Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0658 and Psyr_0659 are separated by 116 nucleotides Psyr_0659 and Psyr_0660 are separated by 436 nucleotides
Psyr_0658: Psyr_0658 - Zinc-containing alcohol dehydrogenase superfamily, at 746,023 to 747,036
_0658
Psyr_0659: Psyr_0659 - transcriptional regulator, LysR family, at 747,153 to 748,076
_0659
Psyr_0660: Psyr_0660 - transcriptional regulator, ArsR family, at 748,513 to 749,205
_0660
Position (kb) 747
748
749 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 746.225 kb on + strand, within Psyr_0658 at 746.225 kb on + strand, within Psyr_0658 at 746.225 kb on + strand, within Psyr_0658 at 746.225 kb on + strand, within Psyr_0658 at 746.225 kb on + strand, within Psyr_0658 at 746.225 kb on + strand, within Psyr_0658 at 746.226 kb on - strand, within Psyr_0658 at 746.226 kb on - strand, within Psyr_0658 at 746.226 kb on - strand, within Psyr_0658 at 746.226 kb on - strand, within Psyr_0658 at 746.226 kb on - strand, within Psyr_0658 at 746.226 kb on - strand, within Psyr_0658 at 746.226 kb on - strand, within Psyr_0658 at 746.771 kb on + strand, within Psyr_0658 at 746.771 kb on + strand, within Psyr_0658 at 746.771 kb on + strand, within Psyr_0658 at 746.771 kb on + strand, within Psyr_0658 at 746.772 kb on - strand, within Psyr_0658 at 746.772 kb on - strand, within Psyr_0658 at 746.772 kb on - strand, within Psyr_0658 at 746.772 kb on - strand, within Psyr_0658 at 746.772 kb on - strand, within Psyr_0658 at 746.912 kb on - strand, within Psyr_0658 at 747.018 kb on - strand at 747.018 kb on - strand at 747.020 kb on + strand at 747.020 kb on + strand at 747.021 kb on - strand at 747.021 kb on - strand at 747.021 kb on - strand at 747.021 kb on - strand at 747.142 kb on - strand at 747.185 kb on - strand at 747.185 kb on - strand at 747.270 kb on - strand, within Psyr_0659 at 747.542 kb on + strand, within Psyr_0659 at 747.666 kb on + strand, within Psyr_0659 at 747.666 kb on + strand, within Psyr_0659 at 747.666 kb on + strand, within Psyr_0659 at 747.716 kb on + strand, within Psyr_0659 at 747.716 kb on + strand, within Psyr_0659 at 747.717 kb on - strand, within Psyr_0659 at 747.717 kb on - strand, within Psyr_0659 at 747.871 kb on - strand, within Psyr_0659 at 747.871 kb on - strand, within Psyr_0659 at 747.871 kb on - strand, within Psyr_0659 at 747.992 kb on + strand at 748.034 kb on + strand at 748.034 kb on + strand at 748.034 kb on + strand at 748.035 kb on - strand at 748.035 kb on - strand at 748.035 kb on - strand at 748.035 kb on - strand at 748.035 kb on - strand at 748.035 kb on - strand at 748.035 kb on - strand at 748.048 kb on + strand at 748.048 kb on + strand at 748.049 kb on - strand at 748.049 kb on - strand at 748.049 kb on - strand at 748.074 kb on + strand at 748.098 kb on + strand at 748.098 kb on + strand at 748.123 kb on + strand at 748.222 kb on - strand at 748.270 kb on + strand at 748.270 kb on + strand at 748.270 kb on + strand at 748.271 kb on - strand at 748.271 kb on - strand at 748.271 kb