Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0629 and Psyr_0630 are separated by 225 nucleotides Psyr_0630 and Psyr_0631 overlap by 4 nucleotides Psyr_0631 and Psyr_0632 overlap by 8 nucleotides
Psyr_0629: Psyr_0629 - Aldehyde dehydrogenase (NAD+), at 718,804 to 720,324
_0629
Psyr_0630: Psyr_0630 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 720,550 to 721,899
_0630
Psyr_0631: Psyr_0631 - Flavoprotein, at 721,896 to 722,525
_0631
Psyr_0632: Psyr_0632 - Protein of unknown function DUF1375, at 722,518 to 722,802
_0632
Position (kb) 720
721
722 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 719.854 kb on + strand, within Psyr_0629 at 719.879 kb on + strand, within Psyr_0629 at 719.879 kb on + strand, within Psyr_0629 at 719.880 kb on - strand, within Psyr_0629 at 719.890 kb on - strand, within Psyr_0629 at 720.221 kb on + strand at 720.221 kb on + strand at 720.221 kb on + strand at 720.222 kb on - strand at 720.222 kb on - strand at 720.222 kb on - strand at 720.260 kb on + strand at 720.260 kb on + strand at 720.260 kb on + strand at 720.260 kb on + strand at 720.260 kb on + strand at 720.260 kb on + strand at 720.261 kb on - strand at 720.261 kb on - strand at 720.261 kb on - strand at 720.261 kb on - strand at 720.261 kb on - strand at 720.261 kb on - strand at 720.261 kb on - strand at 720.264 kb on + strand at 720.264 kb on + strand at 720.265 kb on - strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.403 kb on + strand at 720.404 kb on - strand at 720.404 kb on - strand at 720.436 kb on + strand at 720.436 kb on + strand at 720.436 kb on + strand at 720.437 kb on - strand at 720.442 kb on + strand at 720.442 kb on + strand at 720.442 kb on + strand at 720.443 kb on - strand at 720.443 kb on - strand at 720.443 kb on - strand at 720.443 kb on - strand at 720.469 kb on - strand at 720.514 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.706 kb on + strand, within Psyr_0630 at 720.706 kb on + strand, within Psyr_0630 at 720.787 kb on + strand, within Psyr_0630 at 720.787 kb on + strand, within Psyr_0630 at 720.787 kb on + strand, within Psyr_0630 at 720.811 kb on + strand, within Psyr_0630 at 721.075 kb on + strand, within Psyr_0630 at 721.524 kb on + strand, within Psyr_0630 at 721.524 kb on + strand, within Psyr_0630 at 721.524 kb on + strand, within Psyr_0630 at 721.524 kb on + strand, within Psyr_0630 at 721.524 kb on + strand, within Psyr_0630 at 721.524 kb on + strand, within Psyr_0630 at 721.524 kb on + strand, within Psyr_0630 at 721.528 kb on + strand, within Psyr_0630 at 721.528 kb on + strand, within Psyr_0630 at 721.528 kb on + strand, within Psyr_0630 at 721.528 kb on + strand, within Psyr_0630 at 721.528 kb on + strand, within Psyr_0630 at 721.528 kb on + strand, within Psyr_0630 at 721.528 kb on + strand, within Psyr_0630 at 722.507 kb on + strand at 