Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0412

Experiment: epiphytic; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0411 and Psyr_0412 are separated by 118 nucleotidesPsyr_0412 and Psyr_0413 are separated by 333 nucleotides Psyr_0411: Psyr_0411 - glutamate synthase (NADPH) large subunit, at 442,293 to 446,738 _0411 Psyr_0412: Psyr_0412 - glutamate synthase (NADPH) small subunit, at 446,857 to 448,275 _0412 Psyr_0413: Psyr_0413 - conserved hypothetical protein, at 448,609 to 451,833 _0413 Position (kb) 446 447 448 449Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 445.989 kb on + strand, within Psyr_0411at 446.090 kb on + strand, within Psyr_0411at 446.157 kb on + strand, within Psyr_0411at 446.157 kb on + strand, within Psyr_0411at 446.157 kb on + strand, within Psyr_0411at 446.157 kb on + strand, within Psyr_0411at 446.157 kb on + strand, within Psyr_0411at 446.157 kb on + strand, within Psyr_0411at 446.158 kb on - strand, within Psyr_0411at 446.158 kb on - strand, within Psyr_0411at 446.181 kb on + strand, within Psyr_0411at 446.182 kb on - strand, within Psyr_0411at 446.284 kb on - strand, within Psyr_0411at 446.346 kb on - strandat 446.346 kb on - strandat 446.360 kb on + strandat 446.360 kb on + strandat 446.360 kb on + strandat 446.360 kb on + strandat 446.360 kb on + strandat 446.360 kb on + strandat 446.361 kb on - strandat 446.397 kb on + strandat 446.397 kb on + strandat 446.397 kb on + strandat 446.397 kb on + strandat 446.398 kb on - strandat 446.440 kb on - strandat 446.476 kb on - strandat 446.566 kb on - strandat 446.598 kb on + strandat 446.599 kb on - strandat 446.599 kb on - strandat 446.599 kb on - strandat 446.655 kb on + strandat 446.655 kb on + strandat 446.655 kb on + strandat 446.655 kb on + strandat 446.656 kb on - strandat 446.904 kb on + strandat 446.904 kb on + strandat 446.905 kb on - strandat 447.025 kb on + strand, within Psyr_0412at 447.026 kb on - strand, within Psyr_0412at 447.094 kb on - strand, within Psyr_0412at 447.238 kb on + strand, within Psyr_0412at 447.238 kb on + strand, within Psyr_0412at 447.238 kb on + strand, within Psyr_0412at 447.238 kb on + strand, within Psyr_0412at 447.238 kb on + strand, within Psyr_0412at 447.239 kb on - strand, within Psyr_0412at 447.239 kb on - strand, within Psyr_0412at 447.239 kb on - strand, within Psyr_0412at 447.239 kb on - strand, within Psyr_0412at 447.239 kb on - strand, within Psyr_0412at 447.239 kb on - strand, within Psyr_0412at 447.239 kb on - strand, within Psyr_0412at 447.239 kb on - strand, within Psyr_0412at 447.239 kb on - strand, within Psyr_0412at 447.559 kb on + strand, within Psyr_0412at 447.560 kb on - strand, within Psyr_0412at 447.560 kb on - strand, within Psyr_0412at 447.560 kb on - strand, within Psyr_0412at 447.560 kb on - strand, within Psyr_0412at 447.589 kb on + strand, within Psyr_0412at 447.589 kb on + strand, within Psyr_0412at 447.589 kb on + strand, within Psyr_0412at 447.589 kb on + strand, within Psyr_0412at 447.589 kb on + strand, within Psyr_0412at 447.589 kb on + strand, within Psyr_0412at 447.589 kb on + strand, within Psyr_0412at 447.589 kb on + strand, within Psyr_0412at 447.589 kb on + strand, within Psyr_0412at 447.589 kb on + strand, within Psyr_0412at 447.589 kb on + strand, within Psyr_0412at 447.590 kb on - strand, within Psyr_0412at 447.590 kb on - strand, within Psyr_0412at 447.590 kb on - strand, within Psyr_0412at 447.590 kb on - strand, within Psyr_0412at 447.590 kb on - strand, within Psyr_0412at 447.590 kb on - strand, within Psyr_0412at 447.590 kb on - strand, within Psyr_0412at 447.590 kb on - strand, within Psyr_0412at 447.590 kb on - strand, within Psyr_0412at 447.590 kb on - strand, within Psyr_0412at 447.590 kb on - strand, within Psyr_0412at 447.590 kb on - strand, within Psyr_0412at 447.590 kb on - strand, within Psyr_0412at 447.590 kb on - strand, within Psyr_0412at 447.590 kb on - strand, within Psyr_0412at 447.590 kb on - strand, within Psyr_0412at 447.590 kb on - strand, within Psyr_0412at 447.595 kb on + strand, within Psyr_0412at 447.595 kb on + strand, within Psyr_0412at 447.595 kb on + strand, within Psyr_0412at 447.595 kb on + strand, within Psyr_0412at 447.595 kb on + strand, within Psyr_0412at 447.595 kb on + strand, within Psyr_0412at 447.595 kb on + strand, within Psyr_0412at 447.595 kb on + strand, within Psyr_0412at 447.595 kb on + strand, within Psyr_0412at 447.595 kb on + strand, within Psyr_0412at 447.595 kb on + strand, within Psyr_0412at 447.595 kb on + strand, within Psyr_0412at 447.596 kb on - strand, within Psyr_0412at 447.596 kb on - strand, within Psyr_0412at 447.596 kb on - strand, within Psyr_0412at 447.596 kb on - strand, within Psyr_0412at 447.596 kb on - strand, within Psyr_0412at 447.596 kb on - strand, within Psyr_0412at 447.596 kb on - strand, within Psyr_0412at 447.596 kb on - strand, within Psyr_0412at 447.892 kb on + strand, within Psyr_0412at 448.144 kb on + strandat 448.144 kb on + strandat 448.145 kb on - strandat 448.145 kb on - strandat 448.145 kb on - strandat 448.145 kb on - strandat 448.221 kb on + strandat 448.339 kb on + strandat 448.339 kb on + strandat 448.340 kb on - strandat 448.436 kb on - strandat 448.532 kb on - strandat 448.532 kb on - strandat 448.558 kb on + strandat 448.558 kb on + strandat 448.558 kb on + strandat 448.594 kb on + strandat 448.595 kb on - strandat 448.927 kb on - strandat 448.954 kb on + strand, within Psyr_0413at 448.954 kb on + strand, within Psyr_0413at 448.954 kb on + strand, within Psyr_0413at 448.955 kb on - strand, within Psyr_0413at 448.955 kb on - strand, within