Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0336 and Psyr_0337 are separated by 328 nucleotides Psyr_0337 and Psyr_0338 are separated by 16 nucleotides
Psyr_0336: Psyr_0336 - Outer membrane autotransporter barrel, at 355,995 to 358,982
_0336
Psyr_0337: Psyr_0337 - Taurine dioxygenase, at 359,311 to 360,207
_0337
Psyr_0338: Psyr_0338 - ABC transporter, at 360,224 to 361,099
_0338
Position (kb) 359
360
361 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 358.432 kb on + strand, within Psyr_0336 at 358.433 kb on - strand, within Psyr_0336 at 358.433 kb on - strand, within Psyr_0336 at 358.433 kb on - strand, within Psyr_0336 at 358.444 kb on + strand, within Psyr_0336 at 358.444 kb on + strand, within Psyr_0336 at 358.445 kb on - strand, within Psyr_0336 at 358.445 kb on - strand, within Psyr_0336 at 358.445 kb on - strand, within Psyr_0336 at 358.582 kb on + strand, within Psyr_0336 at 358.583 kb on - strand, within Psyr_0336 at 358.583 kb on - strand, within Psyr_0336 at 358.583 kb on - strand, within Psyr_0336 at 358.693 kb on + strand at 358.693 kb on + strand at 358.727 kb on + strand at 358.727 kb on + strand at 358.728 kb on - strand at 358.757 kb on + strand at 358.757 kb on + strand at 358.757 kb on + strand at 358.757 kb on + strand at 358.757 kb on + strand at 358.758 kb on - strand at 358.758 kb on - strand at 358.759 kb on + strand at 358.759 kb on + strand at 358.759 kb on + strand at 358.759 kb on + strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.798 kb on + strand at 358.798 kb on + strand at 358.799 kb on - strand at 358.799 kb on - strand at 358.991 kb on + strand at 358.991 kb on + strand at 358.991 kb on + strand at 358.991 kb on + strand at 358.991 kb on + strand at 358.992 kb on - strand at 358.992 kb on - strand at 358.992 kb on - strand at 358.992 kb on - strand at 359.046 kb on + strand at 359.047 kb on - strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.118 kb on + strand at 359.146 kb on + strand at 359.147 kb on - strand at 359.147 kb on - strand at 359.147 kb on - strand at 359.158 kb on + strand at 359.158 kb on + strand at 359.158 kb on + strand at 359.158 kb on + strand at 359.158 kb on + strand at 359.158 kb on + strand at 359.158 kb on + strand at 359.158 kb on + strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.176 kb on + strand at 359.176 kb on + strand at 359.176 kb on + strand at 359.176 kb on + strand at 359.176 kb on + strand at 359.176 kb on + strand at 359.176 kb on + strand at 359.176 kb on + strand at 359.177 kb on - strand at 359.177 kb on - strand at 359.177 kb on - strand at 359.177 kb on - strand at 359.191 kb on + strand at 359.192 kb on - strand at 359.659 kb on + strand, within Psyr_0337 at 359.659 kb on + strand, within Psyr_0337 at 359.660 kb on - strand, within Psyr_0337 at 359.680 kb on + strand, within Psyr_0337 at 359.680 kb on + strand, within Psyr_0337 at 359.680 kb on + strand, within Psyr_0337 at 359.680 kb on + strand, within Psyr_0337 at 359.680 kb on + strand, within Psyr_0337 at 359.681 kb on - strand, within Psyr_0337 at 359.681 kb on - strand, within Psyr_0337 at 359.681 kb on - strand, within Psyr_0337 at 359.681 kb on - strand, within Psyr_0337 at 359.681 kb on - strand, within Psyr_0337 at 359.714 kb on - strand, within Psyr_0337 at 359.833 kb on + strand, within Psyr_0337 at 359.833 kb on + strand, within Psyr_0337 at 359.834 kb on - strand, within Psyr_0337 at 359.834 kb on - strand, within Psyr_0337 at 359.845 kb on + strand, within Psyr_0337 at 359.909 kb on + strand, within Psyr_0337 at 359.910 kb on - strand, within Psyr_0337 at 359.910 kb on - strand, within Psyr_0337 at 359.910 kb on - strand, within Psyr_0337 at 359.910 kb on - strand, within Psyr_0337 at 360.043 kb on + strand, within Psyr_0337 at 360.043 kb on + strand, within Psyr_0337 at 360.043 kb on + strand, within Psyr_0337 at 360.043 kb on + strand, within Psyr_0337 at 360.044 kb on - strand, within Psyr_0337 at 360.044 kb on - strand, within Psyr_0337 at 360.044 kb on - strand, within Psyr_0337 at 360.044 kb on - strand, within Psyr_0337 at 360.074 kb on - strand, within Psyr_0337 