Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0192

Experiment: epiphytic; Green bean

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0190 and Psyr_0191 are separated by 417 nucleotidesPsyr_0191 and Psyr_0192 are separated by 227 nucleotidesPsyr_0192 and Psyr_0193 are separated by 15 nucleotides Psyr_0190: Psyr_0190 - nitrogen regulatory protein P-II, at 202,013 to 202,351 _0190 Psyr_0191: Psyr_0191 - Protein of unknown function DUF526, at 202,769 to 203,044 _0191 Psyr_0192: Psyr_0192 - conserved hypothetical protein, at 203,272 to 203,901 _0192 Psyr_0193: Psyr_0193 - transcriptional regulator, AraC family, at 203,917 to 204,834 _0193 Position (kb) 203 204Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 202.411 kb on - strandat 202.432 kb on - strandat 202.432 kb on - strandat 202.551 kb on + strandat 202.551 kb on + strandat 202.551 kb on + strandat 202.552 kb on - strandat 202.560 kb on - strandat 202.587 kb on - strandat 202.598 kb on - strandat 202.637 kb on + strandat 202.638 kb on - strandat 202.638 kb on - strandat 202.638 kb on - strandat 202.648 kb on + strandat 202.648 kb on + strandat 202.691 kb on + strandat 202.722 kb on + strandat 202.722 kb on + strandat 202.722 kb on + strandat 202.722 kb on + strandat 202.722 kb on + strandat 202.723 kb on - strandat 202.723 kb on - strandat 202.723 kb on - strandat 202.723 kb on - strandat 202.723 kb on - strandat 202.736 kb on + strandat 202.736 kb on + strandat 202.736 kb on + strandat 202.737 kb on - strandat 202.765 kb on - strandat 202.765 kb on - strandat 203.043 kb on - strandat 203.145 kb on + strandat 203.191 kb on + strandat 203.191 kb on + strandat 203.192 kb on - strandat 203.192 kb on - strandat 203.209 kb on + strandat 203.210 kb on - strandat 203.271 kb on + strandat 203.271 kb on + strandat 203.271 kb on + strandat 203.271 kb on + strandat 203.272 kb on - strandat 203.272 kb on - strandat 203.272 kb on - strandat 203.272 kb on - strandat 203.272 kb on - strandat 203.272 kb on - strandat 203.305 kb on - strandat 203.389 kb on + strand, within Psyr_0192at 203.389 kb on + strand, within Psyr_0192at 203.389 kb on + strand, within Psyr_0192at 203.389 kb on + strand, within Psyr_0192at 203.390 kb on - strand, within Psyr_0192at 203.390 kb on - strand, within Psyr_0192at 203.390 kb on - strand, within Psyr_0192at 203.390 kb on - strand, within Psyr_0192at 203.390 kb on - strand, within Psyr_0192at 203.437 kb on + strand, within Psyr_0192at 203.437 kb on + strand, within Psyr_0192at 203.437 kb on + strand, within Psyr_0192at 203.438 kb on - strand, within Psyr_0192at 203.438 kb on - strand, within Psyr_0192at 203.440 kb on + strand, within Psyr_0192at 203.440 kb on + strand, within Psyr_0192at 203.440 kb on + strand, within Psyr_0192at 203.441 kb on - strand, within Psyr_0192at 203.479 kb on + strand, within Psyr_0192at 203.479 kb on + strand, within Psyr_0192at 203.480 kb on - strand, within Psyr_0192at 203.480 kb on - strand, within Psyr_0192at 203.480 kb on - strand, within Psyr_0192at 203.555 kb on + strand, within Psyr_0192at 203.556 kb on - strand, within Psyr_0192at 203.556 kb on - strand, within Psyr_0192at 203.556 kb on - strand, within Psyr_0192at 203.556 kb on - strand, within Psyr_0192at 203.758 kb on + strand, within Psyr_0192at 203.758 kb on + strand, within Psyr_0192at 203.758 kb on + strand, within Psyr_0192at 203.758 kb on + strand, within Psyr_0192at 203.758 kb on + strand, within Psyr_0192at 203.758 kb on + strand, within Psyr_0192at 203.758 kb on + strand, within Psyr_0192at 203.758 kb on + strand, within Psyr_0192at 203.758 kb on + strand, within Psyr_0192at 203.758 kb on + strand, within Psyr_0192at 203.758 kb on + strand, within Psyr_0192at 203.759 kb on - strand, within Psyr_0192at 203.759 kb on - strand, within Psyr_0192at 203.759 kb on - strand, within Psyr_0192at 203.759 kb on - strand, within Psyr_0192at 203.759 kb on - strand, within Psyr_0192at 203.759 kb on - strand, within Psyr_0192at 203.759 kb on - strand, within Psyr_0192at 203.759 kb on - strand, within Psyr_0192at 203.759 kb on - strand, within Psyr_0192at 203.759 kb on - strand, within Psyr_0192at 203.872 kb on + strandat 203.873 kb on - strandat 203.978 kb on + strandat 203.978 kb on + strandat 203.979 kb on - strandat 203.979 kb on - strandat 204.096 kb on - strand, within Psyr_0193at 204.200 kb on + strand, within Psyr_0193at 204.200 kb on + strand, within Psyr_0193at 204.200 kb on + strand, within Psyr_0193at 204.201 kb on - strand, within Psyr_0193at 204.201 kb on - strand, within Psyr_0193at 204.201 kb on - strand, within Psyr_0193at 204.308 kb on + strand, within Psyr_0193at 204.308 kb on + strand, within Psyr_0193at 204.308 kb on + strand, within Psyr_0193at 204.340 kb on - strand, within Psyr_0193at 204.340 kb on - strand, within Psyr_0193at 204.510 kb on + strand, within Psyr_0193at 204.511 kb on - strand, within Psyr_0193at 204.511 kb on - strand, within Psyr_0193at 204.518 kb on + strand, within Psyr_0193at 204.519 kb on - strand, within Psyr_0193at 204.519 kb on - strand, within Psyr_0193at 204.584 kb on + strand, within Psyr_0193at 204.584 kb on + strand, within Psyr_0193at 204.585 kb on - strand, within Psyr_0193at 204.585 kb on - strand, within Psyr_0193at 204.585 kb on - strand, within Psyr_0193at 204.599 kb on + strand, within Psyr_0193at 204.599 kb on + strand, within Psyr_0193at 204.599 kb on + strand, within Psyr_0193at 204.600 kb on - strand, within Psyr_0193at 204.600 kb on - strand, within Psyr_0193at 204.600 kb on - strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.726 kb on + strand, within Psyr_0193at 204.726 kb on + strand, within Psyr_0193at 204.727 kb on - strand, within Psyr_0193at 204.737 kb on + strand, within Psyr_0193at 204.828 kb on + strandat 204.839 kb on - strandat 204.865 kb on + strandat 204.865 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Green bean
remove
202,411 - +1.1
202,432 - +0.4
202,432 - +0.7
202,551 + -0.3
202,551 + +0.4
202,551 + +2.7
202,552 - -0.9
202,560 - -1.3
202,587 - +0.1
202,598 - +0.0
202,637 + +0.7
202,638 - +1.0
202,638 - +0.4
202,638 - -2.6
202,648 + +0.8
202,648 + -2.3
202,691 + -1.1
202,722 + -1.1
202,722 + +1.4
202,722 + -0.6
202,722 + +3.2
202,722 + +0.3
202,723 - +0.9
202,723 - +1.1
202,723 - -1.9
202,723 - -0.1
202,723 - +1.4
202,736 + +1.6
202,736 + +0.5
202,736 + +0.3
202,737 - +0.4
202,765 - -0.3
202,765 - -1.1
203,043 - -0.9
203,145 + -0.0
203,191 + +0.7
203,191 + +0.7
203,192 - +0.8
203,192 - +0.6
203,209 + +1.2
203,210 - -0.4
203,271 + -1.4
203,271 + +1.1
203,271 + -0.3
203,271 + +1.1
203,272 - -0.1
203,272 - -2.2
203,272 - -0.9
203,272 - -0.2
203,272 - +0.7
203,272 - +1.1
203,305 - +0.5
203,389 + Psyr_0192 0.19 +0.7
203,389 + Psyr_0192 0.19 +0.7
203,389 + Psyr_0192 0.19 +1.1