on - strand at 748.271 kb on - strand at 748.271 kb on - strand at 748.271 kb on - strand at 748.271 kb on - strand at 748.271 kb on - strand at 748.288 kb on + strand at 748.289 kb on - strand at 748.299 kb on - strand at 748.367 kb on + strand at 748.368 kb on - strand at 748.404 kb on - strand at 748.404 kb on - strand at 748.410 kb on + strand at 748.412 kb on + strand at 748.412 kb on + strand at 748.412 kb on + strand at 748.413 kb on - strand at 748.413 kb on - strand at 748.413 kb on - strand at 748.423 kb on - strand at 748.423 kb on - strand at 748.423 kb on - strand at 748.423 kb on - strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.427 kb on - strand at 748.427 kb on - strand at 748.427 kb on - strand at 748.427 kb on - strand at 748.427 kb on - strand at 748.428 kb on + strand at 748.428 kb on + strand at 748.428 kb on + strand at 748.428 kb on + strand at 748.428 kb on + strand at 748.429 kb on - strand at 748.429 kb on - strand at 748.429 kb on - strand at 748.429 kb on - strand at 748.429 kb on - strand at 748.429 kb on - strand at 748.483 kb on + strand at 748.483 kb on + strand at 748.483 kb on + strand at 748.483 kb on + strand at 748.483 kb on + strand at 748.484 kb on - strand at 748.484 kb on - strand at 748.484 kb on - strand at 748.484 kb on - strand at 748.484 kb on - strand at 748.484 kb on - strand at 748.484 kb on - strand at 748.484 kb on - strand at 748.599 kb on + strand, within Psyr_0660 at 748.599 kb on + strand, within Psyr_0660 at 748.599 kb on + strand, within Psyr_0660 at 748.600 kb on - strand, within Psyr_0660 at 748.792 kb on - strand, within Psyr_0660 at 748.926 kb on - strand, within Psyr_0660 at 748.926 kb on - strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.997 kb on + strand, within Psyr_0660
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 746,225 + Psyr_0658 0.20 -0.7 746,225 + Psyr_0658 0.20 +0.0 746,225 + Psyr_0658 0.20 -0.1 746,225 + Psyr_0658 0.20 -1.0 746,225 + Psyr_0658 0.20 -1.4 746,225 + Psyr_0658 0.20 -2.0 746,226 - Psyr_0658 0.20 +0.9 746,226 - Psyr_0658 0.20 +0.8 746,226 - Psyr_0658 0.20 +0.5 746,226 - Psyr_0658 0.20 +0.7 746,226 - Psyr_0658 0.20 +0.7 746,226 - Psyr_0658 0.20 +0.0 746,226 - Psyr_0658 0.20 +0.8 746,771 + Psyr_0658 0.74 -0.1 746,771 + Psyr_0658 0.74 +0.1 746,771 + Psyr_0658 0.74 -1.0 746,771 + Psyr_0658 0.74 -0.9 746,772 - Psyr_0658 0.74 +0.3 746,772 - Psyr_0658 0.74 -0.7 746,772 - Psyr_0658 0.74 +0.6 746,772 - Psyr_0658 0.74 -0.1 746,772 - Psyr_0658 0.74 -0.1 746,912 - Psyr_0658 0.88 +0.6 747,018 - +1.4 747,018 - +0.7 747,020 + +3.2 747,020 + +0.3 747,021 - -0.1 747,021 - +2.4 747,021 - -0.4 747,021 - +0.1 747,142 - +0.1 747,185 - +0.8 747,185 - -1.0 747,270 - Psyr_0659 0.13 -0.7 747,542 + Psyr_0659 0.42 +1.1 747,666 + Psyr_0659 0.56 +1.3 747,666 + Psyr_0659 0.56 -0.5 747,666 + Psyr_0659 0.56 +0.6 747,716 + Psyr_0659 0.61 -2.9 747,716 + Psyr_0659 0.61 +2.0 747,717 - Psyr_0659 0.61 +0.4 747,717 - Psyr_0659 0.61 +1.0 747,871 - Psyr_0659 0.78 +0.2 747,871 - Psyr_0659 0.78 -1.0 747,871 - Psyr_0659 