Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0375 and Psyr_0376 are separated by 39 nucleotides Psyr_0376 and Psyr_0377 are separated by 263 nucleotides Psyr_0377 and Psyr_0378 overlap by 8 nucleotides
Psyr_0375: Psyr_0375 - prolyl aminopeptidase, Serine peptidase, MEROPS family S33, at 400,343 to 401,314
_0375
Psyr_0376: Psyr_0376 - D-tyrosyl-tRNA(Tyr) deacylase, at 401,354 to 401,791
_0376
Psyr_0377: Psyr_0377 - Periplasmic glucan biosynthesis protein, MdoG, at 402,055 to 403,983
_0377
Psyr_0378: Psyr_0378 - Glycosyl transferase, family 2, at 403,976 to 406,558
_0378
Position (kb) 402
403
404 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 401.133 kb on - strand, within Psyr_0375 at 401.133 kb on - strand, within Psyr_0375 at 401.353 kb on + strand at 401.353 kb on + strand at 401.353 kb on + strand at 401.353 kb on + strand at 401.353 kb on + strand at 401.353 kb on + strand at 401.354 kb on - strand at 401.354 kb on - strand at 401.354 kb on - strand at 401.354 kb on - strand at 401.354 kb on - strand at 401.354 kb on - strand at 401.354 kb on - strand at 401.433 kb on + strand, within Psyr_0376 at 401.433 kb on + strand, within Psyr_0376 at 401.434 kb on - strand, within Psyr_0376 at 401.451 kb on + strand, within Psyr_0376 at 401.452 kb on - strand, within Psyr_0376 at 401.483 kb on - strand, within Psyr_0376 at 401.675 kb on + strand, within Psyr_0376 at 401.712 kb on + strand, within Psyr_0376 at 401.754 kb on + strand at 401.785 kb on + strand at 401.785 kb on + strand at 401.785 kb on + strand at 401.785 kb on + strand at 401.785 kb on + strand at 401.785 kb on + strand at 401.785 kb on + strand at 401.786 kb on - strand at 401.789 kb on + strand at 401.789 kb on + strand at 401.789 kb on + strand at 401.789 kb on + strand at 401.789 kb on + strand at 401.789 kb on + strand at 401.789 kb on + strand at 401.789 kb on + strand at 401.789 kb on + strand at 401.789 kb on + strand at 401.789 kb on + strand at 401.789 kb on + strand at 401.789 kb on + strand at 401.789 kb on + strand at 401.790 kb on - strand at 401.790 kb on - strand at 401.790 kb on - strand at 401.790 kb on - strand at 401.790 kb on - strand at 401.790 kb on - strand at 401.790 kb on - strand at 401.790 kb on - strand at 401.790 kb on - strand at 401.790 kb on - strand at 401.790 kb on - strand at 401.790 kb on - strand at 401.794 kb on + strand at 401.794 kb on + strand at 401.795 kb on - strand at 401.807 kb on + strand at 401.807 kb on + strand at 401.807 kb on + strand at 401.807 kb on + strand at 401.807 kb on + strand at 401.808 kb on - strand at 401.808 kb on - strand at 401.853 kb on + strand at 401.853 kb on + strand at 401.853 kb on + strand at 401.853 kb on + strand at 401.853 kb on + strand at 401.854 kb on - strand at 401.854 kb on - strand at 401.965 kb on - strand at 402.106 kb on - strand at 402.106 kb on - strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.183 kb on - strand at 402.346 kb on + strand, within Psyr_0377 at 402.347 kb on - strand, within Psyr_0377 at 402.347 kb on - strand, within Psyr_0377 at 402.421 kb on + strand, within Psyr_0377 at 402.421 kb on + strand, within Psyr_0377 at 402.421 kb on + strand, within Psyr_0377 at 402.422 kb on - strand, within Psyr_0377 at 402.422 kb on - strand, within Psyr_0377 at 402.565 kb on + strand, within Psyr_0377 at 402.596 kb on - strand, within Psyr_0377 at 402.596 kb on - strand, within Psyr_0377 at 402.596 kb on - strand, within