Psyr_0413at 448.955 kb on - strand, within Psyr_0413at 448.955 kb on - strand, within Psyr_0413at 448.955 kb on - strand, within Psyr_0413at 448.955 kb on - strand, within Psyr_0413at 448.955 kb on - strand, within Psyr_0413at 448.956 kb on + strand, within Psyr_0413at 448.956 kb on + strand, within Psyr_0413at 448.956 kb on + strand, within Psyr_0413at 448.956 kb on + strand, within Psyr_0413at 448.956 kb on + strand, within Psyr_0413at 448.957 kb on - strand, within Psyr_0413at 448.957 kb on - strand, within Psyr_0413at 448.957 kb on - strand, within Psyr_0413at 448.957 kb on - strand, within Psyr_0413at 449.052 kb on + strand, within Psyr_0413at 449.052 kb on + strand, within Psyr_0413at 449.053 kb on - strand, within Psyr_0413at 449.087 kb on + strand, within Psyr_0413at 449.087 kb on + strand, within Psyr_0413at 449.087 kb on + strand, within Psyr_0413at 449.087 kb on + strand, within Psyr_0413at 449.088 kb on - strand, within Psyr_0413at 449.088 kb on - strand, within Psyr_0413at 449.088 kb on - strand, within Psyr_0413at 449.088 kb on - strand, within Psyr_0413at 449.088 kb on - strand, within Psyr_0413at 449.088 kb on - strand, within Psyr_0413at 449.088 kb on - strand, within Psyr_0413

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Green bean
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445,989 + Psyr_0411 0.83 -1.0
446,090 + Psyr_0411 0.85 -3.4
446,157 + Psyr_0411 0.87 +2.8
446,157 + Psyr_0411 0.87 -1.0
446,157 + Psyr_0411 0.87 -0.8
446,157 + Psyr_0411 0.87 +1.0
446,157 + Psyr_0411 0.87 -1.6
446,157 + Psyr_0411 0.87 -1.0
446,158 - Psyr_0411 0.87 +0.1
446,158 - Psyr_0411 0.87 -2.2
446,181 + Psyr_0411 0.87 -1.6
446,182 - Psyr_0411 0.87 -3.2
446,284 - Psyr_0411 0.90 -0.7
446,346 - -0.6
446,346 - +0.2
446,360 + -2.7
446,360 + -1.7
446,360 + -1.7
446,360 + -1.4
446,360 + -1.4
446,360 + -0.5
446,361 - -1.3
446,397 + -0.8
446,397 + -1.7
446,397 + -2.1
446,397 + -2.0
446,398 - -2.1
446,440 - +0.2
446,476 - -0.2
446,566 - -2.3
446,598 + -2.6
446,599 - -1.8
446,599 - -3.4
446,599 - -1.0
446,655 + -2.4
446,655 + -2.7
446,655 + -2.0
446,655 + -2.6
446,656 - -1.2
446,904 + -3.4
446,904 + +0.1
446,905 - -3.4
447,025 + Psyr_0412 0.12 +0.8
447,026 - Psyr_0412 0.12 -0.5
447,094 - Psyr_0412 0.17 -0.8
447,238 + Psyr_0412 0.27 +0.3
447,238 + Psyr_0412 0.27 -1.5
447,238 + Psyr_0412 0.27 -2.2
447,238 + Psyr_0412 0.27 +0.7
447,238 + Psyr_0412 0.27 +1.2
447,239 - Psyr_0412 0.27 -1.6
447,239 - Psyr_0412 0.27 -3.7
447,239 - Psyr_0412 0.27 -1.0
447,239 - Psyr_0412 0.27 +0.2
447,239 - Psyr_0412 0.27 -0.6
447,239 - Psyr_0412 0.27 -0.4
447,239 - Psyr_0412 0.27 -2.3
447,239 - Psyr_0412 0.27 -1.2
447,239 - Psyr_0412 0.27 -0.6
447,559 + Psyr_0412 0.49 -0.8
447,560 - Psyr_0412 0.50 -0.6
447,560 - Psyr_0412 0.50 +0.1
447,560 - Psyr_0412 0.50 -2.0