722.507 kb on + strand at 722.523 kb on + strand at 722.524 kb on - strand at 722.524 kb on - strand at 722.524 kb on - strand at 722.524 kb on - strand at 722.614 kb on + strand, within Psyr_0632 at 722.614 kb on + strand, within Psyr_0632 at 722.614 kb on + strand, within Psyr_0632 at 722.614 kb on + strand, within Psyr_0632 at 722.614 kb on + strand, within Psyr_0632 at 722.614 kb on + strand, within Psyr_0632 at 722.614 kb on + strand, within Psyr_0632 at 722.615 kb on - strand, within Psyr_0632 at 722.615 kb on - strand, within Psyr_0632 at 722.615 kb on - strand, within Psyr_0632 at 722.615 kb on - strand, within Psyr_0632 at 722.615 kb on - strand, within Psyr_0632 at 722.615 kb on - strand, within Psyr_0632 at 722.615 kb on - strand, within Psyr_0632 at 722.615 kb on - strand, within Psyr_0632 at 722.615 kb on - strand, within Psyr_0632 at 722.615 kb on - strand, within Psyr_0632 at 722.634 kb on + strand, within Psyr_0632 at 722.634 kb on + strand, within Psyr_0632 at 722.634 kb on + strand, within Psyr_0632 at 722.634 kb on + strand, within Psyr_0632 at 722.634 kb on + strand, within Psyr_0632 at 722.634 kb on + strand, within Psyr_0632 at 722.634 kb on + strand, within Psyr_0632 at 722.634 kb on + strand, within Psyr_0632 at 722.634 kb on + strand, within Psyr_0632 at 722.634 kb on + strand, within Psyr_0632 at 722.634 kb on + strand, within Psyr_0632 at 722.634 kb on + strand, within Psyr_0632 at 722.634 kb on + strand, within Psyr_0632 at 722.634 kb on + strand, within Psyr_0632 at 722.634 kb on + strand, within Psyr_0632 at 722.635 kb on - strand, within Psyr_0632 at 722.635 kb on - strand, within Psyr_0632 at 722.635 kb on - strand, within Psyr_0632 at 722.635 kb on - strand, within Psyr_0632 at 722.635 kb on - strand, within Psyr_0632 at 722.635 kb on - strand, within Psyr_0632 at 722.635 kb on - strand, within Psyr_0632 at 722.635 kb on - strand, within Psyr_0632 at 722.635 kb on - strand, within Psyr_0632 at 722.635 kb on - strand, within Psyr_0632 at 722.635 kb on - strand, within Psyr_0632 at 722.635 kb on - strand, within Psyr_0632 at 722.638 kb on + strand, within Psyr_0632 at 722.638 kb on + strand, within Psyr_0632 at 722.638 kb on + strand, within Psyr_0632 at 722.638 kb on + strand, within Psyr_0632 at 722.638 kb on + strand, within Psyr_0632 at 722.638 kb on + strand, within Psyr_0632 at 722.638 kb on + strand, within Psyr_0632 at 722.638 kb on + strand, within Psyr_0632 at 722.638 kb on + strand, within Psyr_0632 at 722.638 kb on + strand, within Psyr_0632 at 722.638 kb on + strand, within Psyr_0632 at 722.638 kb on + strand, within Psyr_0632 at 722.638 kb on + strand, within Psyr_0632 at 722.639 kb on - strand, within Psyr_0632 at 722.639 kb on - strand, within Psyr_0632 at 722.639 kb on - strand, within Psyr_0632 at 722.639 kb on - strand, within Psyr_0632 at 722.639 