Psyr_0377 at 402.855 kb on + strand, within Psyr_0377 at 402.855 kb on + strand, within Psyr_0377 at 402.855 kb on + strand, within Psyr_0377 at 402.855 kb on + strand, within Psyr_0377 at 402.855 kb on + strand, within Psyr_0377 at 402.855 kb on + strand, within Psyr_0377 at 402.855 kb on + strand, within Psyr_0377 at 402.855 kb on + strand, within Psyr_0377 at 402.856 kb on - strand, within Psyr_0377 at 402.856 kb on - strand, within Psyr_0377 at 402.856 kb on - strand, within Psyr_0377 at 402.856 kb on - strand, within Psyr_0377 at 402.856 kb on - strand, within Psyr_0377 at 402.895 kb on - strand, within Psyr_0377 at 402.895 kb on - strand, within Psyr_0377 at 402.898 kb on + strand, within Psyr_0377 at 402.899 kb on - strand, within Psyr_0377 at 402.981 kb on + strand, within Psyr_0377 at 403.063 kb on + strand, within Psyr_0377 at 403.063 kb on + strand, within Psyr_0377 at 403.190 kb on + strand, within Psyr_0377 at 403.190 kb on + strand, within Psyr_0377 at 403.190 kb on + strand, within Psyr_0377 at 403.191 kb on - strand, within Psyr_0377 at 403.191 kb on - strand, within Psyr_0377 at 403.191 kb on - strand, within Psyr_0377 at 403.195 kb on + strand, within Psyr_0377 at 403.571 kb on - strand, within Psyr_0377 at 403.706 kb on + strand, within Psyr_0377 at 403.706 kb on + strand, within Psyr_0377 at 403.960 kb on + strand at 403.961 kb on - strand at 403.961 kb on - strand at 403.961 kb on - strand at 403.981 kb on + strand at 403.981 kb on + strand at 403.981 kb on + strand at 403.981 kb on + strand at 403.982 kb on - strand at 403.982 kb on - strand at 403.982 kb on - strand at 403.982 kb on - strand at 403.982 kb on - strand at 403.982 kb on - strand at 404.016 kb on - strand at 404.028 kb on + strand at 404.408 kb on + strand, within Psyr_0378 at 404.409 kb on - strand, within Psyr_0378 at 404.409 kb on - strand, within Psyr_0378 at 404.456 kb on + strand, within Psyr_0378 at 404.456 kb on + strand, within Psyr_0378 at 404.457 kb on - strand, within Psyr_0378 at 404.457 kb on - strand, within Psyr_0378 at 404.457 kb on - strand, within Psyr_0378 at 404.555 kb on + strand, within Psyr_0378 at 404.556 kb on - strand, within Psyr_0378 at 404.670 kb on - strand, within Psyr_0378 at 404.670 kb on - strand, within Psyr_0378 at 404.722 kb on + strand, within Psyr_0378 at 404.722 kb on + strand, within Psyr_0378 at 404.722 kb on + strand, within Psyr_0378 at 404.722 kb on + strand, within Psyr_0378 at 404.722 kb on + strand, within Psyr_0378 at 404.723 kb on - strand, within Psyr_0378 at 404.785 kb on + strand, within Psyr_0378 at 404.786 kb on - strand, within Psyr_0378 at 404.955 kb on + strand, within Psyr_0378 at 404.955 kb on + strand, within Psyr_0378
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 401,133 - Psyr_0375 0.81 -0.1 401,133 - Psyr_0375 0.81 -2.6 401,353 + +0.1 401,353 + +0.6 401,353 + +0.8 401,353 + +0.3 401,353 + +0.4 401,353 + +0.6 401,354 - +0.7 401,354 - +0.6 401,354 - -0.4 401,354 - -1.0 401,354 - -3.0 401,354 - +1.0 401,354 - -0.8 401,433 + Psyr_0376 0.18 +0.0 401,433 + Psyr_0376 0.18 +0.6 401,434 - Psyr_0376 0.18 -0.7 401,451 + Psyr_0376 0.22 +0.8 401,452 - Psyr_0376 0.22 +1.7 401,483 - Psyr_0376 0.29 -1.2 401,675 + Psyr_0376 0.73 +1.5 401,712 + Psyr_0376 0.82 +0.2 401,754 + +0.6 401,785 + -2.3 401,785 + -0.4 401,785 + -1.2 401,785 + +0.0 401,785 + +0.4 401,785 + -1.7 401,785 + -1.2 401,786 - -1.3 401,789 + -1.8 401,789 + -0.0 401,789 + +0.6 