Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0364 and Psyr_0365 are separated by 49 nucleotides Psyr_0365 and Psyr_0366 overlap by 4 nucleotides Psyr_0366 and Psyr_0367 are separated by 93 nucleotides
Psyr_0364: Psyr_0364 - sodium/proton antiporter, NhaA family, at 388,591 to 389,766
_0364
Psyr_0365: Psyr_0365 - protein of unknown function DUF886, at 389,816 to 390,412
_0365
Psyr_0366: Psyr_0366 - transcriptional regulator, GntR family, at 390,409 to 391,230
_0366
Psyr_0367: Psyr_0367 - formimidoylglutamate deiminase, at 391,324 to 392,688
_0367
Position (kb) 389
390
391 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 388.914 kb on + strand, within Psyr_0364 at 388.915 kb on - strand, within Psyr_0364 at 388.915 kb on - strand, within Psyr_0364 at 388.915 kb on - strand, within Psyr_0364 at 388.982 kb on + strand, within Psyr_0364 at 388.983 kb on - strand, within Psyr_0364 at 388.983 kb on - strand, within Psyr_0364 at 389.136 kb on - strand, within Psyr_0364 at 389.136 kb on - strand, within Psyr_0364 at 389.136 kb on - strand, within Psyr_0364 at 389.234 kb on + strand, within Psyr_0364 at 389.234 kb on + strand, within Psyr_0364 at 389.234 kb on + strand, within Psyr_0364 at 389.235 kb on - strand, within Psyr_0364 at 389.423 kb on + strand, within Psyr_0364 at 389.423 kb on + strand, within Psyr_0364 at 389.423 kb on + strand, within Psyr_0364 at 389.423 kb on + strand, within Psyr_0364 at 389.424 kb on - strand, within Psyr_0364 at 389.795 kb on - strand at 389.796 kb on + strand at 389.797 kb on - strand at 389.797 kb on - strand at 389.817 kb on + strand at 389.999 kb on - strand, within Psyr_0365 at 390.038 kb on + strand, within Psyr_0365 at 390.075 kb on + strand, within Psyr_0365 at 390.075 kb on + strand, within Psyr_0365 at 390.075 kb on + strand, within Psyr_0365 at 390.076 kb on - strand, within Psyr_0365 at 390.076 kb on - strand, within Psyr_0365 at 390.076 kb on - strand, within Psyr_0365 at 390.076 kb on - strand, within Psyr_0365 at 390.076 kb on - strand, within Psyr_0365 at 390.417 kb on + strand at 390.495 kb on + strand, within Psyr_0366 at 390.495 kb on + strand, within Psyr_0366 at 390.620 kb on + strand, within Psyr_0366 at 390.621 kb on - strand, within Psyr_0366 at 390.621 kb on - strand, within Psyr_0366 at 390.659 kb on + strand, within Psyr_0366 at 390.722 kb on + strand, within Psyr_0366 at 390.976 kb on + strand, within Psyr_0366 at 391.094 kb on + strand, within Psyr_0366 at 391.094 kb on + strand, within Psyr_0366 at 391.094 kb on + strand, within Psyr_0366 at 391.095 kb on - strand, within Psyr_0366 at 391.095 kb on - strand, within Psyr_0366 at 391.095 kb on - strand, within Psyr_0366 at 391.232 kb on - strand at 391.284 kb on + strand at 391.284 kb on + strand at 391.284 kb on + strand at 391.284 kb on + strand at 391.284 kb on + strand at 391.285 kb on - strand at 391.285 kb on - strand at 391.285 kb on - strand at 391.287 kb on - strand at 391.287 kb on - strand at 391.287 kb on - strand at 391.290 kb on + strand at 391.290 kb on + strand at 391.290 kb on + strand at 391.291 kb on - strand at 391.291 kb on - strand at 391.291 kb on - strand at 391.292 kb on + strand at 391.293 kb on - strand at 391.294 kb on + strand at 391.301 kb on + strand at 391.352 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 388,914 + Psyr_0364 0.27 -0.6 388,915 - Psyr_0364 0.28 +2.0 388,915 - Psyr_0364 0.28 +1.9 388,915 - Psyr_0364 0.28 -0.3 388,982 + Psyr_0364 0.33 +0.6 388,983 - Psyr_0364 0.33 -0.1 388,983 - Psyr_0364 0.33 -0.4 389,136 - Psyr_0364 0.46 +1.6 389,136 - Psyr_0364 0.46 +1.1 389,136 - Psyr_0364 0.46 +0.2 389,234 + Psyr_0364 0.55 -0.4 389,234 + Psyr_0364 0.55 +0.5 389,234 + Psyr_0364 0.55 +0.0 389,235 - Psyr_0364 0.55 +0.1 389,423 + Psyr_0364 0.71 -0.6 389,423 + Psyr_0364 0.71 +1.7 389,423 + Psyr_0364 0.71 -0.2 389,423 + Psyr_0364 0.71 -0.5 389,424 - Psyr_0364 0.71 +0.5 389,795 - -2.4 389,796 + -0.3 389,797 - -0.4 389,797 - +1.6 389,817 + -1.6 389,999 - Psyr_0365 0.31 +0.1 390,038 + Psyr_0365 0.37 +0.2 390,075 + Psyr_0365 0.43 -1.3 390,075 + Psyr_0365 0.43 -0.5 390,075 + Psyr_0365 0.43 -0.8 390,076 - Psyr_0365 0.44 -0.3 390,076 - Psyr_0365 0.44 -2.4 390,076 - Psyr_0365 0.44 -2.1 390,076 - Psyr_0365 0.44 -1.2 390,076 - Psyr_0365 0.44 -0.8 390,417 + +0.3 390,495 + Psyr_0366 0.10 -0.1 390,495 + Psyr_0366 0.10 -1.7 390,620 + Psyr_0366 0.26 -0.4 390,621 - Psyr_0366 0.26 +0.2 390,621 - Psyr_0366 0.26 -0.3 390,659 + Psyr_0366 0.30 -0.2 390,722 + Psyr_0366 0.38 +0.3 390,976 + Psyr_0366 0.69 -0.4 391,094 + Psyr_0366 0.83 +0.1 391,094 + Psyr_0366 0.83 +3.2 391,094 + Psyr_0366 0.83 -2.3 391,095 - Psyr_0366 0.83 +1.0 391,095 - Psyr_0366 0.83 +0.4 391,095 - Psyr_0366 0.83 -0.8 391,232 - +0.5 391,284 + +0.0 391,284 + +0.1 391,284 + +0.2 391,284 + +1.0 391,284 + +0.0 391,285 - +0.4 391,285 - -0.2 391,285 - +0.3 391,287 - -0.6 391,287 - -0.1 391,287 - -0.9 391,290 + +0.7 391,290 + +1.2 391,290 + +1.1 391,291 - +0.4 391,291 - -0.3 391,291 - -0.3 391,292 + +1.0 391,293 - -0.5 391,294 + -1.2 391,301 + -1.2 391,352 + +0.6
Or see this region's nucleotide sequence