447,560 - Psyr_0412 0.50 -2.8
447,589 + Psyr_0412 0.52 -0.4
447,589 + Psyr_0412 0.52 -1.0
447,589 + Psyr_0412 0.52 +0.3
447,589 + Psyr_0412 0.52 -0.9
447,589 + Psyr_0412 0.52 -0.7
447,589 + Psyr_0412 0.52 -0.4
447,589 + Psyr_0412 0.52 -1.0
447,589 + Psyr_0412 0.52 -3.3
447,589 + Psyr_0412 0.52 +0.3
447,589 + Psyr_0412 0.52 -2.4
447,589 + Psyr_0412 0.52 -1.0
447,590 - Psyr_0412 0.52 +1.8
447,590 - Psyr_0412 0.52 -2.0
447,590 - Psyr_0412 0.52 -1.2
447,590 - Psyr_0412 0.52 -0.0
447,590 - Psyr_0412 0.52 -1.8
447,590 - Psyr_0412 0.52 +1.6
447,590 - Psyr_0412 0.52 -2.6
447,590 - Psyr_0412 0.52 -0.4
447,590 - Psyr_0412 0.52 -2.9
447,590 - Psyr_0412 0.52 -0.8
447,590 - Psyr_0412 0.52 -1.3
447,590 - Psyr_0412 0.52 -0.4
447,590 - Psyr_0412 0.52 -0.3
447,590 - Psyr_0412 0.52 +0.0
447,590 - Psyr_0412 0.52 -1.2
447,590 - Psyr_0412 0.52 -2.9
447,590 - Psyr_0412 0.52 +0.4
447,595 + Psyr_0412 0.52 +0.8
447,595 + Psyr_0412 0.52 -4.2
447,595 + Psyr_0412 0.52 -0.5
447,595 + Psyr_0412 0.52 -2.3
447,595 + Psyr_0412 0.52 +1.9
447,595 + Psyr_0412 0.52 -0.1
447,595 + Psyr_0412 0.52 +1.1
447,595 + Psyr_0412 0.52 -2.8
447,595 + Psyr_0412 0.52 -0.8
447,595 + Psyr_0412 0.52 -0.8
447,595 + Psyr_0412 0.52 -2.8
447,595 + Psyr_0412 0.52 -1.1
447,596 - Psyr_0412 0.52 -0.8
447,596 - Psyr_0412 0.52 -2.8
447,596 - Psyr_0412 0.52 +1.2
447,596 - Psyr_0412 0.52 -2.6
447,596 - Psyr_0412 0.52 +0.2
447,596 - Psyr_0412 0.52 -1.0
447,596 - Psyr_0412 0.52 -0.3
447,596 - Psyr_0412 0.52 -1.9
447,892 + Psyr_0412 0.73 -3.9
448,144 + -0.9
448,144 + -1.0
448,145 - +0.1
448,145 - -1.4
448,145 - -1.0
448,145 - -1.5
448,221 + -1.1
448,339 + +0.2
448,339 + +0.2
448,340 - +0.6
448,436 - -1.6
448,532 - +1.0
448,532 - -2.0
448,558 + +0.5
448,558 + -1.0
448,558 + -0.2
448,594 + +0.5
448,595 - +0.7
448,927 - -0.1
448,954 + Psyr_0413 0.11 +2.0
448,954 + Psyr_0413 0.11 -1.1
448,954 + Psyr_0413 0.11 -1.0
448,955 - Psyr_0413 0.11 -1.6
448,955 - Psyr_0413 0.11 +0.2
448,955 - Psyr_0413 0.11 +2.1
448,955 - Psyr_0413 0.11 +0.9
448,955 - Psyr_0413 0.11 -0.8
448,955 - Psyr_0413 0.11 +1.0
448,955 - Psyr_0413 0.11 -0.4
448,956 + Psyr_0413 0.11 +0.7
448,956 + Psyr_0413 0.11 +1.0
448,956 + Psyr_0413 0.11 -0.3
448,956 + Psyr_0413 0.11 +0.6
448,956 + Psyr_0413 0.11 +0.2
448,957 - Psyr_0413 0.11 -1.3
448,957 - Psyr_0413 0.11 +0.4
448,957 - Psyr_0413 0.11 -1.0
448,957 - Psyr_0413 0.11 +0.5
449,052 + Psyr_0413 0.14 -0.8
449,052 + Psyr_0413 0.14 +0.8
449,053 - Psyr_0413 0.14 +0.3
449,087 + Psyr_0413 0.15 -0.1
449,087 + Psyr_0413 0.15 -1.4
449,087 + Psyr_0413 0.15 -0.2
449,087 + Psyr_0413 0.15 -0.4
449,088 - Psyr_0413 0.15 -0.5
449,088 - Psyr_0413 0.15 -2.2
449,088 - Psyr_0413 0.15 +0.1
449,088 - Psyr_0413 0.15 +0.3
449,088 - Psyr_0413 0.15 +0.0
449,088 - Psyr_0413 0.15 +0.7
449,088 - Psyr_0413 0.15 -1.2

Or see this region's nucleotide sequence