203,389 + Psyr_0192 0.19 +0.4
203,390 - Psyr_0192 0.19 +0.4
203,390 - Psyr_0192 0.19 -0.9
203,390 - Psyr_0192 0.19 -1.7
203,390 - Psyr_0192 0.19 -0.6
203,390 - Psyr_0192 0.19 +0.8
203,437 + Psyr_0192 0.26 +0.3
203,437 + Psyr_0192 0.26 -0.7
203,437 + Psyr_0192 0.26 +0.1
203,438 - Psyr_0192 0.26 +0.3
203,438 - Psyr_0192 0.26 -0.8
203,440 + Psyr_0192 0.27 +4.1
203,440 + Psyr_0192 0.27 -0.9
203,440 + Psyr_0192 0.27 +2.3
203,441 - Psyr_0192 0.27 +0.5
203,479 + Psyr_0192 0.33 +0.1
203,479 + Psyr_0192 0.33 -0.2
203,480 - Psyr_0192 0.33 -0.3
203,480 - Psyr_0192 0.33 +0.7
203,480 - Psyr_0192 0.33 +0.5
203,555 + Psyr_0192 0.45 -3.2
203,556 - Psyr_0192 0.45 +0.0
203,556 - Psyr_0192 0.45 +0.7
203,556 - Psyr_0192 0.45 +0.0
203,556 - Psyr_0192 0.45 -1.4
203,758 + Psyr_0192 0.77 -0.9
203,758 + Psyr_0192 0.77 +0.2
203,758 + Psyr_0192 0.77 +1.6
203,758 + Psyr_0192 0.77 -0.4
203,758 + Psyr_0192 0.77 +2.1
203,758 + Psyr_0192 0.77 +0.0
203,758 + Psyr_0192 0.77 +1.5
203,758 + Psyr_0192 0.77 +0.1
203,758 + Psyr_0192 0.77 +0.1
203,758 + Psyr_0192 0.77 -0.4
203,758 + Psyr_0192 0.77 +0.4
203,759 - Psyr_0192 0.77 -0.6
203,759 - Psyr_0192 0.77 -1.4
203,759 - Psyr_0192 0.77 -0.8
203,759 - Psyr_0192 0.77 -1.7
203,759 - Psyr_0192 0.77 +1.5
203,759 - Psyr_0192 0.77 +0.6
203,759 - Psyr_0192 0.77 -0.8
203,759 - Psyr_0192 0.77 +2.5
203,759 - Psyr_0192 0.77 -0.9
203,759 - Psyr_0192 0.77 -0.1
203,872 + -0.6
203,873 - +0.7
203,978 + -0.1
203,978 + +0.8
203,979 - +1.5
203,979 - -0.8
204,096 - Psyr_0193 0.19 +1.2
204,200 + Psyr_0193 0.31 +0.4
204,200 + Psyr_0193 0.31 -0.8
204,200 + Psyr_0193 0.31 +0.3
204,201 - Psyr_0193 0.31 -1.9
204,201 - Psyr_0193 0.31 -0.0
204,201 - Psyr_0193 0.31 -0.5
204,308 + Psyr_0193 0.43 +0.3
204,308 + Psyr_0193 0.43 +0.6
204,308 + Psyr_0193 0.43 -2.1
204,340 - Psyr_0193 0.46 -0.0
204,340 - Psyr_0193 0.46 -0.6
204,510 + Psyr_0193 0.65 -2.0
204,511 - Psyr_0193 0.65 -1.1
204,511 - Psyr_0193 0.65 -0.1
204,518 + Psyr_0193 0.65 -0.3
204,519 - Psyr_0193 0.66 +1.3
204,519 - Psyr_0193 0.66 -0.5
204,584 + Psyr_0193 0.73 -2.3
204,584 + Psyr_0193 0.73 -0.5
204,585 - Psyr_0193 0.73 -0.5
204,585 - Psyr_0193 0.73 +0.9
204,585 - Psyr_0193 0.73 -1.1
204,599 + Psyr_0193 0.74 +1.2
204,599 + Psyr_0193 0.74 +0.8
204,599 + Psyr_0193 0.74 +1.7
204,600 - Psyr_0193 0.74 +0.7
204,600 - Psyr_0193 0.74 -0.9
204,600 - Psyr_0193 0.74 +0.8
204,605 + Psyr_0193 0.75 -0.4
204,605 + Psyr_0193 0.75 -1.1
204,605 + Psyr_0193 0.75 -0.0
204,605 + Psyr_0193 0.75 +0.3
204,605 + Psyr_0193 0.75 +0.7
204,605 + Psyr_0193 0.75 -1.3
204,605 + Psyr_0193 0.75 +0.6
204,605 + Psyr_0193 0.75 +0.6
204,605 + Psyr_0193 0.75 -1.4
204,605 + Psyr_0193 0.75 +0.2
204,605 + Psyr_0193 0.75 -0.6
204,605 + Psyr_0193 0.75 +0.6
204,606 - Psyr_0193 0.75 +0.5
204,606 - Psyr_0193 0.75 +1.2
204,606 - Psyr_0193 0.75 +1.4
204,606 - Psyr_0193 0.75 +0.6
204,606 - Psyr_0193 0.75 -1.6
204,606 - Psyr_0193 0.75 -0.2
204,606 - Psyr_0193 0.75 -1.7
204,606 - Psyr_0193 0.75 -2.0
204,606 - Psyr_0193 0.75 +0.1
204,606 - Psyr_0193 0.75 -1.9
204,606 - Psyr_0193 0.75 +1.7
204,606 - Psyr_0193 0.75 -1.2
204,606 - Psyr_0193 0.75 +0.3
204,606 - Psyr_0193 0.75 -1.2
204,606 - Psyr_0193 0.75 +0.3
204,606 - Psyr_0193 0.75 +1.0
204,726 + Psyr_0193 0.88 +0.1
204,726 + Psyr_0193 0.88 -0.7
204,727 - Psyr_0193 0.88 -1.2
204,737 + Psyr_0193 0.89 -2.2
204,828 + +0.7
204,839 - +2.1
204,865 + -0.3
204,865 + -0.2

Or see this region's nucleotide sequence