401,789 + +2.6 401,789 + +2.6 401,789 + +0.2 401,789 + -0.2 401,789 + +1.1 401,789 + -0.5 401,789 + +3.9 401,789 + +0.2 401,789 + +1.8 401,789 + +0.6 401,789 + +1.9 401,790 - +0.1 401,790 - -1.3 401,790 - +1.1 401,790 - -0.8 401,790 - -3.5 401,790 - -2.0 401,790 - -1.1 401,790 - -1.8 401,790 - +0.5 401,790 - +0.4 401,790 - -3.1 401,790 - -1.8 401,794 + +1.4 401,794 + +0.9 401,795 - -1.5 401,807 + -1.6 401,807 + -0.3 401,807 + +0.5 401,807 + -0.1 401,807 + -0.9 401,808 - -2.1 401,808 - -2.0 401,853 + +0.2 401,853 + +0.8 401,853 + +0.6 401,853 + +0.0 401,853 + +0.2 401,854 - -0.6 401,854 - +0.0 401,965 - +1.6 402,106 - -1.3 402,106 - -1.8 402,134 + -1.7 402,134 + -1.0 402,134 + -2.5 402,134 + -2.0 402,134 + -3.1 402,134 + -2.2 402,134 + -1.8 402,134 + -0.4 402,134 + -3.2 402,134 + -2.1 402,134 + +0.9 402,134 + -3.1 402,134 + -2.7 402,134 + -0.7 402,134 + -1.6 402,134 + -2.3 402,134 + +0.6 402,134 + -2.7 402,134 + -2.3 402,135 - -1.5 402,135 - +0.0 402,135 - -2.2 402,135 - -1.8 402,135 - -1.3 402,135 - -0.4 402,135 - -0.7 402,135 - -2.4 402,135 - -2.2 402,135 - -2.3 402,135 - -2.8 402,135 - +0.4 402,135 - -1.7 402,135 - -3.6 402,135 - -1.0 402,135 - -0.7 402,135 - +1.6 402,135 - -2.4 402,135 - -3.1 402,135 - -2.6 402,183 - -1.7 402,346 + Psyr_0377 0.15 -2.1 402,347 - Psyr_0377 0.15 -2.6 402,347 - Psyr_0377 0.15 -1.8 402,421 + Psyr_0377 0.19 -1.6 402,421 + Psyr_0377 0.19 +0.3 402,421 + Psyr_0377 0.19 -2.3 402,422 - Psyr_0377 0.19 -2.1 402,422 - Psyr_0377 0.19 -1.4 402,565 + Psyr_0377 0.26 -3.1 402,596 - Psyr_0377 0.28 -2.2 402,596 - Psyr_0377 0.28 -1.4 402,596 - Psyr_0377 0.28 -2.4 402,855 + Psyr_0377 0.41 -2.0 402,855 + Psyr_0377 0.41 -2.9 402,855 + Psyr_0377 0.41 -1.3 402,855 + Psyr_0377 0.41 -1.2 402,855 + Psyr_0377 0.41 -2.6 402,855 + Psyr_0377 0.41 -2.3 402,855 + Psyr_0377 0.41 -2.4 402,855 + Psyr_0377 0.41 -0.7 402,856 - Psyr_0377 0.42 -2.2 402,856 - Psyr_0377 0.42 -1.2 402,856 - Psyr_0377 0.42 -0.4 402,856 - Psyr_0377 0.42 -0.7 402,856 - Psyr_0377 0.42 -2.4 402,895 - Psyr_0377 0.44 -1.0 402,895 - Psyr_0377 0.44 -2.1 402,898 + Psyr_0377 0.44 -2.0 402,899 - Psyr_0377 0.44 -2.8 402,981 + Psyr_0377 0.48 -0.4 403,063 + Psyr_0377 0.52 -2.3 403,063 + Psyr_0377 0.52 -1.7 403,190 + Psyr_0377 0.59 -1.2 403,190 + Psyr_0377 0.59 -2.7 403,190 + Psyr_0377 0.59 -0.1 403,191 - Psyr_0377 0.59 +0.0 403,191 - Psyr_0377 0.59 +1.3 403,191 - Psyr_0377 0.59 -2.7 403,195 + Psyr_0377 0.59 -1.7 403,571 - Psyr_0377 0.79 -0.4 403,706 + Psyr_0377 0.86 -2.6 403,706 + Psyr_0377 0.86 -0.4 403,960 + -0.4 403,961 - -2.0 403,961 - -3.0 403,961 - -1.7 403,981 + +0.7 403,981 + -2.4 403,981 + -0.8 403,981 + -2.2 403,982 - -2.7 403,982 - -4.0 403,982 - -1.4 403,982 - -3.2 403,982 - -1.4 403,982 - -3.7 404,016 - +1.0 404,028 + -2.6 404,408 + Psyr_0378 0.17 -3.2 404,409 - Psyr_0378 0.17 -1.4 404,409 - Psyr_0378 0.17 -1.6 404,456 + Psyr_0378 0.19 -2.1 404,456 + Psyr_0378 0.19 -1.7 404,457 - Psyr_0378 0.19 -0.7 404,457 - Psyr_0378 0.19 +0.0 404,457 - Psyr_0378 0.19 -2.1 404,555 + Psyr_0378 0.22 -3.3 404,556 - Psyr_0378 0.22 -4.1 404,670 - Psyr_0378 0.27 -0.4 404,670 - Psyr_0378 0.27 -3.5 404,722 + Psyr_0378 0.29 -0.7 404,722 + Psyr_0378 0.29 +0.2 404,722 + Psyr_0378 0.29 -1.4 404,722 + Psyr_0378 0.29 -1.7 404,722 + Psyr_0378 0.29 -3.0 404,723 - Psyr_0378 0.29 -2.4 404,785 + Psyr_0378 0.31 -1.2 404,786 - Psyr_0378 0.31 -1.2 404,955 + Psyr_0378 0.38 -0.3 404,955 + Psyr_0378 0.38 -2.2
Or see this region's nucleotide sequence