0.78 +1.3 747,992 + -0.9 748,034 + -0.3 748,034 + +0.4 748,034 + -0.9 748,035 - -0.6 748,035 - +0.7 748,035 - -2.0 748,035 - +0.3 748,035 - +2.8 748,035 - +2.0 748,035 - +2.5 748,048 + -0.8 748,048 + -2.0 748,049 - +1.4 748,049 - -0.6 748,049 - -0.6 748,074 + -1.2 748,098 + +0.2 748,098 + +0.9 748,123 + -0.3 748,222 - +1.0 748,270 + -1.6 748,270 + -0.8 748,270 + +0.7 748,271 - -0.3 748,271 - +0.5 748,271 - -0.0 748,271 - +0.4 748,271 - -0.4 748,271 - +1.4 748,271 - -0.6 748,271 - -0.1 748,288 + +1.5 748,289 - -2.5 748,299 - +0.1 748,367 + +0.3 748,368 - -0.2 748,404 - +0.0 748,404 - -0.2 748,410 + -0.7 748,412 + -0.2 748,412 + -0.6 748,412 + -3.2 748,413 - +0.6 748,413 - +0.7 748,413 - +0.2 748,423 - -0.5 748,423 - +1.2 748,423 - +1.4 748,423 - +0.4 748,426 + +0.2 748,426 + -0.7 748,426 + +0.6 748,426 + -1.3 748,426 + -1.4 748,426 + +0.3 748,426 + +0.4 748,426 + -0.8 748,426 + +0.0 748,427 - +0.1 748,427 - -0.6 748,427 - -0.5 748,427 - +0.1 748,427 - +0.5 748,428 + +0.1 748,428 + +0.8 748,428 + -1.2 748,428 + -0.3 748,428 + -1.6 748,429 - +0.7 748,429 - +0.2 748,429 - -0.1 748,429 - +0.4 748,429 - +1.3 748,429 - -1.0 748,483 + -2.7 748,483 + -1.7 748,483 + -0.7 748,483 + -0.3 748,483 + +0.7 748,484 - +1.8 748,484 - +0.6 748,484 - +0.1 748,484 - +0.4 748,484 - +1.2 748,484 - -1.0 748,484 - -2.8 748,484 - +0.9 748,599 + Psyr_0660 0.12 +1.7 748,599 + Psyr_0660 0.12 +0.4 748,599 + Psyr_0660 0.12 +0.6 748,600 - Psyr_0660 0.13 +0.1 748,792 - Psyr_0660 0.40 +0.4 748,926 - Psyr_0660 0.60 -0.4 748,926 - Psyr_0660 0.60 +0.6 748,993 + Psyr_0660 0.69 -0.9 748,993 + Psyr_0660 0.69 -1.2 748,993 + Psyr_0660 0.69 -0.0 748,993 + Psyr_0660 0.69 +0.0 748,993 + Psyr_0660 0.69 -0.9 748,993 + Psyr_0660 0.69 +2.0 748,993 + Psyr_0660 0.69 -0.4 748,993 + Psyr_0660 0.69 -0.6 748,993 + Psyr_0660 0.69 +0.9 748,993 + Psyr_0660 0.69 -0.8 748,993 + Psyr_0660 0.69 +0.7 748,993 + Psyr_0660 0.69 +0.1 748,993 + Psyr_0660 0.69 +1.4 748,993 + Psyr_0660 0.69 +0.4 748,993 + Psyr_0660 0.69 -0.7 748,993 + Psyr_0660 0.69 -1.1 748,993 + Psyr_0660 0.69 +1.3 748,993 + Psyr_0660 0.69 -0.3 748,993 + Psyr_0660 0.69 -0.6 748,993 + Psyr_0660 0.69 +0.5 748,993 + Psyr_0660 0.69 +0.3 748,993 + Psyr_0660 0.69 -2.6 748,993 + Psyr_0660 0.69 +1.4 748,994 - Psyr_0660 0.69 -0.6 748,994 - Psyr_0660 0.69 +0.1 748,994 - Psyr_0660 0.69 +0.9 748,994 - Psyr_0660 0.69 -0.4 748,994 - Psyr_0660 0.69 -0.5 748,994 - Psyr_0660 0.69 -2.8 748,994 - Psyr_0660 0.69 -1.2 748,994 - Psyr_0660 0.69 +1.6 748,994 - Psyr_0660 0.69 +0.8 748,994 - -2.0 748,994 - Psyr_0660 0.69 -0.6 748,994 - Psyr_0660 0.69 +0.2 748,994 - Psyr_0660 0.69 +0.3 748,994 - Psyr_0660 0.69 +0.2 748,994 - Psyr_0660 0.69 +1.1 748,994 - Psyr_0660 0.69 -0.2 748,994 - Psyr_0660 0.69 -2.7 748,994 - Psyr_0660 0.69 +1.2 748,994 - Psyr_0660 0.69 +0.1 748,994 - Psyr_0660 0.69 -1.9 748,994 - Psyr_0660 0.69 -0.4 748,994 - Psyr_0660 0.69 +1.1 748,994 - Psyr_0660 0.69 +2.2 748,994 - Psyr_0660 0.69 +0.5 748,994 - Psyr_0660 0.69 -0.8 748,997 + Psyr_0660 0.70 +0.9
Or see this region's nucleotide sequence