kb on - strand, within Psyr_0632 at 722.639 kb on - strand, within Psyr_0632 at 722.639 kb on - strand, within Psyr_0632 at 722.639 kb on - strand, within Psyr_0632 at 722.639 kb on - strand, within Psyr_0632 at 722.639 kb on - strand, within Psyr_0632 at 722.695 kb on + strand, within Psyr_0632 at 722.801 kb on - strand at 722.838 kb on + strand at 722.838 kb on + strand at 722.839 kb on - strand at 722.839 kb on - strand at 722.839 kb on - strand at 722.840 kb on + strand at 722.841 kb on - strand at 722.841 kb on - strand at 722.841 kb on - strand at 722.841 kb on - strand at 722.841 kb on - strand at 722.841 kb on - strand at 722.841 kb on - strand at 722.842 kb on + strand at 722.842 kb on + strand at 722.842 kb on + strand at 722.842 kb on + strand at 722.842 kb on + strand at 722.842 kb on + strand at 722.843 kb on - strand at 722.843 kb on - strand at 722.843 kb on - strand at 722.843 kb on - strand at 722.843 kb on - strand at 722.843 kb on - strand at 722.843 kb on - strand at 722.843 kb on - strand at 722.843 kb on - strand at 722.843 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 719,854 + Psyr_0629 0.69 +0.3 719,879 + Psyr_0629 0.71 +1.2 719,879 + Psyr_0629 0.71 +0.8 719,880 - Psyr_0629 0.71 +0.9 719,890 - Psyr_0629 0.71 -1.1 720,221 + -0.3 720,221 + -0.2 720,221 + +1.2 720,222 - -0.1 720,222 - +0.6 720,222 - -0.3 720,260 + +0.8 720,260 + -0.4 720,260 + -1.7 720,260 + -0.5 720,260 + +2.4 720,260 + +0.3 720,261 - +0.9 720,261 - +0.6 720,261 - +0.5 720,261 - +1.9 720,261 - -0.2 720,261 - -0.7 720,261 - -0.3 720,264 + -1.6 720,264 + -1.6 720,265 - -0.4 720,327 + +0.7 720,327 + -0.4 720,327 + +0.1 720,327 + +0.7 720,327 + -0.9 720,327 + -2.0 720,327 + +0.7 720,327 + -0.4 720,327 + +0.7 720,327 + -0.4 720,327 + +0.4 720,327 + -1.6 720,327 + -0.5 720,328 - -0.0 720,328 - +0.4 720,328 - +0.8 720,328 - -2.4 720,328 - -0.5 720,328 - -0.8 720,328 - +0.3 720,328 - -0.6 720,328 - -0.5 720,328 - +1.2 720,328 - +2.5 720,328 - -1.4 720,328 - -0.8 720,328 - +0.7 720,328 - -0.7 720,328 - -0.1 720,403 + +1.7 720,404 - -0.6 720,404 - -1.3 720,436 + -1.8 720,436 + -0.2 720,436 + +2.1 720,437 - -1.6 720,442 + -1.7 720,442 + -0.4 720,442 + -0.0 720,443 - -2.3 720,443 - +1.4 720,443 - +2.4 720,443 - +0.2 720,469 - -0.9 720,514 + -0.6 720,555 + -2.4 720,555 + -0.3 720,555 + -2.2 720,555 + -1.6 720,555 + -1.3 720,555 + -2.4 720,555 + -2.8 720,555 + +0.0 720,555 + +0.6 720,555 + -1.9 720,555 + -3.9 720,706 + Psyr_0630 0.12 +0.3 720,706 + Psyr_0630 0.12 -0.4 720,787 + Psyr_0630 0.18 -1.3 720,787 + Psyr_0630 0.18 -1.3 720,787 + Psyr_0630 0.18 -0.9 720,811 + Psyr_0630 0.19 -1.4 721,075 + Psyr_0630 0.39 -2.4 721,524 + Psyr_0630 0.72 -0.6 721,524 + Psyr_0630 0.72 +0.9 721,524 + Psyr_0630 0.72 -1.7 721,524 + Psyr_0630 0.72 -1.1 721,524 + Psyr_0630 0.72 -4.2 721,524 + Psyr_0630 0.72 -0.9 721,524 + Psyr_0630 0.72 -1.6 721,528 + Psyr_0630 0.72 -0.2 721,528 + Psyr_0630 0.72 -3.3 721,528 + Psyr_0630 0.72 -2.0 721,528 + Psyr_0630 0.72 +0.9 721,528 + Psyr_0630 0.72 -3.0 721,528 + Psyr_0630 0.72 -3.5 721,528 + Psyr_0630 0.72 -1.6 722,507 + -0.3 722,507 + -0.3 722,523 + +1.8 722,524 - +0.6 722,524 - +0.4 722,524 - -0.4 722,524 - -0.7 722,614 + Psyr_0632 0.34 -2.0 722,614 + Psyr_0632 0.34 +0.4 722,614 + Psyr_0632 0.34 -0.4 722,614 + Psyr_0632 0.34 -0.1 722,614 + Psyr_0632 0.34 +1.8 722,614 + Psyr_0632 0.34 -0.7 722,614 + Psyr_0632 0.34 +0.2 722,615 - Psyr_0632 0.34 -1.7 722,615 - Psyr_0632 0.34 +1.3 722,615 - Psyr_0632 0.34 -2.3 722,615 - Psyr_0632 0.34 -0.5 722,615 - Psyr_0632 0.34 +2.4 722,615 - Psyr_0632 0.34 +0.4 722,615 - Psyr_0632 0.34 +0.3 722,615 - Psyr_0632 0.34 -0.9 722,615 - Psyr_0632 0.34 +0.4 722,615 - Psyr_0632 0.34 -0.2 722,634 + Psyr_0632 0.41 +0.7 722,634 + Psyr_0632 0.41 -0.3 722,634 + Psyr_0632 0.41 -2.0 722,634 + Psyr_0632 0.41 +2.8 722,634 + Psyr_0632 0.41 -0.1 722,634 + Psyr_0632 0.41 +0.7 722,634 + Psyr_0632 0.41 -1.1 722,634 + Psyr_0632 0.41 -0.9 722,634 + Psyr_0632 0.41 -1.6 722,634 + Psyr_0632 0.41 +0.2 722,634 + Psyr_0632 0.41 +0.1 722,634 + Psyr_0632 0.41 +0.5 722,634 + Psyr_0632 0.41 +1.3 722,634 + Psyr_0632 0.41 -1.1 722,634 + Psyr_0632 0.41 -2.1 722,635 - Psyr_0632 0.41 -1.4 722,635 - Psyr_0632 0.41 +0.3 722,635 - Psyr_0632 0.41 +0.8 722,635 - Psyr_0632 0.41 +0.1 722,635 - Psyr_0632 0.41 +0.9 722,635 - Psyr_0632 0.41 -1.3 722,635 - Psyr_0632 0.41 -0.5 722,635 - Psyr_0632 0.41 +1.9 722,635 - Psyr_0632 0.41 -1.2 722,635 - Psyr_0632 0.41 +0.8 722,635 - Psyr_0632 0.41 +0.3 722,635 - Psyr_0632 0.41 +0.3 722,638 + Psyr_0632 0.42 +1.4 722,638 + Psyr_0632 0.42 -1.1 722,638 + Psyr_0632 0.42 +0.3 722,638 + Psyr_0632 0.42 -0.1 722,638 + Psyr_0632 0.42 +1.2 722,638 + Psyr_0632 0.42 -0.1 722,638 + Psyr_0632 0.42 +1.4 722,638 + Psyr_0632 0.42 -2.1 722,638 + Psyr_0632 0.42 +0.4 722,638 + Psyr_0632 0.42 +0.2 722,638 + Psyr_0632 0.42 +0.2 722,638 + Psyr_0632 0.42 -0.5 722,638 + Psyr_0632 0.42 -3.1 722,639 - Psyr_0632 0.42 -0.6 722,639 - Psyr_0632 0.42 +0.0 722,639 - Psyr_0632 0.42 +1.2 722,639 - Psyr_0632 0.42 +0.1 722,639 - Psyr_0632 0.42 +1.1 722,639 - Psyr_0632 0.42 +0.3 722,639 - Psyr_0632 0.42 -0.8 722,639 - Psyr_0632 0.42 -0.9 722,639 - Psyr_0632 0.42 +1.1 722,639 - Psyr_0632 0.42 +1.3 722,695 + Psyr_0632 0.62 +0.6 722,801 - +0.1 722,838 + +2.4 722,838 + +1.6 722,839 - -0.0 722,839 - -2.0 722,839 - -0.7 722,840 + +0.7 722,841 - +0.4 722,841 - -0.3 722,841 - +0.0 722,841 - +1.1 722,841 - +0.8 722,841 - -0.9 722,841 - -2.0 722,842 + -0.9 722,842 + +0.0 722,842 + -0.1 722,842 + +0.9 722,842 + -0.1 722,842 + -1.0 722,843 - +1.7 722,843 - +1.4 722,843 - +0.4 722,843 - -1.9 722,843 - -0.6 722,843 - +0.9 722,843 - -1.0 722,843 - -1.8 722,843 - +0.4 722,843 - -1.9
Or see this region's nucleotide sequence