Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0266 and Psyr_0267 overlap by 4 nucleotides Psyr_0267 and Psyr_0268 are separated by 9 nucleotides Psyr_0268 and Psyr_0269 are separated by 221 nucleotides
Psyr_0266: Psyr_0266 - GGDEF domain protein, at 282,921 to 284,993
_0266
Psyr_0267: Psyr_0267 - Endonuclease/exonuclease/phosphatase, at 284,990 to 285,865
_0267
Psyr_0268: Psyr_0268 - DSBA oxidoreductase, at 285,875 to 286,519
_0268
Psyr_0269: Psyr_0269 - cell division checkpoint GTPase YihA, at 286,741 to 287,448
_0269
Position (kb) 284
285
286 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 284.087 kb on - strand, within Psyr_0266 at 284.362 kb on + strand, within Psyr_0266 at 284.362 kb on + strand, within Psyr_0266 at 284.363 kb on - strand, within Psyr_0266 at 284.363 kb on - strand, within Psyr_0266 at 284.363 kb on - strand, within Psyr_0266 at 284.363 kb on - strand, within Psyr_0266 at 284.363 kb on - strand, within Psyr_0266 at 284.366 kb on + strand, within Psyr_0266 at 284.366 kb on + strand, within Psyr_0266 at 284.366 kb on + strand, within Psyr_0266 at 284.366 kb on + strand, within Psyr_0266 at 284.366 kb on + strand, within Psyr_0266 at 284.646 kb on + strand, within Psyr_0266 at 284.646 kb on + strand, within Psyr_0266 at 284.647 kb on - strand, within Psyr_0266 at 284.647 kb on - strand, within Psyr_0266 at 284.749 kb on - strand, within Psyr_0266 at 284.959 kb on + strand at 284.959 kb on + strand at 284.960 kb on - strand at 284.960 kb on - strand at 284.960 kb on - strand at 285.185 kb on + strand, within Psyr_0267 at 285.185 kb on + strand, within Psyr_0267 at 285.186 kb on - strand, within Psyr_0267 at 285.306 kb on + strand, within Psyr_0267 at 285.306 kb on + strand, within Psyr_0267 at 285.307 kb on - strand, within Psyr_0267 at 285.307 kb on - strand, within Psyr_0267 at 285.467 kb on + strand, within Psyr_0267 at 285.468 kb on - strand, within Psyr_0267 at 285.468 kb on - strand, within Psyr_0267 at 285.468 kb on - strand, within Psyr_0267 at 285.468 kb on - strand, within Psyr_0267 at 285.468 kb on - strand, within Psyr_0267 at 285.468 kb on - strand, within Psyr_0267 at 285.519 kb on + strand, within Psyr_0267 at 285.706 kb on - strand, within Psyr_0267 at 285.714 kb on + strand, within Psyr_0267 at 285.876 kb on + strand at 285.876 kb on + strand at 285.877 kb on - strand at 285.877 kb on - strand at 285.877 kb on - strand at 285.975 kb on + strand, within Psyr_0268 at 286.178 kb on + strand, within Psyr_0268 at 286.425 kb on + strand, within Psyr_0268 at 286.426 kb on - strand, within Psyr_0268 at 286.426 kb on - strand, within Psyr_0268 at 286.426 kb on - strand, within Psyr_0268 at 286.468 kb on + strand at 286.513 kb on + strand at 286.592 kb on + strand at 286.598 kb on - strand at 286.611 kb on + strand at 286.644 kb on + strand at 286.644 kb on + strand at 286.701 kb on + strand at 286.701 kb on + strand at 286.738 kb on + strand at 286.738 kb on + strand at 286.738 kb on + strand at 286.738 kb on + strand at 286.738 kb on + strand at 286.740 kb on + strand at 286.740 kb on + strand at 286.740 kb on + strand at 286.740 kb on + strand at 286.740 kb on + strand at 286.740 kb on + strand at 286.740 kb on + strand at 286.740 kb on + strand at 286.741 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 284,087 - Psyr_0266 0.56 +0.7 284,362 + Psyr_0266 0.70 +0.8 284,362 + Psyr_0266 0.70 -0.9 284,363 - Psyr_0266 0.70 -0.4 284,363 - Psyr_0266 0.70 -0.7 284,363 - Psyr_0266 0.70 -1.2 284,363 - Psyr_0266 0.70 -1.1 284,363 - Psyr_0266 0.70 +0.4 284,366 + Psyr_0266 0.70 -2.6 284,366 + Psyr_0266 0.70 +1.9 284,366 + Psyr_0266 0.70 -1.0 284,366 + Psyr_0266 0.70 +0.2 284,366 + Psyr_0266 0.70 +0.8 284,646 + Psyr_0266 0.83 +3.6 284,646 + Psyr_0266 0.83 +0.8 284,647 - Psyr_0266 0.83 +0.6 284,647 - Psyr_0266 0.83 -1.4 284,749 - Psyr_0266 0.88 +0.1 284,959 + +1.5 284,959 + -0.3 284,960 - +0.3 284,960 - +0.6 284,960 - -3.0 285,185 + Psyr_0267 0.22 -1.5 285,185 + Psyr_0267 0.22 +0.5 285,186 - Psyr_0267 0.22 -0.2 285,306 + Psyr_0267 0.36 +0.4 285,306 + Psyr_0267 0.36 -0.6 285,307 - Psyr_0267 0.36 +0.1 285,307 - Psyr_0267 0.36 +0.0 285,467 + Psyr_0267 0.54 -1.1 285,468 - Psyr_0267 0.55 +0.3 285,468 - Psyr_0267 0.55 +0.2 285,468 - Psyr_0267 0.55 +4.8 285,468 - Psyr_0267 0.55 -0.8 285,468 - Psyr_0267 0.55 +0.8 285,468 - Psyr_0267 0.55 -1.0 285,519 + Psyr_0267 0.60 +0.4 285,706 - Psyr_0267 0.82 -0.6 285,714 + Psyr_0267 0.83 +2.0 285,876 + +0.9 285,876 + -0.4 285,877 - +0.3 285,877 - -0.3 285,877 - -3.4 285,975 + Psyr_0268 0.16 -0.3 286,178 + Psyr_0268 0.47 +1.2 286,425 + Psyr_0268 0.85 -1.1 286,426 - Psyr_0268 0.85 +1.3 286,426 - Psyr_0268 0.85 -0.6 286,426 - Psyr_0268 0.85 +1.7 286,468 + -0.6 286,513 + +2.1 286,592 + -0.0 286,598 - +1.0 286,611 + -0.1 286,644 + +0.9 286,644 + -0.7 286,701 + +1.6 286,701 + -1.9 286,738 + -1.1 286,738 + -0.5 286,738 + +1.3 286,738 + -0.6 286,738 + +0.3 286,740 + +0.4 286,740 + -0.3 286,740 + -0.2 286,740 + +0.4 286,740 + +0.1 286,740 + -0.1 286,740 + -0.1 286,740 + -2.1 286,741 + -0.4
Or see this region's nucleotide sequence