_0741 0.28 -0.9 845,238 + Psyr_0741 0.36 -1.2
Or see this region's nucleotide sequence