at 360.647 kb on + strand, within Psyr_0338 at 360.647 kb on + strand, within Psyr_0338 at 360.648 kb on - strand, within Psyr_0338 at 360.940 kb on - strand, within Psyr_0338 at 360.965 kb on + strand, within Psyr_0338 at 360.965 kb on + strand, within Psyr_0338 at 360.966 kb on - strand, within Psyr_0338 at 360.966 kb on - strand, within Psyr_0338 at 360.966 kb on - strand, within Psyr_0338 at 361.016 kb on - strand at 361.016 kb on - strand at 361.095 kb on - strand at 361.113 kb on + strand at 361.114 kb on - strand at 361.169 kb on + strand at 361.169 kb on + strand at 361.198 kb on + strand at 361.199 kb on - strand at 361.199 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 358,432 + Psyr_0336 0.82 +1.0 358,433 - Psyr_0336 0.82 +0.6 358,433 - Psyr_0336 0.82 -0.4 358,433 - Psyr_0336 0.82 +1.8 358,444 + Psyr_0336 0.82 -1.6 358,444 + Psyr_0336 0.82 -2.0 358,445 - Psyr_0336 0.82 -0.1 358,445 - Psyr_0336 0.82 -0.4 358,445 - Psyr_0336 0.82 -0.1 358,582 + Psyr_0336 0.87 -0.3 358,583 - Psyr_0336 0.87 -1.2 358,583 - Psyr_0336 0.87 +0.1 358,583 - Psyr_0336 0.87 +0.5 358,693 + +0.9 358,693 + +0.3 358,727 + +0.7 358,727 + -1.7 358,728 - -0.8 358,757 + -0.7 358,757 + -1.3 358,757 + -0.3 358,757 + -1.2 358,757 + -1.7 358,758 - +0.1 358,758 - +1.6 358,759 + -0.1 358,759 + -1.5 358,759 + +0.7 358,759 + +3.3 358,760 - +1.2 358,760 - -0.2 358,760 - +1.7 358,760 - -0.4 358,760 - -2.3 358,760 - -0.2 358,760 - +0.3 358,760 - +0.7 358,760 - +0.4 358,798 + +0.2 358,798 + +0.5 358,799 - +1.3 358,799 - +0.5 358,991 + +1.5 358,991 + -2.1 358,991 + -1.5 358,991 + +0.8 358,991 + -2.9 358,992 - +0.6 358,992 - -1.5 358,992 - +0.4 358,992 - +0.9 359,046 + -1.5 359,047 - +0.3 359,064 + +1.6 359,064 + +0.2 359,064 + +1.5 359,064 + +0.3 359,064 + -1.4 359,064 + -0.4 359,064 + -0.8 359,064 + -0.3 359,064 + -0.9 359,064 + -0.1 359,065 - +0.4 359,065 - -0.5 359,065 - +0.5 359,065 - +0.6 359,065 - +0.4 359,065 - +0.5 359,065 - +1.5 359,065 - +0.3 359,065 - -0.1 359,065 - +3.5 359,065 - +0.1 359,065 - +0.9 359,065 - +2.0 359,065 - -0.9 359,065 - -0.4 359,065 - -0.0 359,065 - +1.5 359,065 - -0.7 359,065 - -0.3 359,065 - -1.8 359,118 + -1.2 359,146 + -2.7 359,147 - +0.3 359,147 - +0.8 359,147 - -0.2 359,158 + +0.6 359,158 + +0.1 359,158 + +1.2 359,158 + +0.5 359,158 + +0.1 359,158 + +0.3 359,158 + -0.2 359,158 + -0.9 359,159 - -2.4 359,159 - +0.5 359,159 - -2.0 359,159 - +0.6 359,159 - +1.4 359,159 - +0.4 359,159 - +1.1 359,159 - +0.2 359,159 - +0.9 359,176 + +1.2 359,176 + +0.7 359,176 + +0.2 359,176 + -1.5 359,176 + +0.3 359,176 + +1.6 359,176 + -0.2 359,176 + +2.5 359,177 - -0.8 359,177 - -2.1 359,177 - +0.9 359,177 - +0.1 359,191 + -0.5 359,192 - -0.2 359,659 + Psyr_0337 0.39 +1.6 359,659 + Psyr_0337 0.39 -1.0 359,660 - Psyr_0337 0.39 -2.4 359,680 + Psyr_0337 0.41 +0.8 359,680 + Psyr_0337 0.41 -0.6 359,680 + Psyr_0337 0.41 +0.4 359,680 + Psyr_0337 0.41 -3.1 359,680 + Psyr_0337 0.41 -2.3 359,681 - Psyr_0337 0.41 -1.7 359,681 - Psyr_0337 0.41 +0.9 359,681 - Psyr_0337 0.41 +2.6 359,681 - Psyr_0337 0.41 -0.0 359,681 - Psyr_0337 0.41 -1.0 359,714 - Psyr_0337 0.45 +0.7 359,833 + Psyr_0337 0.58 -0.3 359,833 + Psyr_0337 0.58 +0.7 359,834 - Psyr_0337 0.58 +1.3 359,834 - Psyr_0337 0.58 +1.6 359,845 + Psyr_0337 0.60 -0.2 359,909 + Psyr_0337 0.67 +0.4 359,910 - Psyr_0337 0.67 +2.7 359,910 - Psyr_0337 0.67 +2.5 359,910 - Psyr_0337 0.67 +0.2 359,910 - Psyr_0337 0.67 +1.6 360,043 + Psyr_0337 0.82 +1.6 360,043 + Psyr_0337 0.82 -0.3 360,043 + Psyr_0337 0.82 -1.4 360,043 + Psyr_0337 0.82 -1.7 360,044 - Psyr_0337 0.82 +0.1 360,044 - Psyr_0337 0.82 +0.1 360,044 - Psyr_0337 0.82 +0.3 360,044 - Psyr_0337 0.82 -1.3 360,074 - Psyr_0337 0.85 -0.5 360,647 + Psyr_0338 0.48 -1.2 360,647 + Psyr_0338 0.48 -0.3 360,648 - Psyr_0338 0.48 -0.8 360,940 - Psyr_0338 0.82 -2.0 360,965 + Psyr_0338 0.85 +1.3 360,965 + Psyr_0338 0.85 -0.2 360,966 - Psyr_0338 0.85 +0.6 360,966 - Psyr_0338 0.85 -0.8 360,966 - Psyr_0338 0.85 +0.3 361,016 - +0.1 361,016 - +0.2 361,095 - +0.8 361,113 + +0.1 361,114 - +0.1 361,169 + -1.4 361,169 + +1.5 361,198 + +2.2 361,199 - +1.6 361,199 - -0.4
Or see this region's nucleotide sequence