Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0527 and Psyr_0528 are separated by 300 nucleotides Psyr_0528 and Psyr_0529 overlap by 17 nucleotides
Psyr_0527: Psyr_0527 - type III effector HopAC1, at 589,549 to 595,677
_0527
Psyr_0528: Psyr_0528 - Carbamoyltransferase, at 595,978 to 597,735
_0528
Psyr_0529: Psyr_0529 - Glycosyl transferase, group 1, at 597,719 to 598,849
_0529
Position (kb) 595
596
597
598 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 595.004 kb on + strand, within Psyr_0527 at 595.024 kb on + strand, within Psyr_0527 at 595.024 kb on + strand, within Psyr_0527 at 595.171 kb on + strand at 595.172 kb on - strand at 595.259 kb on + strand at 595.624 kb on + strand at 595.750 kb on + strand at 595.778 kb on + strand at 595.778 kb on + strand at 595.778 kb on + strand at 595.778 kb on + strand at 595.778 kb on + strand at 595.779 kb on - strand at 595.779 kb on - strand at 595.779 kb on - strand at 595.782 kb on + strand at 595.782 kb on + strand at 595.782 kb on + strand at 595.782 kb on + strand at 595.782 kb on + strand at 595.782 kb on + strand at 595.783 kb on - strand at 595.783 kb on - strand at 595.786 kb on + strand at 595.786 kb on + strand at 595.786 kb on + strand at 595.787 kb on - strand at 595.787 kb on - strand at 595.787 kb on - strand at 595.787 kb on - strand at 595.814 kb on + strand at 595.875 kb on + strand at 595.875 kb on + strand at 595.880 kb on + strand at 595.895 kb on + strand at 595.961 kb on + strand at 595.976 kb on + strand at 596.038 kb on + strand at 596.749 kb on + strand, within Psyr_0528 at 596.749 kb on + strand, within Psyr_0528 at 597.043 kb on + strand, within Psyr_0528 at 597.043 kb on + strand, within Psyr_0528 at 597.043 kb on + strand, within Psyr_0528 at 597.122 kb on + strand, within Psyr_0528 at 597.122 kb on + strand, within Psyr_0528 at 597.520 kb on + strand, within Psyr_0528 at 597.718 kb on + strand at 597.718 kb on + strand at 597.719 kb on - strand at 597.744 kb on + strand at 597.764 kb on + strand at 597.797 kb on + strand at 597.797 kb on + strand at 597.912 kb on - strand, within Psyr_0529 at 597.912 kb on - strand, within Psyr_0529 at 598.022 kb on + strand, within Psyr_0529 at 598.022 kb on + strand, within Psyr_0529 at 598.022 kb on + strand, within Psyr_0529 at 598.022 kb on + strand, within Psyr_0529 at 598.022 kb on + strand, within Psyr_0529 at 598.022 kb on + strand, within Psyr_0529 at 598.022 kb on + strand, within Psyr_0529 at 598.022 kb on + strand, within Psyr_0529 at 598.023 kb on - strand, within Psyr_0529 at 598.023 kb on - strand, within Psyr_0529 at 598.023 kb on - strand, within Psyr_0529 at 598.026 kb on + strand, within Psyr_0529 at 598.026 kb on + strand, within Psyr_0529 at 598.217 kb on + strand, within Psyr_0529 at 598.517 kb on + strand, within Psyr_0529 at 598.517 kb on + strand, within Psyr_0529 at 598.685 kb on - strand, within Psyr_0529
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 595,004 + Psyr_0527 0.89 +1.3 595,024 + Psyr_0527 0.89 +1.2 595,024 + Psyr_0527 0.89 +0.7 595,171 + +0.1 595,172 - -0.3 595,259 + -0.1 595,624 + +1.4 595,750 + +1.3 595,778 + -1.1 595,778 + -2.7 595,778 + -1.2 595,778 + +3.1 595,778 + +1.1 595,779 - -1.0 595,779 - -1.6 595,779 - +0.3 595,782 + +0.6 595,782 + -0.3 595,782 + -1.3 595,782 + +0.2 595,782 + -0.1 595,782 + +2.8 595,783 - +0.7 595,783 - -0.4 595,786 + +1.0 595,786 + -0.7 595,786 + +0.3 595,787 - -1.8 595,787 - -2.4 595,787 - +1.5 595,787 - +0.8 595,814 + -0.2 595,875 + -2.1 595,875 + -0.5 595,880 + +0.5 595,895 + -1.6 595,961 + -0.5 595,976 + -1.3 596,038 + +1.4 596,749 + Psyr_0528 0.44 -1.3 596,749 + Psyr_0528 0.44 -1.3 597,043 + Psyr_0528 0.61 +0.7 597,043 + Psyr_0528 0.61 -0.8 597,043 + Psyr_0528 0.61 -2.2 597,122 + Psyr_0528 0.65 -0.1 597,122 + Psyr_0528 0.65 +1.8 597,520 + Psyr_0528 0.88 -1.6 597,718 + -1.7 597,718 + +0.8 597,719 - +0.5 597,744 + -2.9 597,764 + -3.0 597,797 + -2.7 597,797 + -3.6 597,912 - Psyr_0529 0.17 -1.1 597,912 - Psyr_0529 0.17 +0.7 598,022 + Psyr_0529 0.27 -1.8 598,022 + Psyr_0529 0.27 -2.5 598,022 + Psyr_0529 0.27 -1.8 598,022 + Psyr_0529 0.27 -2.1 598,022 + Psyr_0529 0.27 -2.1 598,022 + Psyr_0529 0.27 -0.8 598,022 + Psyr_0529 0.27 -1.5 598,022 + Psyr_0529 0.27 -1.1 598,023 - Psyr_0529 0.27 -0.5 598,023 - Psyr_0529 0.27 -0.1 598,023 - Psyr_0529 0.27 -3.2 598,026 + Psyr_0529 0.27 -1.5 598,026 + Psyr_0529 0.27 -1.9 598,217 + Psyr_0529 0.44 -1.1 598,517 + Psyr_0529 0.71 -1.7 598,517 + Psyr_0529 0.71 -2.7 598,685 - Psyr_0529 0.85 -1.3
Or see this region's nucleotide sequence